Wall clock time and date at job start Mon Mar 30 2020 05:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39711 * 120.37620 * 2 1 4 4 C 1.43198 * 121.06338 * 0.02562 * 3 2 1 5 5 N 3.49985 * 81.43559 * 0.02562 * 2 1 3 6 6 C 1.42375 * 117.87395 * 179.74768 * 3 2 1 7 7 C 1.40757 * 120.77226 * 180.27222 * 6 3 2 8 8 H 1.08000 * 119.99838 * 335.26437 * 7 6 3 9 9 C 1.40290 * 120.00176 * 155.27367 * 7 6 3 10 10 N 1.30630 * 119.99984 * 342.74503 * 9 7 6 11 11 Si 1.86798 * 119.99951 * 162.74895 * 9 7 6 12 12 H 1.48500 * 109.47319 * 94.68099 * 11 9 7 13 13 H 1.48504 * 109.46999 * 214.67656 * 11 9 7 14 14 H 1.48495 * 109.47482 * 334.67616 * 11 9 7 15 15 C 1.40895 * 118.45737 * 0.25162 * 6 3 2 16 16 N 1.31296 * 120.52099 * 0.02562 * 15 6 3 17 17 C 1.32214 * 122.38096 * 359.97438 * 16 15 6 18 18 C 1.50693 * 119.23948 * 180.02562 * 17 16 15 19 19 F 1.39903 * 109.47360 * 120.00401 * 18 17 16 20 20 F 1.39905 * 109.46928 * 240.00097 * 18 17 16 21 21 H 1.09001 * 109.47086 * 89.99954 * 1 2 3 22 22 H 1.08995 * 109.47234 * 210.00400 * 1 2 3 23 23 H 1.09004 * 109.46854 * 330.00227 * 1 2 3 24 24 H 0.96999 * 120.00329 * 180.02562 * 10 9 7 25 25 H 1.08004 * 119.74111 * 179.97438 * 15 6 3 26 26 H 1.08996 * 109.47590 * 0.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2135 1.2053 0.0000 4 6 1.5289 2.4630 0.0005 5 7 0.9858 3.4608 0.0015 6 6 3.6359 1.1432 0.0055 7 6 4.4081 2.3200 0.0116 8 1 3.9957 3.2385 -0.3791 9 6 5.7135 2.2997 0.5250 10 7 6.0988 1.3145 1.2914 11 14 6.9008 3.6816 0.1126 12 1 6.8653 4.7029 1.1901 13 1 8.2762 3.1340 -0.0050 14 1 6.5052 4.3066 -1.1750 15 6 4.2525 -0.1237 0.0053 16 7 3.5274 -1.2182 -0.0005 17 6 2.2056 -1.1918 -0.0057 18 6 1.4434 -2.4918 -0.0116 19 9 0.6339 -2.5631 1.1273 20 9 0.6432 -2.5581 -1.1573 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3633 0.8900 0.5138 24 1 7.0012 1.3007 1.6467 25 1 5.3302 -0.1950 0.0090 26 1 2.1461 -3.3251 -0.0101 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238518341.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:45 Heat of formation + Delta-G solvation = -64.857078 kcal Electronic energy + Delta-G solvation = -16248.815339 eV Core-core repulsion = 13155.339441 eV Total energy + Delta-G solvation = -3093.475898 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.43191 -46.36600 -38.99520 -35.58174 -34.76730 -32.52258 -31.40683 -27.79469 -26.72445 -24.19137 -22.83851 -20.97731 -18.11841 -17.66180 -17.01735 -16.61571 -15.86164 -15.13995 -14.83111 -13.93604 -13.85393 -13.25061 -13.12522 -12.78513 -12.70657 -12.26829 -12.18135 -11.99634 -11.94809 -11.79108 -11.72214 -11.45737 -11.33026 -11.08317 -10.62036 -10.09177 -9.81858 -8.59628 -8.38130 -7.96972 -7.45705 -5.06519 1.94137 2.15657 2.79262 2.81332 2.88526 3.52005 3.68123 3.98647 4.18290 4.36662 4.89435 5.03067 5.11860 5.52862 5.59958 5.74112 5.79743 6.13594 6.21290 6.38231 6.48391 6.58837 6.75413 6.97997 7.17230 7.49593 7.76899 8.08553 8.13256 8.56404 9.17500 9.47077 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.031238 B = 0.008168 C = 0.006859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.119208 B = 3427.317147 C = 4081.490319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.002 3.998 3 C -0.160 4.160 4 C 0.302 3.698 5 N -0.490 5.490 6 C 0.105 3.895 7 C -0.405 4.405 8 H 0.093 0.907 9 C 0.073 3.927 10 N -0.750 5.750 11 Si 0.923 3.077 12 H -0.263 1.263 13 H -0.266 1.266 14 H -0.253 1.253 15 C 0.071 3.929 16 N -0.440 5.440 17 C -0.117 4.117 18 C 0.339 3.661 19 F -0.208 7.208 20 F -0.209 7.209 21 H 0.071 0.929 22 H 0.076 0.924 23 H 0.060 0.940 24 H 0.298 0.702 25 H 0.163 0.837 26 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.235 -3.931 -1.291 4.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.003 4.003 3 C -0.170 4.170 4 C -0.009 4.009 5 N -0.169 5.169 6 C 0.097 3.903 7 C -0.433 4.433 8 H 0.111 0.889 9 C -0.152 4.152 10 N -0.372 5.372 11 Si 0.745 3.255 12 H -0.187 1.187 13 H -0.190 1.190 14 H -0.176 1.176 15 C -0.102 4.102 16 N -0.148 5.148 17 C -0.245 4.245 18 C 0.284 3.716 19 F -0.190 7.190 20 F -0.191 7.191 21 H 0.090 0.910 22 H 0.095 0.905 23 H 0.079 0.921 24 H 0.110 0.890 25 H 0.180 0.820 26 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.175 -3.374 -1.133 3.563 hybrid contribution 0.312 1.034 0.009 1.080 sum 0.137 -2.340 -1.124 2.599 Atomic orbital electron populations 1.20995 0.92001 1.03042 1.02365 1.20017 0.95139 0.92214 0.92910 1.15897 0.92230 0.85426 1.23461 1.25435 0.91487 0.92350 0.91594 1.81045 1.10795 1.11255 1.13824 1.18451 0.89373 0.95181 0.87277 1.19883 0.96563 0.96639 1.30206 0.88946 1.26258 0.98982 0.97879 0.92122 1.69639 1.20311 1.29181 1.18022 0.86010 0.78560 0.80103 0.80869 1.18745 1.19047 1.17635 1.22979 0.99361 0.85769 1.02099 1.66559 1.05734 1.33951 1.08529 1.19927 0.90914 0.91623 1.22022 1.19783 0.83377 0.98108 0.70313 1.92900 1.76354 1.97379 1.52349 1.92942 1.76890 1.97586 1.51662 0.91020 0.90510 0.92135 0.89006 0.81983 0.86874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 8.59 36.01 0.31 -2.03 15 2 C 0.00 0.04 5.88 -104.10 -0.61 -0.57 15 3 C -0.16 -3.69 5.83 -105.83 -0.62 -4.31 15 4 C 0.30 6.94 12.84 -22.47 -0.29 6.66 15 5 N -0.49 -11.42 18.54 41.84 0.78 -10.65 15 6 C 0.11 2.48 5.61 -106.35 -0.60 1.89 15 7 C -0.40 -9.30 8.55 -37.86 -0.32 -9.63 15 8 H 0.09 2.13 7.35 -52.49 -0.39 1.75 15 9 C 0.07 1.53 5.16 -17.29 -0.09 1.44 15 10 N -0.75 -15.98 10.96 55.57 0.61 -15.38 15 11 Si 0.92 15.81 29.60 -169.99 -5.03 10.78 15 12 H -0.26 -4.55 7.11 56.52 0.40 -4.15 15 13 H -0.27 -4.35 7.11 56.52 0.40 -3.95 15 14 H -0.25 -4.40 7.11 56.52 0.40 -4.00 15 15 C 0.07 1.64 9.89 -16.78 -0.17 1.47 15 16 N -0.44 -9.84 10.18 -8.86 -0.09 -9.93 15 17 C -0.12 -2.48 6.28 -82.46 -0.52 -3.00 15 18 C 0.34 6.05 5.04 36.00 0.18 6.23 15 19 F -0.21 -3.74 15.28 2.25 0.03 -3.71 15 20 F -0.21 -3.71 16.43 2.25 0.04 -3.68 15 21 H 0.07 1.24 8.14 -51.93 -0.42 0.82 15 22 H 0.08 1.35 5.48 -51.93 -0.28 1.06 15 23 H 0.06 1.11 7.17 -51.93 -0.37 0.74 15 24 H 0.30 5.60 8.29 -40.82 -0.34 5.26 15 25 H 0.16 3.66 6.18 -52.48 -0.32 3.33 15 26 H 0.11 1.76 8.10 -51.93 -0.42 1.34 15 LS Contribution 246.69 15.07 3.72 3.72 Total: -1.00 -24.49 246.69 -4.01 -28.50 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -1.34 Total: 2.19 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -2.72 Total: -1.85 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 1.29 Total: -35.96 kcal Atomic # 9 Polarization: -7.45 SS G_CDS: 0.07 Total: -7.38 kcal Atomic # 14 Polarization: 15.81 SS G_CDS: -5.03 Total: 10.78 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -24.49 -4.01 -28.50 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238518341.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.359 kcal (2) G-P(sol) polarization free energy of solvation -24.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds