Wall clock time and date at job start Mon Mar 30 2020 05:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38604 * 120.30448 * 2 1 4 4 N 1.31408 * 121.17031 * 180.02562 * 3 2 1 5 5 C 1.33628 * 121.84978 * 0.02562 * 4 3 2 6 6 C 1.41397 * 119.76339 * 179.72397 * 5 4 3 7 7 H 1.08002 * 120.00115 * 173.00428 * 6 5 4 8 8 C 1.40057 * 120.00221 * 352.99644 * 6 5 4 9 9 N 1.30732 * 119.99660 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00169 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47237 * 90.00282 * 10 8 6 12 12 H 1.48502 * 109.47307 * 210.00722 * 10 8 6 13 13 H 1.48504 * 109.47159 * 330.00156 * 10 8 6 14 14 C 1.40511 * 120.47077 * 0.02562 * 5 4 3 15 15 C 1.50698 * 120.59610 * 179.97438 * 14 5 4 16 16 F 1.39909 * 109.46717 * 301.73558 * 15 14 5 17 17 F 1.39896 * 109.47188 * 61.73392 * 15 14 5 18 18 C 1.39513 * 118.81158 * 359.97438 * 14 5 4 19 19 C 1.43193 * 120.84505 * 179.97438 * 18 14 5 20 20 N 3.50033 * 81.26370 * 180.02562 * 2 1 3 21 21 H 1.09004 * 109.47305 * 90.00111 * 1 2 3 22 22 H 1.09002 * 109.47465 * 209.99986 * 1 2 3 23 23 H 1.09000 * 109.47429 * 330.00439 * 1 2 3 24 24 H 1.08000 * 119.41693 * 359.97438 * 3 2 1 25 25 H 0.96994 * 119.99499 * 179.97438 * 9 8 6 26 26 H 1.08999 * 109.47170 * 181.73828 * 15 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2064 1.1966 0.0000 4 7 3.5203 1.2165 -0.0005 5 6 4.2425 0.0922 -0.0015 6 6 5.6546 0.1650 -0.0080 7 1 6.2422 -0.7341 0.1051 8 6 6.2913 1.4031 -0.1611 9 7 5.5800 2.4914 -0.2976 10 14 8.1568 1.4992 -0.1703 11 1 8.6532 1.3518 -1.5621 12 1 8.5875 2.8126 0.3725 13 1 8.7127 0.4094 0.6716 14 6 3.6087 -1.1618 -0.0027 15 6 4.4204 -2.4315 -0.0044 16 9 5.2557 -2.4494 -1.1267 17 9 5.1983 -2.4893 1.1569 18 6 2.2144 -1.2105 -0.0022 19 6 1.5235 -2.4647 -0.0038 20 7 0.9753 -3.4597 -0.0015 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 1.6618 2.1293 -0.0004 25 1 6.0210 3.3488 -0.4032 26 1 3.7506 -3.2909 -0.0363 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238516200.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:08 Heat of formation + Delta-G solvation = -63.258235 kcal Electronic energy + Delta-G solvation = -16476.167581 eV Core-core repulsion = 13382.761014 eV Total energy + Delta-G solvation = -3093.406567 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.79721 -47.75838 -40.61578 -37.81944 -35.82747 -33.62327 -33.54692 -29.73525 -27.56790 -25.99705 -24.68726 -21.98180 -20.70340 -18.80316 -18.03416 -18.02098 -17.53107 -16.86846 -16.46470 -15.44309 -15.34387 -14.67725 -14.47762 -14.36645 -14.17530 -14.10206 -14.08965 -13.68783 -13.46456 -13.28068 -13.02056 -12.77868 -12.71921 -12.55938 -11.97401 -11.61243 -11.20221 -10.36567 -9.73390 -9.58015 -8.46961 -6.64552 0.00243 0.65174 1.41758 1.46172 1.49430 1.55195 2.13315 2.20901 2.74044 2.80874 2.96231 3.45026 3.62278 3.79251 4.26755 4.30381 4.40215 4.51166 4.64948 4.94233 5.04463 5.13353 5.20783 5.34411 5.49689 5.84183 6.15314 6.29220 6.48220 6.75690 7.93573 8.29335 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.026411 B = 0.010418 C = 0.007852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.908631 B = 2686.966231 C = 3564.914368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.231 4.231 3 C 0.145 3.855 4 N -0.493 5.493 5 C 0.248 3.752 6 C -0.435 4.435 7 H 0.089 0.911 8 C 0.030 3.970 9 N -0.734 5.734 10 Si 0.979 3.021 11 H -0.261 1.261 12 H -0.260 1.260 13 H -0.261 1.261 14 C -0.317 4.317 15 C 0.338 3.662 16 F -0.208 7.208 17 F -0.210 7.210 18 C 0.061 3.939 19 C 0.280 3.720 20 N -0.441 5.441 21 H 0.068 0.932 22 H 0.047 0.953 23 H 0.086 0.914 24 H 0.166 0.834 25 H 0.288 0.712 26 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.425 -0.569 0.075 2.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.237 4.237 3 C -0.024 4.024 4 N -0.204 5.204 5 C 0.126 3.874 6 C -0.464 4.464 7 H 0.107 0.893 8 C -0.195 4.195 9 N -0.354 5.354 10 Si 0.799 3.201 11 H -0.186 1.186 12 H -0.184 1.184 13 H -0.185 1.185 14 C -0.326 4.326 15 C 0.284 3.716 16 F -0.190 7.190 17 F -0.192 7.192 18 C 0.051 3.949 19 C -0.034 4.034 20 N -0.117 5.117 21 H 0.087 0.913 22 H 0.066 0.934 23 H 0.105 0.895 24 H 0.183 0.817 25 H 0.099 0.901 26 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.702 -1.089 0.051 2.914 hybrid contribution 0.678 -0.368 -0.030 0.772 sum -2.024 -1.457 0.021 2.494 Atomic orbital electron populations 1.20461 0.88811 1.02599 1.02149 1.20613 0.97550 0.91399 1.14186 1.23144 0.90638 0.97029 0.91630 1.68689 1.06459 1.29382 1.15853 1.18436 0.94261 0.85686 0.88976 1.20145 0.90664 0.95517 1.40058 0.89330 1.26890 1.05544 0.94483 0.92588 1.70101 1.39359 0.99650 1.26332 0.85239 0.75812 0.79253 0.79830 1.18560 1.18389 1.18462 1.20960 0.92516 0.95810 1.23325 1.19919 0.83570 0.97241 0.70895 1.92941 1.75036 1.97698 1.53294 1.92932 1.78110 1.97546 1.50593 1.15686 0.90383 0.86945 1.01929 1.25747 0.92340 0.92455 0.92839 1.81164 1.09643 1.11248 1.09687 0.91304 0.93404 0.89522 0.81701 0.90134 0.87323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.25 9.65 71.24 0.69 -1.57 15 2 C -0.23 -8.40 5.96 -19.30 -0.11 -8.52 15 3 C 0.15 5.80 10.85 84.84 0.92 6.72 15 4 N -0.49 -24.23 7.88 -189.34 -1.49 -25.72 15 5 C 0.25 12.58 6.53 40.20 0.26 12.85 15 6 C -0.43 -22.29 8.16 23.49 0.19 -22.10 15 7 H 0.09 4.50 5.56 -2.91 -0.02 4.49 15 8 C 0.03 1.41 5.49 85.30 0.47 1.88 15 9 N -0.73 -35.96 11.49 21.84 0.25 -35.71 15 10 Si 0.98 36.40 29.56 68.60 2.03 38.42 15 11 H -0.26 -9.44 7.11 99.48 0.71 -8.73 15 12 H -0.26 -9.00 7.11 99.48 0.71 -8.29 15 13 H -0.26 -9.74 7.11 99.48 0.71 -9.03 15 14 C -0.32 -14.30 5.47 -19.00 -0.10 -14.40 15 15 C 0.34 14.05 4.81 71.24 0.34 14.39 15 16 F -0.21 -9.07 16.02 44.97 0.72 -8.35 15 17 F -0.21 -9.12 16.08 44.97 0.72 -8.39 15 18 C 0.06 2.41 5.75 -21.25 -0.12 2.29 15 19 C 0.28 10.23 12.28 88.33 1.08 11.32 15 20 N -0.44 -16.06 18.54 19.00 0.35 -15.71 15 21 H 0.07 1.71 8.14 -2.39 -0.02 1.69 15 22 H 0.05 1.30 7.17 -2.39 -0.02 1.28 15 23 H 0.09 1.94 8.09 -2.39 -0.02 1.92 15 24 H 0.17 5.40 8.06 -2.91 -0.02 5.38 15 25 H 0.29 12.58 8.29 -92.71 -0.77 11.81 15 26 H 0.11 3.93 6.56 -2.39 -0.02 3.92 15 Total: -1.00 -55.61 247.70 7.44 -48.17 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: 1.24 Total: 4.44 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 3.62 Total: 2.86 kcal Atomic # 7 Polarization: -76.25 SS G_CDS: -0.89 Total: -77.14 kcal Atomic # 9 Polarization: -18.19 SS G_CDS: 1.44 Total: -16.75 kcal Atomic # 14 Polarization: 36.40 SS G_CDS: 2.03 Total: 38.42 kcal Total: -55.61 7.44 -48.17 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238516200.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.093 kcal (2) G-P(sol) polarization free energy of solvation -55.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds