Wall clock time and date at job start Mon Mar 30 2020 05:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38441 * 120.78113 * 2 1 4 4 C 1.39028 * 119.73055 * 179.72652 * 3 2 1 5 5 C 1.50696 * 119.30940 * 180.27677 * 4 3 2 6 6 F 1.39891 * 109.47570 * 210.27696 * 5 4 3 7 7 F 1.39901 * 109.47243 * 330.27898 * 5 4 3 8 8 N 1.31302 * 121.38136 * 0.56230 * 4 3 2 9 9 C 1.33617 * 121.67314 * 359.71848 * 8 4 3 10 10 C 1.40869 * 119.94383 * 180.02562 * 9 8 4 11 11 H 1.07996 * 119.99413 * 179.97438 * 10 9 8 12 12 C 1.40275 * 120.00123 * 359.97362 * 10 9 8 13 13 N 1.30610 * 120.00314 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00084 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46871 * 60.00370 * 14 12 10 16 16 H 1.48497 * 109.47354 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46953 * 300.00308 * 14 12 10 18 18 C 1.39853 * 120.77443 * 180.27592 * 2 1 3 19 19 C 1.43194 * 120.67148 * 0.02602 * 18 2 1 20 20 N 3.49492 * 81.57651 * 180.29333 * 2 1 3 21 21 H 1.08999 * 109.47015 * 269.72505 * 1 2 3 22 22 H 1.09000 * 109.46646 * 29.71658 * 1 2 3 23 23 H 1.09000 * 109.47248 * 149.72375 * 1 2 3 24 24 H 1.08002 * 120.13447 * 359.97107 * 3 2 1 25 25 H 1.09001 * 109.46974 * 90.27206 * 5 4 3 26 26 H 0.97001 * 120.00553 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2155 1.1894 0.0000 4 6 3.6056 1.1639 0.0058 5 6 4.3672 2.4642 0.0121 6 9 5.5885 2.2926 -0.6482 7 9 3.6173 3.4471 -0.6427 8 7 4.2687 0.0306 0.0002 9 6 3.6415 -1.1492 -0.0055 10 6 4.3893 -2.3430 -0.0108 11 1 3.8832 -3.2970 -0.0151 12 6 5.7911 -2.2926 -0.0105 13 7 6.4031 -1.1387 -0.0049 14 14 6.7827 -3.8756 -0.0182 15 1 6.4523 -4.6607 -1.2346 16 1 8.2320 -3.5520 -0.0160 17 1 6.4521 -4.6727 1.1904 18 6 2.2226 -1.2016 -0.0058 19 6 1.5382 -2.4593 -0.0124 20 7 0.9951 -3.4572 -0.0177 21 1 -0.3633 -0.0049 1.0277 22 1 -0.3632 0.8925 -0.5094 23 1 -0.3634 -0.8875 -0.5181 24 1 1.6906 2.1332 -0.0005 25 1 4.5507 2.7728 1.0412 26 1 7.3725 -1.1038 -0.0043 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238515393.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:43 Heat of formation + Delta-G solvation = -69.065588 kcal Electronic energy + Delta-G solvation = -16232.455813 eV Core-core repulsion = 13138.797420 eV Total energy + Delta-G solvation = -3093.658393 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.72918 -47.73795 -40.57424 -37.26943 -36.01162 -34.30582 -32.73079 -28.79539 -28.22389 -27.39929 -23.48854 -22.42500 -19.46094 -19.14252 -18.26392 -18.10525 -17.76930 -16.81939 -16.48571 -15.21797 -15.11205 -14.76508 -14.58420 -14.10354 -14.02271 -13.85826 -13.76381 -13.65416 -13.44898 -13.32151 -13.00585 -12.82973 -12.77841 -12.56215 -12.08682 -11.70858 -11.31393 -10.01447 -9.84313 -9.75891 -8.54592 -6.79626 0.11582 0.88073 1.36698 1.47400 1.48110 1.96599 2.13360 2.27487 2.66875 2.86247 3.34096 3.54516 3.60706 3.83302 4.17998 4.23251 4.43185 4.66936 4.75777 4.80234 4.93963 5.03327 5.19867 5.32289 5.64743 5.86575 5.98117 6.37250 6.63205 6.85669 7.77472 8.17800 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.017785 B = 0.012015 C = 0.007253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.985398 B = 2329.944185 C = 3859.304373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.039 3.961 3 C -0.284 4.284 4 C 0.095 3.905 5 C 0.329 3.671 6 F -0.204 7.204 7 F -0.200 7.200 8 N -0.479 5.479 9 C 0.259 3.741 10 C -0.427 4.427 11 H 0.082 0.918 12 C 0.029 3.971 13 N -0.714 5.714 14 Si 0.979 3.021 15 H -0.263 1.263 16 H -0.255 1.255 17 H -0.260 1.260 18 C -0.243 4.243 19 C 0.311 3.689 20 N -0.516 5.516 21 H 0.088 0.912 22 H 0.097 0.903 23 H 0.052 0.948 24 H 0.148 0.852 25 H 0.156 0.844 26 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.191 6.577 1.685 6.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.030 3.970 3 C -0.307 4.307 4 C -0.058 4.058 5 C 0.275 3.725 6 F -0.185 7.185 7 F -0.182 7.182 8 N -0.191 5.191 9 C 0.135 3.865 10 C -0.455 4.455 11 H 0.100 0.900 12 C -0.198 4.198 13 N -0.333 5.333 14 Si 0.799 3.201 15 H -0.188 1.188 16 H -0.178 1.178 17 H -0.185 1.185 18 C -0.252 4.252 19 C 0.001 3.999 20 N -0.196 5.196 21 H 0.107 0.893 22 H 0.115 0.885 23 H 0.071 0.929 24 H 0.166 0.834 25 H 0.173 0.827 26 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.864 5.104 1.641 5.430 hybrid contribution -0.116 -0.348 -0.207 0.421 sum -0.980 4.755 1.434 5.063 Atomic orbital electron populations 1.20850 0.88957 1.03292 1.03507 1.20118 0.96630 0.90669 0.89573 1.21072 0.93020 0.98277 1.18337 1.22245 0.92525 0.95009 0.96056 1.20332 0.74893 0.83247 0.94069 1.92976 1.45630 1.95875 1.84047 1.92947 1.77155 1.63469 1.84609 1.68372 1.37376 0.96355 1.16997 1.18547 0.87374 0.91711 0.88852 1.19999 0.92539 0.92806 1.40205 0.90018 1.26927 0.98801 1.01244 0.92830 1.70040 1.11572 1.27478 1.24164 0.85277 0.77615 0.77146 0.80051 1.18792 1.17844 1.18461 1.16880 0.93312 0.86917 1.28118 1.25587 0.90996 0.92371 0.90962 1.81025 1.11783 1.11424 1.15368 0.89325 0.88458 0.92927 0.83409 0.82713 0.89645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.19 9.68 71.24 0.69 -2.50 15 2 C 0.04 1.51 5.95 -19.42 -0.12 1.39 15 3 C -0.28 -10.43 9.13 22.51 0.21 -10.23 15 4 C 0.09 3.91 6.59 42.83 0.28 4.20 15 5 C 0.33 11.19 5.72 71.23 0.41 11.59 15 6 F -0.20 -8.21 17.04 44.97 0.77 -7.44 15 7 F -0.20 -6.34 16.43 44.97 0.74 -5.61 15 8 N -0.48 -23.66 7.43 -176.45 -1.31 -24.97 15 9 C 0.26 13.17 6.58 40.44 0.27 13.44 15 10 C -0.43 -21.87 8.78 23.41 0.21 -21.66 15 11 H 0.08 4.18 6.88 -2.91 -0.02 4.16 15 12 C 0.03 1.37 5.50 85.37 0.47 1.84 15 13 N -0.71 -34.68 11.46 21.88 0.25 -34.43 15 14 Si 0.98 35.99 29.56 68.60 2.03 38.02 15 15 H -0.26 -9.72 7.11 99.48 0.71 -9.01 15 16 H -0.25 -8.58 7.11 99.48 0.71 -7.88 15 17 H -0.26 -9.47 7.11 99.48 0.71 -8.76 15 18 C -0.24 -11.15 5.81 -20.72 -0.12 -11.28 15 19 C 0.31 14.30 12.53 88.33 1.11 15.41 15 20 N -0.52 -24.08 18.54 19.00 0.35 -23.73 15 21 H 0.09 2.28 8.14 -2.39 -0.02 2.26 15 22 H 0.10 2.26 8.10 -2.39 -0.02 2.24 15 23 H 0.05 1.63 7.19 -2.39 -0.02 1.61 15 24 H 0.15 4.42 7.57 -2.91 -0.02 4.39 15 25 H 0.16 4.01 8.14 -2.39 -0.02 4.00 15 26 H 0.29 12.73 8.29 -92.71 -0.77 11.96 15 Total: -1.00 -58.43 252.34 7.46 -50.98 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: 1.23 Total: 4.97 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: 3.40 Total: 2.21 kcal Atomic # 7 Polarization: -82.42 SS G_CDS: -0.71 Total: -83.13 kcal Atomic # 9 Polarization: -14.55 SS G_CDS: 1.51 Total: -13.05 kcal Atomic # 14 Polarization: 35.99 SS G_CDS: 2.03 Total: 38.02 kcal Total: -58.43 7.46 -50.98 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238515393.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.087 kcal (2) G-P(sol) polarization free energy of solvation -58.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds