Wall clock time and date at job start Mon Mar 30 2020 05:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31139 * 119.66309 * 2 1 4 4 C 1.33799 * 121.54166 * 180.26916 * 3 2 1 5 5 C 1.41027 * 119.65696 * 179.74561 * 4 3 2 6 6 H 1.08003 * 119.99652 * 164.73933 * 5 4 3 7 7 C 1.40244 * 120.00059 * 344.73518 * 5 4 3 8 8 N 1.30619 * 120.00147 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99990 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47152 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.47219 * 300.00018 * 9 7 5 12 12 H 1.48495 * 109.47197 * 59.99808 * 9 7 5 13 13 C 1.40854 * 120.68273 * 359.47243 * 4 3 2 14 14 C 1.50698 * 120.36405 * 180.23530 * 13 4 3 15 15 F 1.39896 * 109.47066 * 199.72580 * 14 13 4 16 16 F 1.39900 * 109.47000 * 319.72445 * 14 13 4 17 17 C 1.36716 * 119.26795 * 0.24890 * 13 4 3 18 18 C 1.40278 * 119.66940 * 179.74121 * 2 1 3 19 19 C 1.43208 * 120.36827 * 359.97438 * 18 2 1 20 20 N 3.49360 * 80.30644 * 179.72516 * 2 1 3 21 21 H 1.09001 * 109.47076 * 270.25850 * 1 2 3 22 22 H 1.09000 * 109.47750 * 30.25681 * 1 2 3 23 23 H 1.09006 * 109.47355 * 150.26404 * 1 2 3 24 24 H 0.97004 * 120.00036 * 180.02562 * 8 7 5 25 25 H 1.09002 * 109.47119 * 79.72579 * 14 13 4 26 26 H 1.07998 * 120.71581 * 179.97438 * 17 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1560 1.1395 0.0000 4 6 3.4932 1.1834 -0.0054 5 6 4.1505 2.4311 -0.0106 6 1 5.2015 2.4888 0.2314 7 6 3.4394 3.5970 -0.3300 8 7 2.1682 3.5272 -0.6222 9 14 4.3101 5.2496 -0.3376 10 1 3.3441 6.3164 -0.7040 11 1 4.8617 5.5247 1.0134 12 1 5.4165 5.2216 -1.3277 13 6 4.2513 -0.0037 -0.0001 14 6 5.7572 0.0541 -0.0008 15 9 6.2707 -1.1707 -0.4404 16 9 6.1843 1.0736 -0.8584 17 6 3.6059 -1.2089 0.0055 18 6 2.2013 -1.2189 0.0055 19 6 1.4861 -2.4595 0.0117 20 7 0.9187 -3.4437 0.0165 21 1 -0.3633 0.0046 1.0277 22 1 -0.3634 0.8876 -0.5178 23 1 -0.3634 -0.8924 -0.5097 24 1 1.6764 4.3335 -0.8435 25 1 6.1136 0.2559 1.0093 26 1 4.1640 -2.1335 0.0092 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238517864.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:09 Heat of formation + Delta-G solvation = -54.382420 kcal Electronic energy + Delta-G solvation = -16315.052276 eV Core-core repulsion = 13222.030593 eV Total energy + Delta-G solvation = -3093.021683 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.20333 -46.21167 -38.86979 -35.69074 -34.09620 -32.58769 -30.94505 -28.13470 -26.98719 -24.04311 -22.45033 -20.59852 -18.02636 -17.84784 -16.72001 -16.52572 -15.59844 -15.05273 -14.65775 -14.25420 -13.67174 -13.03363 -12.81876 -12.65613 -12.52980 -12.36083 -12.22784 -12.01699 -11.75082 -11.57002 -11.34464 -11.27066 -11.19076 -10.71692 -10.56599 -10.12988 -9.62072 -8.64754 -8.07115 -7.87836 -6.94165 -5.02589 1.97415 2.45627 2.89038 2.89884 2.92505 3.59213 3.65261 3.89896 4.48439 4.61025 5.02278 5.18024 5.29213 5.57881 5.64725 5.72623 5.82570 6.08909 6.29074 6.43012 6.50355 6.70813 6.91656 7.04188 7.13775 7.47196 7.77418 8.11993 8.35119 8.49654 9.59947 9.80888 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.022039 B = 0.010595 C = 0.007268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.186257 B = 2642.179755 C = 3851.442155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.223 3.777 3 N -0.479 5.479 4 C 0.276 3.724 5 C -0.380 4.380 6 H 0.103 0.897 7 C 0.063 3.937 8 N -0.690 5.690 9 Si 0.917 3.083 10 H -0.273 1.273 11 H -0.259 1.259 12 H -0.258 1.258 13 C -0.333 4.333 14 C 0.336 3.664 15 F -0.218 7.218 16 F -0.198 7.198 17 C 0.035 3.965 18 C -0.260 4.260 19 C 0.296 3.704 20 N -0.504 5.504 21 H 0.069 0.931 22 H 0.078 0.922 23 H 0.057 0.943 24 H 0.285 0.715 25 H 0.101 0.899 26 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.488 2.339 1.552 4.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.067 3.933 3 N -0.190 5.190 4 C 0.155 3.845 5 C -0.408 4.408 6 H 0.121 0.879 7 C -0.167 4.167 8 N -0.308 5.308 9 Si 0.740 3.260 10 H -0.198 1.198 11 H -0.183 1.183 12 H -0.182 1.182 13 C -0.338 4.338 14 C 0.282 3.718 15 F -0.200 7.200 16 F -0.179 7.179 17 C 0.010 3.990 18 C -0.271 4.271 19 C -0.014 4.014 20 N -0.183 5.183 21 H 0.087 0.913 22 H 0.096 0.904 23 H 0.076 0.924 24 H 0.097 0.903 25 H 0.118 0.882 26 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.064 1.810 1.455 3.107 hybrid contribution 1.095 0.230 -0.179 1.133 sum 3.159 2.039 1.276 3.970 Atomic orbital electron populations 1.20654 0.90857 1.02275 1.02075 1.21282 0.95646 0.87574 0.88844 1.68679 1.07882 1.23845 1.18644 1.18227 0.87747 0.91079 0.87496 1.20219 0.97575 0.89976 1.32999 0.87929 1.26281 0.94807 1.01963 0.93654 1.69958 1.07710 1.31273 1.21887 0.86185 0.80184 0.79215 0.80448 1.19775 1.18343 1.18225 1.20504 0.93448 0.95684 1.24186 1.19875 0.90409 0.70822 0.90711 1.92890 1.88745 1.46400 1.91932 1.92953 1.91103 1.59866 1.73975 1.20335 0.92119 0.96552 0.89985 1.16212 0.92053 0.87215 1.31581 1.25769 0.92288 0.92309 0.91083 1.81089 1.10084 1.11634 1.15504 0.91268 0.90352 0.92372 0.90338 0.88157 0.86787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.86 9.77 36.00 0.35 -1.51 15 2 C 0.22 4.87 6.83 -82.12 -0.56 4.31 15 3 N -0.48 -11.55 7.93 -7.06 -0.06 -11.61 15 4 C 0.28 6.55 6.46 -84.96 -0.55 6.00 15 5 C -0.38 -8.68 7.90 -37.77 -0.30 -8.98 15 6 H 0.10 2.17 5.85 -52.48 -0.31 1.86 15 7 C 0.06 1.38 5.48 -17.31 -0.09 1.28 15 8 N -0.69 -15.88 11.58 55.56 0.64 -15.24 15 9 Si 0.92 16.20 29.56 -169.99 -5.03 11.18 15 10 H -0.27 -4.71 7.11 56.52 0.40 -4.31 15 11 H -0.26 -4.49 7.11 56.52 0.40 -4.09 15 12 H -0.26 -4.59 7.11 56.52 0.40 -4.19 15 13 C -0.33 -7.12 5.75 -104.18 -0.60 -7.71 15 14 C 0.34 6.24 5.12 36.00 0.18 6.42 15 15 F -0.22 -4.00 16.26 2.25 0.04 -3.97 15 16 F -0.20 -3.97 14.57 2.25 0.03 -3.94 15 17 C 0.04 0.73 9.19 -39.29 -0.36 0.37 15 18 C -0.26 -5.52 5.78 -106.36 -0.61 -6.13 15 19 C 0.30 6.16 13.82 -22.47 -0.31 5.85 15 20 N -0.50 -10.80 18.54 41.84 0.78 -10.02 15 21 H 0.07 1.17 8.14 -51.93 -0.42 0.74 15 22 H 0.08 1.42 8.14 -51.93 -0.42 1.00 15 23 H 0.06 1.02 7.08 -51.93 -0.37 0.65 15 24 H 0.29 5.89 8.29 -40.82 -0.34 5.56 15 25 H 0.10 1.55 8.14 -51.93 -0.42 1.13 15 26 H 0.11 2.13 7.41 -52.49 -0.39 1.74 15 LS Contribution 248.90 15.07 3.75 3.75 Total: -1.00 -25.70 248.90 -4.16 -29.86 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -1.47 Total: 0.09 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -2.85 Total: -0.11 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 1.36 Total: -36.87 kcal Atomic # 9 Polarization: -7.97 SS G_CDS: 0.07 Total: -7.90 kcal Atomic # 14 Polarization: 16.20 SS G_CDS: -5.03 Total: 11.18 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -25.70 -4.16 -29.86 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238517864.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.521 kcal (2) G-P(sol) polarization free energy of solvation -25.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds