Wall clock time and date at job start Mon Mar 30 2020 05:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39014 * 119.23384 * 2 1 4 4 C 1.36826 * 119.81279 * 180.26434 * 3 2 1 5 5 C 1.50700 * 120.80836 * 179.73166 * 4 3 2 6 6 F 1.39899 * 109.47369 * 119.71779 * 5 4 3 7 7 F 1.39909 * 109.47143 * 239.72045 * 5 4 3 8 8 C 1.41217 * 118.38741 * 359.45706 * 4 3 2 9 9 C 1.40804 * 120.72942 * 180.25719 * 8 4 3 10 10 H 1.08000 * 119.99940 * 316.57596 * 9 8 4 11 11 C 1.40258 * 120.00082 * 136.58561 * 9 8 4 12 12 N 1.30650 * 120.00172 * 338.86491 * 11 9 8 13 13 Si 1.86798 * 119.99931 * 158.86993 * 11 9 8 14 14 H 1.48505 * 109.47256 * 89.99878 * 13 11 9 15 15 H 1.48498 * 109.47134 * 209.99634 * 13 11 9 16 16 H 1.48499 * 109.47285 * 329.99535 * 13 11 9 17 17 C 1.41951 * 118.54105 * 0.27355 * 8 4 3 18 18 C 1.43205 * 120.00051 * 179.97438 * 17 8 4 19 19 N 4.69973 * 132.16367 * 179.71869 * 2 1 3 20 20 N 1.31585 * 119.23568 * 179.71049 * 2 1 3 21 21 H 1.09007 * 109.46664 * 270.28789 * 1 2 3 22 22 H 1.08990 * 109.47457 * 30.29008 * 1 2 3 23 23 H 1.09005 * 109.47030 * 150.29665 * 1 2 3 24 24 H 1.08005 * 120.09521 * 0.02562 * 3 2 1 25 25 H 1.09002 * 109.46994 * 359.71623 * 5 4 3 26 26 H 0.96998 * 119.99718 * 185.32987 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1859 1.2131 0.0000 4 6 3.5541 1.2269 -0.0055 5 6 4.3128 2.5290 -0.0117 6 9 5.1171 2.6056 1.1305 7 9 5.1177 2.5943 -1.1542 8 6 4.2381 -0.0086 0.0008 9 6 5.6454 -0.0518 0.0010 10 1 6.2060 0.6073 -0.6453 11 6 6.3193 -0.9511 0.8403 12 7 5.7165 -1.4414 1.8906 13 14 8.0787 -1.4476 0.4565 14 1 9.0151 -0.5084 1.1246 15 1 8.3232 -2.8261 0.9517 16 1 8.2966 -1.4031 -1.0117 17 6 3.4755 -1.2059 0.0064 18 6 4.1370 -2.4760 0.0123 19 7 4.6617 -3.4835 0.0171 20 7 2.1497 -1.1482 0.0058 21 1 -0.3633 0.0052 1.0277 22 1 -0.3634 0.8873 -0.5183 23 1 -0.3633 -0.8927 -0.5092 24 1 1.6350 2.1421 0.0004 25 1 3.6078 3.3603 -0.0160 26 1 6.2058 -2.0017 2.5131 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238501860.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:37 Heat of formation + Delta-G solvation = -56.755757 kcal Electronic energy + Delta-G solvation = -16592.309362 eV Core-core repulsion = 13499.184764 eV Total energy + Delta-G solvation = -3093.124599 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.10797 -46.09160 -39.07874 -35.47621 -34.13574 -32.32984 -31.54627 -28.31717 -25.64955 -25.02223 -23.05404 -20.33161 -18.09504 -17.60111 -16.89019 -16.35376 -15.47544 -15.33268 -14.67068 -14.13515 -13.71925 -13.02332 -12.96813 -12.56513 -12.48994 -12.42214 -12.05440 -11.86246 -11.79632 -11.56453 -11.28130 -11.20370 -10.95986 -10.89186 -10.45988 -10.38506 -9.41131 -8.86932 -8.55063 -7.67288 -7.17368 -4.88006 1.83768 2.31938 2.95290 3.02937 3.05435 3.74260 3.90251 3.98228 4.46250 4.53639 4.91251 4.96521 5.21012 5.44003 5.72890 5.87823 5.90561 5.96069 6.19530 6.25828 6.51334 6.61900 6.80377 7.00143 7.12968 7.45177 7.94294 8.13389 8.35815 8.82247 9.08508 9.78438 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.020754 B = 0.013159 C = 0.008889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.787221 B = 2127.281805 C = 3149.057048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.006 4.006 3 C -0.076 4.076 4 C -0.227 4.227 5 C 0.336 3.664 6 F -0.198 7.198 7 F -0.208 7.208 8 C 0.136 3.864 9 C -0.447 4.447 10 H 0.104 0.896 11 C 0.083 3.917 12 N -0.758 5.758 13 Si 0.908 3.092 14 H -0.263 1.263 15 H -0.269 1.269 16 H -0.253 1.253 17 C 0.092 3.908 18 C 0.335 3.665 19 N -0.477 5.477 20 N -0.417 5.417 21 H 0.056 0.944 22 H 0.058 0.942 23 H 0.061 0.939 24 H 0.116 0.884 25 H 0.098 0.902 26 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.620 7.427 -1.693 8.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.147 4.147 3 C -0.097 4.097 4 C -0.236 4.236 5 C 0.283 3.717 6 F -0.179 7.179 7 F -0.189 7.189 8 C 0.128 3.872 9 C -0.474 4.474 10 H 0.121 0.879 11 C -0.142 4.142 12 N -0.380 5.380 13 Si 0.730 3.270 14 H -0.188 1.188 15 H -0.194 1.194 16 H -0.177 1.177 17 C -0.051 4.051 18 C 0.021 3.979 19 N -0.156 5.156 20 N -0.127 5.127 21 H 0.075 0.925 22 H 0.077 0.923 23 H 0.080 0.920 24 H 0.134 0.866 25 H 0.116 0.884 26 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.264 4.922 -1.492 6.092 hybrid contribution 1.184 0.972 0.171 1.541 sum -2.081 5.895 -1.321 6.389 Atomic orbital electron populations 1.20321 0.90217 1.01600 1.01203 1.20219 0.95381 0.87386 1.11744 1.21111 0.93274 0.98379 0.96943 1.20350 0.93787 0.94336 1.15120 1.19917 0.84070 0.96380 0.71353 1.92989 1.76415 1.97321 1.51182 1.92942 1.76701 1.97448 1.51796 1.17768 0.94034 0.88966 0.86423 1.19688 0.90902 1.17026 1.19826 0.87862 1.25995 1.01818 0.92611 0.93781 1.69583 1.39222 1.22052 1.07119 0.86248 0.80673 0.79028 0.81020 1.18773 1.19359 1.17688 1.16439 0.87587 0.86935 1.14131 1.24574 0.91175 0.90894 0.91239 1.80916 1.10400 1.12309 1.12007 1.66722 1.08952 1.30054 1.07010 0.92503 0.92311 0.91965 0.86633 0.88419 0.89473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.13 10.15 36.01 0.37 -0.77 15 2 C -0.01 -0.13 6.79 -82.41 -0.56 -0.69 15 3 C -0.08 -1.40 9.30 -39.81 -0.37 -1.77 15 4 C -0.23 -4.77 5.41 -104.00 -0.56 -5.33 15 5 C 0.34 6.16 5.06 36.01 0.18 6.35 15 6 F -0.20 -4.09 16.67 2.25 0.04 -4.05 15 7 F -0.21 -4.02 15.92 2.25 0.04 -3.99 15 8 C 0.14 3.31 5.29 -106.38 -0.56 2.75 15 9 C -0.45 -11.11 7.29 -37.85 -0.28 -11.38 15 10 H 0.10 2.51 6.74 -52.49 -0.35 2.16 15 11 C 0.08 2.03 4.03 -17.30 -0.07 1.96 15 12 N -0.76 -19.35 11.30 55.56 0.63 -18.72 15 13 Si 0.91 19.24 29.61 -169.99 -5.03 14.21 15 14 H -0.26 -5.31 7.11 56.52 0.40 -4.91 15 15 H -0.27 -5.78 7.11 56.52 0.40 -5.38 15 16 H -0.25 -5.33 7.11 56.52 0.40 -4.93 15 17 C 0.09 2.30 6.35 -84.14 -0.53 1.76 15 18 C 0.33 8.69 11.80 -22.47 -0.27 8.42 15 19 N -0.48 -12.41 18.49 41.84 0.77 -11.64 15 20 N -0.42 -9.70 10.17 -6.66 -0.07 -9.77 15 21 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 22 H 0.06 0.71 8.07 -51.93 -0.42 0.29 15 23 H 0.06 0.92 8.14 -51.93 -0.42 0.50 15 24 H 0.12 1.61 7.97 -52.48 -0.42 1.20 15 25 H 0.10 1.32 7.92 -51.93 -0.41 0.91 15 26 H 0.29 7.02 8.30 -40.82 -0.34 6.68 15 LS Contribution 250.24 15.07 3.77 3.77 Total: -1.00 -27.92 250.24 -4.09 -32.01 By element: Atomic # 1 Polarization: -1.54 SS G_CDS: -1.58 Total: -3.12 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -2.65 Total: 1.30 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: 1.33 Total: -40.13 kcal Atomic # 9 Polarization: -8.11 SS G_CDS: 0.07 Total: -8.04 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -27.92 -4.09 -32.01 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238501860.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.749 kcal (2) G-P(sol) polarization free energy of solvation -27.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds