Wall clock time and date at job start Mon Mar 30 2020 05:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31435 * 119.41508 * 2 1 4 4 C 1.33594 * 121.85334 * 179.97438 * 3 2 1 5 5 C 1.41400 * 119.76419 * 180.02562 * 4 3 2 6 6 H 1.08006 * 120.00186 * 179.97438 * 5 4 3 7 7 C 1.40050 * 120.00188 * 359.97438 * 5 4 3 8 8 N 1.30723 * 120.00040 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00323 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47124 * 59.99435 * 9 7 5 11 11 H 1.48497 * 109.47174 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46917 * 299.99994 * 9 7 5 13 13 C 1.40547 * 120.46857 * 0.02562 * 4 3 2 14 14 C 1.39468 * 118.80964 * 0.24448 * 13 4 3 15 15 C 1.43199 * 120.84617 * 179.72903 * 14 13 4 16 16 N 4.81621 * 134.91613 * 180.24231 * 2 1 3 17 17 C 1.38560 * 119.41739 * 179.97438 * 2 1 3 18 18 C 1.50701 * 120.30558 * 0.03969 * 17 2 1 19 19 F 1.39899 * 109.47425 * 293.97251 * 18 17 2 20 20 F 1.39900 * 109.46654 * 53.96844 * 18 17 2 21 21 H 1.09004 * 109.46823 * 95.46441 * 1 2 3 22 22 H 1.08997 * 109.47233 * 215.46232 * 1 2 3 23 23 H 1.09004 * 109.47496 * 335.46552 * 1 2 3 24 24 H 0.97004 * 120.00616 * 179.97438 * 8 7 5 25 25 H 1.07999 * 120.59537 * 179.97438 * 13 4 3 26 26 H 1.08998 * 109.47132 * 173.96468 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1525 1.1449 0.0000 4 6 3.4872 1.2017 0.0005 5 6 4.1363 2.4580 0.0010 6 1 5.2152 2.5084 0.0019 7 6 3.3803 3.6369 0.0005 8 7 2.0744 3.5759 -0.0010 9 14 4.2377 5.2965 0.0019 10 1 5.0884 5.4151 -1.2095 11 1 3.2211 6.3789 0.0004 12 1 5.0855 5.4145 1.2154 13 6 4.2507 0.0218 0.0005 14 6 3.5899 -1.2064 -0.0052 15 6 4.3247 -2.4355 -0.0113 16 7 4.9075 -3.4105 -0.0144 17 6 2.1875 -1.2069 0.0005 18 6 1.4277 -2.5084 0.0002 19 9 0.7290 -2.6409 1.2050 20 9 0.5232 -2.5200 -1.0670 21 1 -0.3633 -0.0979 -1.0231 22 1 -0.3633 -0.8370 0.5962 23 1 -0.3634 0.9349 0.4267 24 1 1.5507 4.3924 -0.0010 25 1 5.3299 0.0653 0.0005 26 1 2.1271 -3.3374 -0.1073 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238518452.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:20 Heat of formation + Delta-G solvation = -63.034102 kcal Electronic energy + Delta-G solvation = -16259.493828 eV Core-core repulsion = 13166.096980 eV Total energy + Delta-G solvation = -3093.396848 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.87682 -47.81470 -40.55775 -37.82461 -35.87111 -33.71262 -33.21031 -29.18473 -28.86849 -25.67481 -24.53286 -22.37497 -20.17297 -18.94694 -18.08309 -18.04603 -17.53154 -17.00694 -16.32450 -15.39064 -15.20474 -14.81862 -14.77801 -14.34624 -14.29476 -14.22654 -14.01753 -13.67298 -13.40478 -13.23549 -12.98763 -12.64370 -12.62234 -12.60814 -11.97502 -11.69431 -11.23609 -10.28302 -9.71690 -9.67776 -8.43371 -6.70173 0.04371 0.63075 1.44227 1.47853 1.54717 1.59050 2.13101 2.21435 2.71765 2.78745 2.93603 3.45192 3.64861 3.81559 3.92772 4.26033 4.43960 4.64198 4.89567 4.90632 4.93901 5.13994 5.18175 5.27221 5.46329 5.78288 6.12398 6.28405 6.51337 6.73133 7.99289 8.29975 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.030867 B = 0.008054 C = 0.006659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.913792 B = 3475.518057 C = 4203.978214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.188 3.812 3 N -0.505 5.505 4 C 0.227 3.773 5 C -0.423 4.423 6 H 0.107 0.893 7 C 0.023 3.977 8 N -0.729 5.729 9 Si 0.990 3.010 10 H -0.257 1.257 11 H -0.270 1.270 12 H -0.257 1.257 13 C -0.220 4.220 14 C 0.058 3.942 15 C 0.281 3.719 16 N -0.443 5.443 17 C -0.351 4.351 18 C 0.340 3.660 19 F -0.209 7.209 20 F -0.206 7.206 21 H 0.079 0.921 22 H 0.075 0.925 23 H 0.068 0.932 24 H 0.287 0.713 25 H 0.134 0.866 26 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.805 -0.917 -0.182 1.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.040 3.960 3 N -0.219 5.219 4 C 0.104 3.896 5 C -0.453 4.453 6 H 0.125 0.875 7 C -0.203 4.203 8 N -0.349 5.349 9 Si 0.810 3.190 10 H -0.181 1.181 11 H -0.195 1.195 12 H -0.181 1.181 13 C -0.246 4.246 14 C 0.049 3.951 15 C -0.033 4.033 16 N -0.119 5.119 17 C -0.359 4.359 18 C 0.286 3.714 19 F -0.191 7.191 20 F -0.187 7.187 21 H 0.097 0.903 22 H 0.094 0.906 23 H 0.087 0.913 24 H 0.098 0.902 25 H 0.152 0.848 26 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.576 -1.506 -0.184 1.623 hybrid contribution 0.377 0.185 0.010 0.420 sum -0.198 -1.322 -0.173 1.348 Atomic orbital electron populations 1.20725 0.88978 1.02861 1.02783 1.21344 0.97328 0.87701 0.89658 1.68617 1.09243 1.25166 1.18889 1.18975 0.88253 0.93086 0.89310 1.20294 0.95884 0.89631 1.39443 0.87465 1.27061 0.95381 1.05127 0.92699 1.70163 1.07445 1.31803 1.25483 0.85110 0.78710 0.74871 0.80298 1.18095 1.19461 1.18104 1.22042 1.00283 0.90818 1.11416 1.15614 0.90669 0.86845 1.01953 1.25765 0.92447 0.92422 0.92665 1.81165 1.09464 1.11348 1.09949 1.20322 0.92400 0.95280 1.27922 1.19832 0.83721 0.96886 0.70952 1.92932 1.81830 1.96946 1.47346 1.92945 1.70987 1.97724 1.57089 0.90260 0.90628 0.91252 0.90161 0.84782 0.87489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.64 8.79 71.23 0.63 -3.02 15 2 C 0.19 8.36 6.75 42.69 0.29 8.65 15 3 N -0.51 -25.21 7.74 -177.46 -1.37 -26.59 15 4 C 0.23 10.99 6.55 40.22 0.26 11.25 15 5 C -0.42 -19.62 9.14 23.49 0.21 -19.41 15 6 H 0.11 4.45 7.85 -2.91 -0.02 4.43 15 7 C 0.02 1.00 5.50 85.30 0.47 1.47 15 8 N -0.73 -34.61 11.46 21.84 0.25 -34.36 15 9 Si 0.99 32.84 29.56 68.60 2.03 34.87 15 10 H -0.26 -8.25 7.11 99.48 0.71 -7.55 15 11 H -0.27 -8.68 7.11 99.48 0.71 -7.98 15 12 H -0.26 -8.26 7.11 99.48 0.71 -7.56 15 13 C -0.22 -9.35 9.58 23.13 0.22 -9.13 15 14 C 0.06 2.33 5.75 -21.25 -0.12 2.20 15 15 C 0.28 10.35 13.71 88.33 1.21 11.56 15 16 N -0.44 -16.33 18.54 19.00 0.35 -15.98 15 17 C -0.35 -14.34 5.45 -19.30 -0.11 -14.45 15 18 C 0.34 11.99 4.81 71.24 0.34 12.34 15 19 F -0.21 -7.45 15.83 44.97 0.71 -6.74 15 20 F -0.21 -7.23 15.96 44.97 0.72 -6.51 15 21 H 0.08 2.81 8.05 -2.38 -0.02 2.79 15 22 H 0.08 2.64 5.99 -2.39 -0.01 2.63 15 23 H 0.07 2.66 8.14 -2.39 -0.02 2.64 15 24 H 0.29 12.28 8.29 -92.71 -0.77 11.51 15 25 H 0.13 5.07 8.06 -2.91 -0.02 5.05 15 26 H 0.11 3.41 6.57 -2.39 -0.02 3.40 15 Total: -1.00 -51.81 249.39 7.33 -44.47 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 1.24 Total: 9.37 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 3.41 Total: 1.46 kcal Atomic # 7 Polarization: -76.16 SS G_CDS: -0.77 Total: -76.93 kcal Atomic # 9 Polarization: -14.68 SS G_CDS: 1.43 Total: -13.25 kcal Atomic # 14 Polarization: 32.84 SS G_CDS: 2.03 Total: 34.87 kcal Total: -51.81 7.33 -44.47 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238518452.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.560 kcal (2) G-P(sol) polarization free energy of solvation -51.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds