Wall clock time and date at job start Mon Mar 30 2020 05:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38820 * 120.28049 * 2 1 4 4 C 1.38159 * 118.68901 * 180.02562 * 3 2 1 5 5 C 1.50696 * 120.39935 * 180.27829 * 4 3 2 6 6 F 1.39898 * 109.47522 * 119.71756 * 5 4 3 7 7 F 1.39907 * 109.47161 * 239.71725 * 5 4 3 8 8 C 1.40845 * 119.20142 * 359.97438 * 4 3 2 9 9 C 1.41446 * 119.75388 * 180.02562 * 8 4 3 10 10 H 1.07994 * 120.00174 * 0.02562 * 9 8 4 11 11 C 1.40028 * 119.99492 * 180.02562 * 9 8 4 12 12 N 1.30734 * 120.00077 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99781 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47255 * 89.99375 * 13 11 9 15 15 H 1.48502 * 109.47276 * 209.99786 * 13 11 9 16 16 H 1.48502 * 109.46911 * 329.99782 * 13 11 9 17 17 N 1.33339 * 120.48342 * 0.02562 * 8 4 3 18 18 C 1.32378 * 121.41398 * 359.97438 * 17 8 4 19 19 C 1.43200 * 119.61791 * 179.97438 * 18 17 8 20 20 N 3.47887 * 80.35387 * 180.02562 * 2 1 3 21 21 H 1.09000 * 109.47136 * 269.97998 * 1 2 3 22 22 H 1.09008 * 109.46988 * 29.97657 * 1 2 3 23 23 H 1.09005 * 109.47423 * 149.97387 * 1 2 3 24 24 H 1.07999 * 120.65324 * 0.03967 * 3 2 1 25 25 H 1.08997 * 109.47046 * 359.71639 * 5 4 3 26 26 H 0.97006 * 119.99636 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1988 0.0000 4 6 3.5880 1.1604 -0.0005 5 6 4.3864 2.4385 0.0058 6 9 5.1883 2.4819 1.1513 7 9 5.1973 2.4875 -1.1333 8 6 4.2407 -0.0876 -0.0005 9 6 5.6542 -0.1405 -0.0005 10 1 6.2288 0.7738 -0.0001 11 6 6.3084 -1.3786 -0.0011 12 7 5.6127 -2.4855 -0.0010 13 14 8.1751 -1.4486 -0.0003 14 1 8.6692 -1.4679 1.3999 15 1 8.6246 -2.6784 -0.7009 16 1 8.7154 -0.2550 -0.6994 17 7 3.5360 -1.2196 -0.0005 18 6 2.2123 -1.2082 0.0000 19 6 1.4939 -2.4469 -0.0006 20 7 0.9240 -3.4297 -0.0015 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3633 0.8903 -0.5135 23 1 -0.3634 -0.8898 -0.5143 24 1 1.6823 2.1428 0.0006 25 1 3.7073 3.2911 0.0052 26 1 6.0660 -3.3432 -0.0010 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238502171.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:13 Heat of formation + Delta-G solvation = -63.955325 kcal Electronic energy + Delta-G solvation = -16362.021549 eV Core-core repulsion = 13268.584753 eV Total energy + Delta-G solvation = -3093.436795 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.56974 -47.54283 -40.60167 -37.55889 -35.84441 -33.66278 -33.46846 -29.66182 -27.36643 -26.57182 -24.05913 -22.20968 -20.15963 -19.31672 -17.94298 -17.79377 -17.38275 -16.64229 -16.44001 -15.45136 -15.27595 -14.49128 -14.38597 -14.21563 -13.98222 -13.96335 -13.87898 -13.60611 -13.42174 -13.16372 -12.96096 -12.76756 -12.72567 -12.47190 -11.95647 -11.55257 -11.22790 -10.32373 -9.82747 -9.60103 -8.47146 -6.64813 0.01775 0.92522 1.38408 1.44447 1.52704 1.60639 1.98473 2.17658 2.79624 2.88903 3.29762 3.64937 3.68586 4.08953 4.34953 4.42075 4.53326 4.61081 4.72610 4.92899 4.96867 5.17995 5.24297 5.50303 5.56418 5.90819 6.10686 6.38751 6.53366 6.73474 7.79531 8.27614 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.019660 B = 0.011818 C = 0.007749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.897044 B = 2368.616838 C = 3612.716786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.233 4.233 3 C -0.001 4.001 4 C -0.324 4.324 5 C 0.332 3.668 6 F -0.219 7.219 7 F -0.219 7.219 8 C 0.243 3.757 9 C -0.435 4.435 10 H 0.097 0.903 11 C 0.024 3.976 12 N -0.748 5.748 13 Si 0.980 3.020 14 H -0.260 1.260 15 H -0.267 1.267 16 H -0.253 1.253 17 N -0.487 5.487 18 C 0.195 3.805 19 C 0.302 3.698 20 N -0.453 5.453 21 H 0.067 0.933 22 H 0.091 0.909 23 H 0.041 0.959 24 H 0.171 0.829 25 H 0.157 0.843 26 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.682 9.430 0.014 9.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.241 4.241 3 C -0.025 4.025 4 C -0.330 4.330 5 C 0.278 3.722 6 F -0.200 7.200 7 F -0.200 7.200 8 C 0.118 3.882 9 C -0.465 4.465 10 H 0.115 0.885 11 C -0.199 4.199 12 N -0.370 5.370 13 Si 0.800 3.200 14 H -0.185 1.185 15 H -0.192 1.192 16 H -0.177 1.177 17 N -0.201 5.201 18 C 0.048 3.952 19 C -0.014 4.014 20 N -0.131 5.131 21 H 0.086 0.914 22 H 0.109 0.891 23 H 0.060 0.940 24 H 0.189 0.811 25 H 0.173 0.827 26 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.982 6.896 0.008 7.513 hybrid contribution 0.871 0.420 0.014 0.967 sum -2.112 7.316 0.022 7.615 Atomic orbital electron populations 1.20464 0.88920 1.02536 1.02087 1.20319 0.97446 0.91296 1.15066 1.21001 0.91214 0.98308 0.91991 1.21437 0.95828 0.95246 1.20523 1.20396 0.83737 0.97878 0.70140 1.92924 1.77250 1.97643 1.52193 1.92927 1.76792 1.97618 1.52690 1.18543 0.94000 0.86143 0.89522 1.20191 0.90583 0.94737 1.40990 0.88476 1.27009 1.05840 0.94637 0.92441 1.70177 1.39430 0.99168 1.28176 0.85213 0.75710 0.79325 0.79733 1.18492 1.19172 1.17693 1.68656 1.03777 1.30729 1.16935 1.17005 0.90762 0.86614 1.00796 1.25671 0.91400 0.91997 0.92335 1.81027 1.12119 1.10196 1.09787 0.91418 0.89060 0.93960 0.81124 0.82651 0.90709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.25 9.61 71.23 0.68 -1.57 15 2 C -0.23 -8.45 5.95 -19.32 -0.11 -8.56 15 3 C 0.00 -0.04 9.45 22.39 0.21 0.17 15 4 C -0.32 -13.14 5.44 -19.25 -0.10 -13.24 15 5 C 0.33 11.37 4.93 71.23 0.35 11.72 15 6 F -0.22 -8.39 16.05 44.97 0.72 -7.67 15 7 F -0.22 -8.42 16.02 44.97 0.72 -7.70 15 8 C 0.24 12.29 6.54 40.34 0.26 12.55 15 9 C -0.44 -22.39 8.19 23.49 0.19 -22.20 15 10 H 0.10 4.82 5.49 -2.91 -0.02 4.81 15 11 C 0.02 1.18 5.50 85.29 0.47 1.65 15 12 N -0.75 -39.66 11.46 21.84 0.25 -39.41 15 13 Si 0.98 37.77 29.56 68.60 2.03 39.80 15 14 H -0.26 -9.71 7.11 99.48 0.71 -9.00 15 15 H -0.27 -9.87 7.11 99.48 0.71 -9.16 15 16 H -0.25 -9.50 7.11 99.48 0.71 -8.79 15 17 N -0.49 -25.62 7.77 -182.58 -1.42 -27.04 15 18 C 0.20 8.86 6.59 40.71 0.27 9.12 15 19 C 0.30 13.44 13.98 88.33 1.24 14.68 15 20 N -0.45 -20.11 18.54 19.00 0.35 -19.75 15 21 H 0.07 1.68 8.14 -2.39 -0.02 1.67 15 22 H 0.09 1.88 8.09 -2.38 -0.02 1.86 15 23 H 0.04 1.22 7.08 -2.38 -0.02 1.21 15 24 H 0.17 3.72 7.99 -2.91 -0.02 3.70 15 25 H 0.16 3.45 7.92 -2.39 -0.02 3.43 15 26 H 0.28 13.68 8.29 -92.70 -0.77 12.91 15 Total: -1.00 -62.17 249.92 7.35 -54.82 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: 1.24 Total: 2.63 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 3.46 Total: 4.32 kcal Atomic # 7 Polarization: -85.39 SS G_CDS: -0.82 Total: -86.21 kcal Atomic # 9 Polarization: -16.81 SS G_CDS: 1.44 Total: -15.37 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 2.03 Total: 39.80 kcal Total: -62.17 7.35 -54.82 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238502171.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.138 kcal (2) G-P(sol) polarization free energy of solvation -62.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds