Wall clock time and date at job start Mon Mar 30 2020 05:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38820 * 120.28049 * 2 1 4 4 C 1.38159 * 118.68901 * 180.02562 * 3 2 1 5 5 C 1.50696 * 120.39935 * 180.27829 * 4 3 2 6 6 F 1.39898 * 109.47522 * 119.71756 * 5 4 3 7 7 F 1.39907 * 109.47161 * 239.71725 * 5 4 3 8 8 C 1.40845 * 119.20142 * 359.97438 * 4 3 2 9 9 C 1.41446 * 119.75388 * 180.02562 * 8 4 3 10 10 H 1.07994 * 120.00174 * 0.02562 * 9 8 4 11 11 C 1.40028 * 119.99492 * 180.02562 * 9 8 4 12 12 N 1.30734 * 120.00077 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99781 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47255 * 89.99375 * 13 11 9 15 15 H 1.48502 * 109.47276 * 209.99786 * 13 11 9 16 16 H 1.48502 * 109.46911 * 329.99782 * 13 11 9 17 17 N 1.33339 * 120.48342 * 0.02562 * 8 4 3 18 18 C 1.32378 * 121.41398 * 359.97438 * 17 8 4 19 19 C 1.43200 * 119.61791 * 179.97438 * 18 17 8 20 20 N 3.47887 * 80.35387 * 180.02562 * 2 1 3 21 21 H 1.09000 * 109.47136 * 269.97998 * 1 2 3 22 22 H 1.09008 * 109.46988 * 29.97657 * 1 2 3 23 23 H 1.09005 * 109.47423 * 149.97387 * 1 2 3 24 24 H 1.07999 * 120.65324 * 0.03967 * 3 2 1 25 25 H 1.08997 * 109.47046 * 359.71639 * 5 4 3 26 26 H 0.97006 * 119.99636 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1988 0.0000 4 6 3.5880 1.1604 -0.0005 5 6 4.3864 2.4385 0.0058 6 9 5.1883 2.4819 1.1513 7 9 5.1973 2.4875 -1.1333 8 6 4.2407 -0.0876 -0.0005 9 6 5.6542 -0.1405 -0.0005 10 1 6.2288 0.7738 -0.0001 11 6 6.3084 -1.3786 -0.0011 12 7 5.6127 -2.4855 -0.0010 13 14 8.1751 -1.4486 -0.0003 14 1 8.6692 -1.4679 1.3999 15 1 8.6246 -2.6784 -0.7009 16 1 8.7154 -0.2550 -0.6994 17 7 3.5360 -1.2196 -0.0005 18 6 2.2123 -1.2082 0.0000 19 6 1.4939 -2.4469 -0.0006 20 7 0.9240 -3.4297 -0.0015 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3633 0.8903 -0.5135 23 1 -0.3634 -0.8898 -0.5143 24 1 1.6823 2.1428 0.0006 25 1 3.7073 3.2911 0.0052 26 1 6.0660 -3.3432 -0.0010 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238502171.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:14 Heat of formation + Delta-G solvation = -48.486996 kcal Electronic energy + Delta-G solvation = -16361.350791 eV Core-core repulsion = 13268.584753 eV Total energy + Delta-G solvation = -3092.766038 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.07538 -46.03153 -38.91869 -35.80796 -34.15989 -32.02263 -31.83225 -28.05332 -25.81856 -24.97924 -22.39308 -20.64653 -18.50637 -17.59911 -16.39039 -16.29026 -15.83301 -15.00543 -14.80364 -13.79064 -13.64033 -12.96484 -12.81126 -12.64841 -12.44429 -12.44069 -12.31952 -11.91603 -11.81100 -11.78186 -11.41486 -11.20048 -11.11118 -10.89015 -10.40106 -10.00691 -9.55064 -8.67441 -8.13343 -7.90786 -6.76318 -4.86185 1.72261 2.53882 2.98090 2.99423 3.04532 3.37209 3.71089 3.78251 4.53407 4.56163 4.67535 5.12623 5.37888 5.54003 5.77944 5.83510 5.97046 6.01166 6.19020 6.30826 6.46736 6.62568 6.88861 7.08944 7.16780 7.47678 7.90992 8.13767 8.25245 8.49641 9.49876 9.96158 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.019660 B = 0.011818 C = 0.007749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.897044 B = 2368.616838 C = 3612.716786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.255 4.255 3 C -0.006 4.006 4 C -0.321 4.321 5 C 0.338 3.662 6 F -0.207 7.207 7 F -0.207 7.207 8 C 0.269 3.731 9 C -0.392 4.392 10 H 0.100 0.900 11 C 0.062 3.938 12 N -0.701 5.701 13 Si 0.915 3.085 14 H -0.264 1.264 15 H -0.273 1.273 16 H -0.256 1.256 17 N -0.441 5.441 18 C 0.228 3.772 19 C 0.299 3.701 20 N -0.445 5.445 21 H 0.050 0.950 22 H 0.054 0.946 23 H 0.048 0.952 24 H 0.114 0.886 25 H 0.094 0.906 26 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.398 7.158 0.002 7.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.264 4.264 3 C -0.030 4.030 4 C -0.328 4.328 5 C 0.283 3.717 6 F -0.189 7.189 7 F -0.189 7.189 8 C 0.146 3.854 9 C -0.421 4.421 10 H 0.118 0.882 11 C -0.166 4.166 12 N -0.320 5.320 13 Si 0.738 3.262 14 H -0.189 1.189 15 H -0.198 1.198 16 H -0.179 1.179 17 N -0.154 5.154 18 C 0.078 3.922 19 C -0.017 4.017 20 N -0.123 5.123 21 H 0.069 0.931 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.132 0.868 25 H 0.111 0.889 26 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.650 4.630 -0.005 4.916 hybrid contribution 0.707 1.016 0.015 1.238 sum -0.943 5.646 0.010 5.725 Atomic orbital electron populations 1.20366 0.92125 1.01046 1.00583 1.19724 0.95174 0.92162 1.19327 1.20414 0.92197 0.96387 0.94022 1.20934 0.94103 0.95154 1.22561 1.19841 0.83612 0.97183 0.71032 1.92949 1.76768 1.97620 1.51541 1.92952 1.76293 1.97596 1.52024 1.18100 0.93434 0.84705 0.89206 1.20043 0.89914 0.94365 1.37742 0.88226 1.26218 1.01684 0.95239 0.93438 1.70076 1.37822 0.98706 1.25386 0.86171 0.81027 0.79331 0.79705 1.18931 1.19791 1.17933 1.68792 1.02324 1.29413 1.14908 1.16635 0.90959 0.85309 0.99295 1.25563 0.91580 0.91964 0.92603 1.81046 1.11622 1.10343 1.09307 0.93078 0.92654 0.93304 0.86820 0.88850 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.32 9.61 36.00 0.35 -0.97 15 2 C -0.26 -5.01 5.95 -103.79 -0.62 -5.62 15 3 C -0.01 -0.11 9.45 -39.39 -0.37 -0.48 15 4 C -0.32 -6.84 5.44 -103.67 -0.56 -7.40 15 5 C 0.34 6.27 4.93 36.00 0.18 6.45 15 6 F -0.21 -4.15 16.05 2.25 0.04 -4.11 15 7 F -0.21 -4.15 16.02 2.25 0.04 -4.12 15 8 C 0.27 6.72 6.54 -85.01 -0.56 6.17 15 9 C -0.39 -9.80 8.19 -37.69 -0.31 -10.10 15 10 H 0.10 2.41 5.49 -52.49 -0.29 2.12 15 11 C 0.06 1.49 5.50 -17.35 -0.10 1.40 15 12 N -0.70 -17.69 11.46 55.55 0.64 -17.06 15 13 Si 0.91 17.86 29.56 -169.99 -5.02 12.83 15 14 H -0.26 -5.10 7.11 56.52 0.40 -4.69 15 15 H -0.27 -5.20 7.11 56.52 0.40 -4.80 15 16 H -0.26 -4.95 7.11 56.52 0.40 -4.55 15 17 N -0.44 -11.34 7.77 -9.06 -0.07 -11.41 15 18 C 0.23 5.21 6.59 -85.08 -0.56 4.65 15 19 C 0.30 6.63 13.98 -22.47 -0.31 6.32 15 20 N -0.44 -9.86 18.54 41.84 0.78 -9.08 15 21 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 22 H 0.05 0.74 8.09 -51.92 -0.42 0.32 15 23 H 0.05 0.78 7.08 -51.93 -0.37 0.41 15 24 H 0.11 1.66 7.99 -52.49 -0.42 1.24 15 25 H 0.09 1.31 7.92 -51.93 -0.41 0.90 15 26 H 0.28 6.45 8.29 -40.82 -0.34 6.12 15 LS Contribution 249.92 15.07 3.77 3.77 Total: -1.00 -27.21 249.92 -4.17 -31.39 By element: Atomic # 1 Polarization: -1.14 SS G_CDS: -1.46 Total: -2.60 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -2.86 Total: 0.39 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 1.34 Total: -37.55 kcal Atomic # 9 Polarization: -8.30 SS G_CDS: 0.07 Total: -8.23 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.02 Total: 12.83 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -27.21 -4.17 -31.39 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238502171.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.100 kcal (2) G-P(sol) polarization free energy of solvation -27.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds