Wall clock time and date at job start Mon Mar 30 2020 05:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38197 * 120.37758 * 2 1 4 4 N 1.32184 * 121.51149 * 179.72319 * 3 2 1 5 5 C 1.31319 * 122.38549 * 0.27903 * 4 3 2 6 6 C 1.50697 * 119.74323 * 179.97438 * 5 4 3 7 7 F 1.39901 * 109.46847 * 22.25088 * 6 5 4 8 8 F 1.39898 * 109.47083 * 142.24642 * 6 5 4 9 9 C 1.40857 * 120.51924 * 359.97438 * 5 4 3 10 10 C 1.40766 * 120.77205 * 180.02562 * 9 5 4 11 11 H 1.07994 * 120.00416 * 314.06388 * 10 9 5 12 12 C 1.40283 * 119.99994 * 134.05524 * 10 9 5 13 13 N 1.30642 * 120.00151 * 154.16655 * 12 10 9 14 14 Si 1.86801 * 120.00100 * 334.16859 * 12 10 9 15 15 H 1.48502 * 109.47195 * 95.36326 * 14 12 10 16 16 H 1.48497 * 109.47242 * 215.36092 * 14 12 10 17 17 H 1.48498 * 109.47207 * 335.36459 * 14 12 10 18 18 C 1.39669 * 120.37518 * 180.25669 * 2 1 3 19 19 C 1.43200 * 121.06594 * 359.97438 * 18 2 1 20 20 N 3.49953 * 81.42924 * 180.24965 * 2 1 3 21 21 H 1.09004 * 109.47233 * 89.99387 * 1 2 3 22 22 H 1.08996 * 109.47473 * 209.99726 * 1 2 3 23 23 H 1.08996 * 109.46639 * 330.00047 * 1 2 3 24 24 H 1.07993 * 119.24470 * 0.02562 * 3 2 1 25 25 H 1.08999 * 109.47579 * 262.25215 * 6 5 4 26 26 H 0.96998 * 119.99848 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1922 0.0000 4 7 3.5275 1.2184 0.0054 5 6 4.2526 0.1236 0.0057 6 6 5.7563 0.2229 0.0115 7 9 6.1393 1.4706 0.5151 8 9 6.2873 -0.7888 0.8188 9 6 3.6360 -1.1428 0.0007 10 6 4.4082 -2.3198 0.0015 11 1 5.2510 -2.4132 -0.6672 12 6 4.0830 -3.3714 0.8712 13 7 4.4181 -4.5972 0.5680 14 14 3.1710 -3.0190 2.4629 15 1 1.7148 -3.2225 2.2545 16 1 3.6525 -3.9399 3.5237 17 1 3.4203 -1.6146 2.8758 18 6 2.2133 -1.2050 -0.0054 19 6 1.5287 -2.4627 -0.0105 20 7 0.9855 -3.4604 -0.0151 21 1 -0.3634 0.0001 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3632 0.8900 0.5138 24 1 1.6598 2.1239 0.0004 25 1 6.1318 0.1108 -1.0056 26 1 4.1936 -5.3242 1.1696 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238501912.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:10 Heat of formation + Delta-G solvation = -63.558313 kcal Electronic energy + Delta-G solvation = -16721.293837 eV Core-core repulsion = 13627.874258 eV Total energy + Delta-G solvation = -3093.419580 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.62930 -47.64781 -40.92585 -37.62636 -35.98360 -34.53750 -33.36578 -29.60856 -28.11751 -25.88483 -24.71360 -22.29618 -19.91114 -19.47667 -18.29459 -18.11844 -17.24856 -17.18834 -16.54398 -15.46797 -15.19994 -15.12585 -14.76713 -14.49712 -14.35233 -14.03449 -13.82710 -13.75800 -13.71652 -13.44688 -13.21737 -13.17267 -12.67385 -12.44636 -12.20158 -11.69809 -11.32016 -10.33457 -10.23938 -9.64824 -9.16201 -6.74993 -0.06816 0.31478 1.10475 1.14454 1.27311 1.80977 1.90420 2.16535 2.41553 2.94119 3.17122 3.21090 3.42024 3.87856 4.08252 4.18653 4.26202 4.48266 4.59620 4.78080 4.83944 4.97074 5.16354 5.25477 5.42145 5.69893 6.03029 6.21990 6.45328 6.68548 7.24183 7.86784 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.019729 B = 0.015568 C = 0.009969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.899189 B = 1798.166856 C = 2807.894049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.028 4.028 3 C -0.014 4.014 4 N -0.427 5.427 5 C -0.048 4.048 6 C 0.342 3.658 7 F -0.205 7.205 8 F -0.200 7.200 9 C 0.085 3.915 10 C -0.447 4.447 11 H 0.097 0.903 12 C 0.077 3.923 13 N -0.796 5.796 14 Si 0.898 3.102 15 H -0.254 1.254 16 H -0.260 1.260 17 H -0.250 1.250 18 C -0.143 4.143 19 C 0.293 3.707 20 N -0.482 5.482 21 H 0.094 0.906 22 H 0.048 0.952 23 H 0.108 0.892 24 H 0.187 0.813 25 H 0.143 0.857 26 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.860 8.756 -0.069 9.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.033 4.033 3 C -0.168 4.168 4 N -0.134 5.134 5 C -0.193 4.193 6 C 0.288 3.712 7 F -0.187 7.187 8 F -0.181 7.181 9 C 0.077 3.923 10 C -0.476 4.476 11 H 0.115 0.885 12 C -0.145 4.145 13 N -0.418 5.418 14 Si 0.719 3.281 15 H -0.179 1.179 16 H -0.184 1.184 17 H -0.173 1.173 18 C -0.154 4.154 19 C -0.018 4.018 20 N -0.161 5.161 21 H 0.112 0.888 22 H 0.067 0.933 23 H 0.126 0.874 24 H 0.204 0.796 25 H 0.160 0.840 26 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.235 7.739 -0.013 8.388 hybrid contribution -0.154 -1.001 0.740 1.254 sum -3.390 6.738 0.727 7.578 Atomic orbital electron populations 1.20908 0.88329 1.03770 1.04048 1.21118 0.98144 0.91762 0.92250 1.22409 0.88261 0.97313 1.08854 1.66681 1.09102 1.31251 1.06362 1.21729 0.95592 0.89043 1.12979 1.19949 0.87741 0.70507 0.93026 1.92926 1.92154 1.43526 1.90046 1.93000 1.87109 1.60969 1.77010 1.18080 0.90564 0.93701 0.89919 1.19324 1.13158 0.96072 1.19047 0.88532 1.26409 0.93365 0.93564 1.01177 1.69630 1.35247 1.00751 1.36191 0.86501 0.80502 0.81092 0.79997 1.17872 1.18449 1.17273 1.16604 0.92323 0.86790 1.19709 1.25376 0.91675 0.92633 0.92139 1.81047 1.11623 1.10797 1.12643 0.88765 0.93269 0.87384 0.79623 0.84046 0.89271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.87 9.65 71.24 0.69 -2.19 15 2 C -0.03 -0.97 5.93 -19.53 -0.12 -1.08 15 3 C -0.01 -0.47 10.83 84.63 0.92 0.45 15 4 N -0.43 -16.43 9.82 -181.99 -1.79 -18.22 15 5 C -0.05 -1.97 6.65 43.28 0.29 -1.69 15 6 C 0.34 12.81 5.35 71.24 0.38 13.20 15 7 F -0.21 -7.65 16.98 44.97 0.76 -6.88 15 8 F -0.20 -8.42 15.01 44.97 0.68 -7.75 15 9 C 0.08 3.83 4.54 -20.98 -0.10 3.74 15 10 C -0.45 -22.08 6.82 23.39 0.16 -21.92 15 11 H 0.10 4.90 7.76 -2.91 -0.02 4.88 15 12 C 0.08 3.88 4.47 85.37 0.38 4.26 15 13 N -0.80 -41.17 13.92 21.88 0.30 -40.86 15 14 Si 0.90 40.97 24.99 68.60 1.71 42.69 15 15 H -0.25 -11.72 5.66 99.48 0.56 -11.15 15 16 H -0.26 -11.22 7.11 99.48 0.71 -10.51 15 17 H -0.25 -11.49 7.11 99.48 0.71 -10.78 15 18 C -0.14 -6.08 4.78 -20.65 -0.10 -6.18 15 19 C 0.29 13.31 9.17 88.33 0.81 14.12 15 20 N -0.48 -22.97 17.61 19.00 0.33 -22.64 15 21 H 0.09 2.07 8.14 -2.39 -0.02 2.05 15 22 H 0.05 1.40 7.18 -2.39 -0.02 1.38 15 23 H 0.11 1.97 8.09 -2.39 -0.02 1.95 15 24 H 0.19 4.43 8.06 -2.91 -0.02 4.40 15 25 H 0.14 4.29 8.14 -2.39 -0.02 4.27 15 26 H 0.30 14.24 8.29 -92.71 -0.77 13.47 15 Total: -1.00 -57.39 242.07 6.41 -50.98 By element: Atomic # 1 Polarization: -1.12 SS G_CDS: 1.09 Total: -0.03 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 3.32 Total: 2.71 kcal Atomic # 7 Polarization: -80.57 SS G_CDS: -1.15 Total: -81.71 kcal Atomic # 9 Polarization: -16.07 SS G_CDS: 1.44 Total: -14.63 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 1.71 Total: 42.69 kcal Total: -57.39 6.41 -50.98 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238501912.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.579 kcal (2) G-P(sol) polarization free energy of solvation -57.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds