Wall clock time and date at job start Mon Mar 30 2020 05:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31139 * 119.66309 * 2 1 4 4 C 1.33799 * 121.54166 * 180.26916 * 3 2 1 5 5 C 1.41027 * 119.65696 * 179.74561 * 4 3 2 6 6 H 1.08003 * 119.99652 * 164.73933 * 5 4 3 7 7 C 1.40244 * 120.00059 * 344.73518 * 5 4 3 8 8 N 1.30619 * 120.00147 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99990 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47152 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.47219 * 300.00018 * 9 7 5 12 12 H 1.48495 * 109.47197 * 59.99808 * 9 7 5 13 13 C 1.40854 * 120.68273 * 359.47243 * 4 3 2 14 14 C 1.50698 * 120.36405 * 180.23530 * 13 4 3 15 15 F 1.39896 * 109.47066 * 199.72580 * 14 13 4 16 16 F 1.39900 * 109.47000 * 319.72445 * 14 13 4 17 17 C 1.36716 * 119.26795 * 0.24890 * 13 4 3 18 18 C 1.40278 * 119.66940 * 179.74121 * 2 1 3 19 19 C 1.43208 * 120.36827 * 359.97438 * 18 2 1 20 20 N 3.49360 * 80.30644 * 179.72516 * 2 1 3 21 21 H 1.09001 * 109.47076 * 270.25850 * 1 2 3 22 22 H 1.09000 * 109.47750 * 30.25681 * 1 2 3 23 23 H 1.09006 * 109.47355 * 150.26404 * 1 2 3 24 24 H 0.97004 * 120.00036 * 180.02562 * 8 7 5 25 25 H 1.09002 * 109.47119 * 79.72579 * 14 13 4 26 26 H 1.07998 * 120.71581 * 179.97438 * 17 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1560 1.1395 0.0000 4 6 3.4932 1.1834 -0.0054 5 6 4.1505 2.4311 -0.0106 6 1 5.2015 2.4888 0.2314 7 6 3.4394 3.5970 -0.3300 8 7 2.1682 3.5272 -0.6222 9 14 4.3101 5.2496 -0.3376 10 1 3.3441 6.3164 -0.7040 11 1 4.8617 5.5247 1.0134 12 1 5.4165 5.2216 -1.3277 13 6 4.2513 -0.0037 -0.0001 14 6 5.7572 0.0541 -0.0008 15 9 6.2707 -1.1707 -0.4404 16 9 6.1843 1.0736 -0.8584 17 6 3.6059 -1.2089 0.0055 18 6 2.2013 -1.2189 0.0055 19 6 1.4861 -2.4595 0.0117 20 7 0.9187 -3.4437 0.0165 21 1 -0.3633 0.0046 1.0277 22 1 -0.3634 0.8876 -0.5178 23 1 -0.3634 -0.8924 -0.5097 24 1 1.6764 4.3335 -0.8435 25 1 6.1136 0.2559 1.0093 26 1 4.1640 -2.1335 0.0092 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238517864.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:08 Heat of formation + Delta-G solvation = -67.405170 kcal Electronic energy + Delta-G solvation = -16315.616985 eV Core-core repulsion = 13222.030593 eV Total energy + Delta-G solvation = -3093.586392 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.69026 -47.70806 -40.53497 -37.37873 -35.74862 -34.20324 -32.62837 -29.68552 -28.65582 -25.57612 -24.12739 -22.22833 -19.68419 -19.46759 -18.21657 -18.03830 -17.17550 -16.64975 -16.26456 -15.78463 -15.30323 -14.53374 -14.34665 -14.21062 -14.12813 -13.99472 -13.85565 -13.58230 -13.29484 -13.12375 -12.87068 -12.83574 -12.69295 -12.30074 -12.01105 -11.68613 -11.20071 -10.32416 -9.75635 -9.55988 -8.57012 -6.73727 0.29171 0.81363 1.45556 1.51389 1.57559 1.91521 2.19158 2.24454 2.83328 3.16038 3.39659 3.61650 3.66507 4.00875 4.13165 4.14653 4.36507 4.52698 4.82789 4.87798 4.91919 5.10819 5.33262 5.40819 5.48179 5.83132 6.09668 6.45799 6.65495 6.81779 7.92090 8.20728 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.022039 B = 0.010595 C = 0.007268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.186257 B = 2642.179755 C = 3851.442155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.209 3.791 3 N -0.508 5.508 4 C 0.248 3.752 5 C -0.400 4.400 6 H 0.115 0.885 7 C 0.024 3.976 8 N -0.725 5.725 9 Si 0.986 3.014 10 H -0.268 1.268 11 H -0.251 1.251 12 H -0.259 1.259 13 C -0.342 4.342 14 C 0.337 3.663 15 F -0.216 7.216 16 F -0.207 7.207 17 C 0.033 3.967 18 C -0.266 4.266 19 C 0.308 3.692 20 N -0.513 5.513 21 H 0.084 0.916 22 H 0.076 0.924 23 H 0.065 0.935 24 H 0.292 0.708 25 H 0.139 0.861 26 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.263 2.750 1.896 5.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 N -0.221 5.221 4 C 0.127 3.873 5 C -0.427 4.427 6 H 0.132 0.868 7 C -0.202 4.202 8 N -0.344 5.344 9 Si 0.806 3.194 10 H -0.192 1.192 11 H -0.175 1.175 12 H -0.183 1.183 13 C -0.347 4.347 14 C 0.284 3.716 15 F -0.198 7.198 16 F -0.189 7.189 17 C 0.008 3.992 18 C -0.277 4.277 19 C -0.003 4.003 20 N -0.193 5.193 21 H 0.102 0.898 22 H 0.095 0.905 23 H 0.084 0.916 24 H 0.103 0.897 25 H 0.156 0.844 26 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.832 2.194 1.802 4.010 hybrid contribution 0.828 0.039 -0.296 0.880 sum 3.660 2.232 1.507 4.544 Atomic orbital electron populations 1.20648 0.88876 1.02502 1.03102 1.21771 0.97124 0.87419 0.88275 1.68676 1.08524 1.24909 1.19958 1.18658 0.88172 0.92369 0.88128 1.20595 0.98338 0.90439 1.33373 0.86767 1.27138 0.95270 1.05090 0.92730 1.70022 1.09135 1.32589 1.22614 0.85160 0.78883 0.74830 0.80577 1.19189 1.17490 1.18279 1.20770 0.95152 0.95190 1.23633 1.20090 0.88871 0.70599 0.92080 1.92891 1.88510 1.46311 1.92083 1.92929 1.91023 1.60366 1.74555 1.20564 0.92073 0.97194 0.89411 1.16302 0.92522 0.87140 1.31698 1.25612 0.91939 0.91997 0.90712 1.81101 1.10380 1.11880 1.15893 0.89755 0.90510 0.91623 0.89698 0.84408 0.84920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.39 9.77 71.23 0.70 -2.70 15 2 C 0.21 9.11 6.83 43.16 0.29 9.41 15 3 N -0.51 -24.64 7.93 -176.25 -1.40 -26.04 15 4 C 0.25 11.74 6.46 40.17 0.26 12.00 15 5 C -0.40 -18.08 7.90 23.44 0.19 -17.89 15 6 H 0.11 4.71 5.85 -2.91 -0.02 4.69 15 7 C 0.02 1.05 5.48 85.36 0.47 1.52 15 8 N -0.72 -33.45 11.58 21.87 0.25 -33.20 15 9 Si 0.99 32.32 29.56 68.60 2.03 34.34 15 10 H -0.27 -8.42 7.11 99.48 0.71 -7.72 15 11 H -0.25 -7.84 7.11 99.48 0.71 -7.13 15 12 H -0.26 -8.43 7.11 99.48 0.71 -7.72 15 13 C -0.34 -14.32 5.75 -19.58 -0.11 -14.43 15 14 C 0.34 11.90 5.12 71.24 0.36 12.27 15 15 F -0.22 -7.50 16.26 44.97 0.73 -6.77 15 16 F -0.21 -8.03 14.57 44.97 0.66 -7.38 15 17 C 0.03 1.31 9.19 22.46 0.21 1.52 15 18 C -0.27 -11.09 5.78 -20.99 -0.12 -11.21 15 19 C 0.31 12.43 13.82 88.33 1.22 13.66 15 20 N -0.51 -21.29 18.54 19.01 0.35 -20.93 15 21 H 0.08 2.76 8.14 -2.39 -0.02 2.74 15 22 H 0.08 2.77 8.14 -2.39 -0.02 2.75 15 23 H 0.06 2.24 7.08 -2.38 -0.02 2.22 15 24 H 0.29 12.07 8.29 -92.71 -0.77 11.31 15 25 H 0.14 3.87 8.14 -2.39 -0.02 3.85 15 26 H 0.13 4.73 7.41 -2.91 -0.02 4.71 15 Total: -1.00 -53.46 248.90 7.32 -46.14 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 1.24 Total: 9.70 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 3.46 Total: 4.14 kcal Atomic # 7 Polarization: -79.38 SS G_CDS: -0.79 Total: -80.17 kcal Atomic # 9 Polarization: -15.53 SS G_CDS: 1.39 Total: -14.15 kcal Atomic # 14 Polarization: 32.32 SS G_CDS: 2.03 Total: 34.34 kcal Total: -53.46 7.32 -46.14 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238517864.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.269 kcal (2) G-P(sol) polarization free energy of solvation -53.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds