Wall clock time and date at job start Mon Mar 30 2020 05:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37593 * 120.54185 * 2 1 4 4 N 1.31979 * 121.99618 * 179.67262 * 3 2 1 5 5 C 1.31597 * 123.18018 * 0.65205 * 4 3 2 6 6 C 1.50701 * 119.66942 * 179.67834 * 5 4 3 7 7 F 1.39898 * 109.47468 * 29.97652 * 6 5 4 8 8 F 1.39899 * 109.47168 * 149.97852 * 6 5 4 9 9 C 1.39548 * 120.65991 * 359.65239 * 5 4 3 10 10 C 1.43198 * 121.01489 * 179.97438 * 9 5 4 11 11 N 4.87475 * 138.12612 * 180.29343 * 2 1 3 12 12 C 1.41158 * 120.53764 * 180.28134 * 2 1 3 13 13 C 1.40920 * 121.36521 * 359.97438 * 12 2 1 14 14 H 1.08007 * 120.00261 * 316.34128 * 13 12 2 15 15 C 1.40325 * 119.99975 * 136.35181 * 13 12 2 16 16 N 1.30592 * 120.00103 * 153.80225 * 15 13 12 17 17 Si 1.86799 * 119.99693 * 333.80054 * 15 13 12 18 18 H 1.48500 * 109.47157 * 94.66844 * 17 15 13 19 19 H 1.48504 * 109.47017 * 214.66894 * 17 15 13 20 20 H 1.48498 * 109.47059 * 334.66478 * 17 15 13 21 21 H 1.08995 * 109.47392 * 269.72337 * 1 2 3 22 22 H 1.09005 * 109.47133 * 149.71972 * 1 2 3 23 23 H 1.09004 * 109.47123 * 29.72523 * 1 2 3 24 24 H 1.08002 * 118.99828 * 0.02562 * 3 2 1 25 25 H 1.09005 * 109.46933 * 269.97515 * 6 5 4 26 26 H 0.97000 * 119.99771 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2062 1.1850 0.0000 4 7 3.5256 1.2185 0.0064 5 6 4.2735 0.1358 0.0007 6 6 5.7749 0.2663 0.0014 7 9 6.1406 1.4414 0.6666 8 9 6.3384 -0.8345 0.6555 9 6 3.6903 -1.1320 -0.0055 10 6 4.4969 -2.3151 -0.0123 11 7 5.1368 -3.2538 -0.0167 12 6 2.2243 -1.2158 -0.0060 13 6 1.5606 -2.4589 -0.0115 14 1 0.7095 -2.6196 0.6338 15 6 2.0055 -3.4880 -0.8553 16 7 1.7791 -4.7349 -0.5399 17 14 2.9217 -3.0744 -2.4298 18 1 4.3845 -3.1204 -2.1780 19 1 2.5691 -4.0617 -3.4816 20 1 2.5397 -1.7123 -2.8815 21 1 -0.3634 -0.0050 1.0276 22 1 -0.3634 -0.8875 -0.5182 23 1 -0.3633 0.8925 -0.5096 24 1 1.6587 2.1160 0.0004 25 1 6.1369 0.3027 -1.0261 26 1 2.0863 -5.4462 -1.1234 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238499619.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:02 Heat of formation + Delta-G solvation = -61.909127 kcal Electronic energy + Delta-G solvation = -16652.778081 eV Core-core repulsion = 13559.430016 eV Total energy + Delta-G solvation = -3093.348065 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -50.02813 -48.03943 -40.68216 -37.47376 -36.12650 -34.44780 -32.99726 -29.83964 -28.07274 -25.99003 -24.70942 -22.20306 -20.01000 -19.18716 -18.53665 -18.23949 -17.92627 -17.25833 -16.67915 -15.36667 -15.24635 -15.11130 -14.84202 -14.57512 -14.43062 -14.31599 -13.95716 -13.64508 -13.56844 -13.35429 -13.23302 -12.87389 -12.59466 -12.41120 -12.16464 -11.88132 -11.21488 -10.24911 -10.01508 -9.69928 -9.20255 -6.85973 -0.15199 0.42730 1.16695 1.19639 1.31284 1.90056 1.93942 2.21280 2.40292 2.53376 3.10086 3.15732 3.27987 3.52062 3.92868 4.25717 4.39317 4.47159 4.64301 4.78596 4.96626 5.09490 5.20771 5.37485 5.64223 5.82685 6.01327 6.28803 6.45486 6.76714 7.21784 7.82071 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.022280 B = 0.013547 C = 0.009591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.455097 B = 2066.350525 C = 2918.652426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.200 4.200 3 C 0.126 3.874 4 N -0.539 5.539 5 C 0.116 3.884 6 C 0.319 3.681 7 F -0.191 7.191 8 F -0.207 7.207 9 C -0.202 4.202 10 C 0.289 3.711 11 N -0.484 5.484 12 C 0.125 3.875 13 C -0.449 4.449 14 H 0.097 0.903 15 C 0.072 3.928 16 N -0.792 5.792 17 Si 0.902 3.098 18 H -0.255 1.255 19 H -0.261 1.261 20 H -0.236 1.236 21 H 0.067 0.933 22 H 0.058 0.942 23 H 0.087 0.913 24 H 0.184 0.816 25 H 0.160 0.840 26 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.497 9.213 -3.270 9.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.203 4.203 3 C -0.023 4.023 4 N -0.251 5.251 5 C -0.027 4.027 6 C 0.265 3.735 7 F -0.172 7.172 8 F -0.188 7.188 9 C -0.213 4.213 10 C -0.023 4.023 11 N -0.163 5.163 12 C 0.116 3.884 13 C -0.478 4.478 14 H 0.115 0.885 15 C -0.151 4.151 16 N -0.414 5.414 17 Si 0.723 3.277 18 H -0.180 1.180 19 H -0.185 1.185 20 H -0.158 1.158 21 H 0.085 0.915 22 H 0.077 0.923 23 H 0.106 0.894 24 H 0.201 0.799 25 H 0.176 0.824 26 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.845 8.324 -3.246 8.974 hybrid contribution -0.239 -1.092 -0.248 1.145 sum 0.606 7.231 -3.493 8.054 Atomic orbital electron populations 1.20478 0.88586 1.03058 1.02133 1.21368 0.98523 0.92160 1.08285 1.22645 0.88459 0.98125 0.93097 1.66919 1.08255 1.29252 1.20683 1.21333 0.95186 0.88502 0.97719 1.20472 0.87779 0.70800 0.94457 1.92977 1.92414 1.48089 1.83691 1.92997 1.86073 1.55089 1.84639 1.17945 0.92766 0.87145 1.23426 1.25288 0.91842 0.92743 0.92385 1.81006 1.11441 1.11065 1.12774 1.18818 0.87870 0.94151 0.87603 1.19434 1.13909 0.93775 1.20649 0.88501 1.26661 0.93139 0.93791 1.01533 1.69631 1.34222 1.01465 1.36125 0.86464 0.80750 0.81553 0.78976 1.17985 1.18526 1.15846 0.91456 0.92324 0.89432 0.79921 0.82357 0.89066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.47 9.63 71.24 0.69 -1.79 15 2 C -0.20 -7.27 5.96 -19.30 -0.11 -7.39 15 3 C 0.13 4.16 10.78 84.52 0.91 5.07 15 4 N -0.54 -20.05 9.86 -183.43 -1.81 -21.86 15 5 C 0.12 4.61 6.63 42.91 0.28 4.89 15 6 C 0.32 11.00 5.53 71.24 0.39 11.39 15 7 F -0.19 -6.53 17.06 44.97 0.77 -5.76 15 8 F -0.21 -8.14 14.57 44.97 0.66 -7.49 15 9 C -0.20 -9.04 4.89 -19.46 -0.10 -9.13 15 10 C 0.29 13.86 7.85 88.33 0.69 14.55 15 11 N -0.48 -24.30 17.24 19.00 0.33 -23.98 15 12 C 0.13 5.53 4.75 -19.65 -0.09 5.43 15 13 C -0.45 -21.56 7.99 23.43 0.19 -21.38 15 14 H 0.10 4.80 7.95 -2.91 -0.02 4.78 15 15 C 0.07 3.53 4.55 85.38 0.39 3.92 15 16 N -0.79 -40.13 13.92 21.89 0.30 -39.82 15 17 Si 0.90 39.00 24.88 68.60 1.71 40.71 15 18 H -0.26 -11.61 5.30 99.48 0.53 -11.08 15 19 H -0.26 -10.58 7.11 99.48 0.71 -9.88 15 20 H -0.24 -9.74 7.11 99.48 0.71 -9.03 15 21 H 0.07 1.81 8.14 -2.39 -0.02 1.79 15 22 H 0.06 1.87 7.22 -2.38 -0.02 1.85 15 23 H 0.09 1.91 8.09 -2.38 -0.02 1.89 15 24 H 0.18 4.42 8.06 -2.91 -0.02 4.39 15 25 H 0.16 4.20 8.14 -2.38 -0.02 4.18 15 26 H 0.30 14.00 8.29 -92.71 -0.77 13.23 15 Total: -1.00 -56.73 241.50 6.24 -50.49 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: 1.05 Total: 2.13 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 3.24 Total: 5.58 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -1.18 Total: -85.66 kcal Atomic # 9 Polarization: -14.67 SS G_CDS: 1.42 Total: -13.25 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 1.71 Total: 40.71 kcal Total: -56.73 6.24 -50.49 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238499619.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.421 kcal (2) G-P(sol) polarization free energy of solvation -56.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds