Wall clock time and date at job start Mon Mar 30 2020 05:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39711 * 120.37620 * 2 1 4 4 C 1.43198 * 121.06338 * 0.02562 * 3 2 1 5 5 N 3.49985 * 81.43559 * 0.02562 * 2 1 3 6 6 C 1.42375 * 117.87395 * 179.74768 * 3 2 1 7 7 C 1.40757 * 120.77226 * 180.27222 * 6 3 2 8 8 H 1.08000 * 119.99838 * 335.26437 * 7 6 3 9 9 C 1.40290 * 120.00176 * 155.27367 * 7 6 3 10 10 N 1.30630 * 119.99984 * 342.74503 * 9 7 6 11 11 Si 1.86798 * 119.99951 * 162.74895 * 9 7 6 12 12 H 1.48500 * 109.47319 * 94.68099 * 11 9 7 13 13 H 1.48504 * 109.46999 * 214.67656 * 11 9 7 14 14 H 1.48495 * 109.47482 * 334.67616 * 11 9 7 15 15 C 1.40895 * 118.45737 * 0.25162 * 6 3 2 16 16 N 1.31296 * 120.52099 * 0.02562 * 15 6 3 17 17 C 1.32214 * 122.38096 * 359.97438 * 16 15 6 18 18 C 1.50693 * 119.23948 * 180.02562 * 17 16 15 19 19 F 1.39903 * 109.47360 * 120.00401 * 18 17 16 20 20 F 1.39905 * 109.46928 * 240.00097 * 18 17 16 21 21 H 1.09001 * 109.47086 * 89.99954 * 1 2 3 22 22 H 1.08995 * 109.47234 * 210.00400 * 1 2 3 23 23 H 1.09004 * 109.46854 * 330.00227 * 1 2 3 24 24 H 0.96999 * 120.00329 * 180.02562 * 10 9 7 25 25 H 1.08004 * 119.74111 * 179.97438 * 15 6 3 26 26 H 1.08996 * 109.47590 * 0.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2135 1.2053 0.0000 4 6 1.5289 2.4630 0.0005 5 7 0.9858 3.4608 0.0015 6 6 3.6359 1.1432 0.0055 7 6 4.4081 2.3200 0.0116 8 1 3.9957 3.2385 -0.3791 9 6 5.7135 2.2997 0.5250 10 7 6.0988 1.3145 1.2914 11 14 6.9008 3.6816 0.1126 12 1 6.8653 4.7029 1.1901 13 1 8.2762 3.1340 -0.0050 14 1 6.5052 4.3066 -1.1750 15 6 4.2525 -0.1237 0.0053 16 7 3.5274 -1.2182 -0.0005 17 6 2.2056 -1.1918 -0.0057 18 6 1.4434 -2.4918 -0.0116 19 9 0.6339 -2.5631 1.1273 20 9 0.6432 -2.5581 -1.1573 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3633 0.8900 0.5138 24 1 7.0012 1.3007 1.6467 25 1 5.3302 -0.1950 0.0090 26 1 2.1461 -3.3251 -0.0101 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238518341.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:45 Heat of formation + Delta-G solvation = -77.179385 kcal Electronic energy + Delta-G solvation = -16249.349674 eV Core-core repulsion = 13155.339441 eV Total energy + Delta-G solvation = -3094.010234 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.85776 -47.78606 -40.69869 -37.39109 -36.42451 -34.20099 -33.09034 -29.38612 -28.36680 -25.80028 -24.51953 -22.63975 -19.77631 -19.33748 -18.53456 -18.04387 -17.41804 -16.75222 -16.46197 -15.50668 -15.41101 -14.91208 -14.69713 -14.24604 -14.20271 -13.90653 -13.82294 -13.74237 -13.58385 -13.37517 -13.31331 -13.02218 -12.87609 -12.64566 -12.01874 -11.65558 -11.39199 -10.33064 -10.11713 -9.67170 -9.05998 -6.80556 0.18350 0.49299 1.37416 1.45133 1.54356 1.86224 2.10128 2.25230 2.47931 2.88213 3.28152 3.39372 3.47144 3.97246 4.06453 4.20694 4.34330 4.53520 4.66958 4.80824 4.85843 4.94106 5.06027 5.28571 5.49570 5.78119 6.01741 6.36371 6.41429 6.75114 7.43535 7.90579 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.031238 B = 0.008168 C = 0.006859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.119208 B = 3427.317147 C = 4081.490319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.004 4.004 3 C -0.183 4.183 4 C 0.307 3.693 5 N -0.503 5.503 6 C 0.085 3.915 7 C -0.425 4.425 8 H 0.083 0.917 9 C 0.044 3.956 10 N -0.768 5.768 11 Si 0.988 3.012 12 H -0.263 1.263 13 H -0.248 1.248 14 H -0.259 1.259 15 C 0.058 3.942 16 N -0.443 5.443 17 C -0.129 4.129 18 C 0.345 3.655 19 F -0.207 7.207 20 F -0.207 7.207 21 H 0.085 0.915 22 H 0.087 0.913 23 H 0.058 0.942 24 H 0.312 0.688 25 H 0.162 0.838 26 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.696 -4.254 -1.337 4.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.008 4.008 3 C -0.193 4.193 4 C -0.003 4.003 5 N -0.182 5.182 6 C 0.077 3.923 7 C -0.452 4.452 8 H 0.102 0.898 9 C -0.180 4.180 10 N -0.389 5.389 11 Si 0.807 3.193 12 H -0.187 1.187 13 H -0.172 1.172 14 H -0.183 1.183 15 C -0.114 4.114 16 N -0.150 5.150 17 C -0.257 4.257 18 C 0.291 3.709 19 F -0.189 7.189 20 F -0.188 7.188 21 H 0.103 0.897 22 H 0.106 0.894 23 H 0.077 0.923 24 H 0.124 0.876 25 H 0.179 0.821 26 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.276 -3.720 -1.172 3.910 hybrid contribution 0.159 1.100 0.050 1.113 sum 0.435 -2.619 -1.122 2.883 Atomic orbital electron populations 1.20995 0.89956 1.03472 1.03320 1.20384 0.96727 0.91833 0.91885 1.16101 0.92416 0.85981 1.24819 1.25495 0.91208 0.92307 0.91258 1.81026 1.11252 1.11383 1.14543 1.18686 0.89904 0.95755 0.87958 1.20046 0.97996 0.96199 1.31004 0.89842 1.26959 0.99515 1.00053 0.91454 1.69617 1.21455 1.30160 1.17717 0.85059 0.77104 0.77098 0.80036 1.18726 1.17151 1.18255 1.22966 0.99477 0.85894 1.03112 1.66583 1.06391 1.33668 1.08367 1.20510 0.90830 0.93202 1.21205 1.19822 0.83531 0.97239 0.70285 1.92901 1.76331 1.97279 1.52373 1.92948 1.76819 1.97485 1.51559 0.89685 0.89410 0.92284 0.87605 0.82066 0.84058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.28 8.59 71.24 0.61 -3.66 15 2 C 0.00 -0.16 5.88 -19.53 -0.11 -0.27 15 3 C -0.18 -8.48 5.83 -20.65 -0.12 -8.60 15 4 C 0.31 14.20 12.84 88.33 1.13 15.33 15 5 N -0.50 -23.42 18.54 19.00 0.35 -23.06 15 6 C 0.08 4.05 5.61 -20.98 -0.12 3.93 15 7 C -0.42 -19.71 8.55 23.39 0.20 -19.51 15 8 H 0.08 3.92 7.35 -2.91 -0.02 3.90 15 9 C 0.04 1.82 5.16 85.37 0.44 2.27 15 10 N -0.77 -32.23 10.96 21.88 0.24 -31.99 15 11 Si 0.99 31.43 29.60 68.60 2.03 33.46 15 12 H -0.26 -8.33 7.11 99.48 0.71 -7.62 15 13 H -0.25 -7.15 7.11 99.48 0.71 -6.44 15 14 H -0.26 -8.42 7.11 99.48 0.71 -7.71 15 15 C 0.06 2.70 9.89 85.42 0.85 3.54 15 16 N -0.44 -19.51 10.18 -181.95 -1.85 -21.36 15 17 C -0.13 -5.34 6.28 42.48 0.27 -5.07 15 18 C 0.35 11.57 5.04 71.23 0.36 11.93 15 19 F -0.21 -6.97 15.28 44.97 0.69 -6.29 15 20 F -0.21 -6.84 16.43 44.97 0.74 -6.10 15 21 H 0.08 2.79 8.14 -2.39 -0.02 2.77 15 22 H 0.09 2.91 5.48 -2.39 -0.01 2.89 15 23 H 0.06 2.10 7.17 -2.38 -0.02 2.08 15 24 H 0.31 11.32 8.29 -92.71 -0.77 10.55 15 25 H 0.16 7.32 6.18 -2.91 -0.02 7.31 15 26 H 0.14 4.00 8.10 -2.39 -0.02 3.98 15 Total: -1.00 -50.69 246.69 6.94 -43.74 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 1.24 Total: 11.70 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 3.51 Total: -0.11 kcal Atomic # 7 Polarization: -75.16 SS G_CDS: -1.26 Total: -76.42 kcal Atomic # 9 Polarization: -13.81 SS G_CDS: 1.43 Total: -12.39 kcal Atomic # 14 Polarization: 31.43 SS G_CDS: 2.03 Total: 33.46 kcal Total: -50.69 6.94 -43.74 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238518341.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.435 kcal (2) G-P(sol) polarization free energy of solvation -50.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds