Wall clock time and date at job start Mon Mar 30 2020 05:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31144 * 119.66404 * 2 1 4 4 C 1.33795 * 121.54344 * 179.97438 * 3 2 1 5 5 C 1.41025 * 119.65893 * 180.02562 * 4 3 2 6 6 H 1.08002 * 119.99931 * 180.02562 * 5 4 3 7 7 C 1.40249 * 119.99993 * 359.97438 * 5 4 3 8 8 N 1.30621 * 119.99954 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00108 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46804 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46929 * 120.00120 * 9 7 5 12 12 H 1.48502 * 109.47313 * 240.00214 * 9 7 5 13 13 C 1.40853 * 120.68282 * 0.02562 * 4 3 2 14 14 C 1.36719 * 119.26792 * 359.97438 * 13 4 3 15 15 C 1.50702 * 120.71092 * 179.97438 * 14 13 4 16 16 F 1.39895 * 109.47341 * 30.02100 * 15 14 13 17 17 F 1.39895 * 109.46812 * 150.02390 * 15 14 13 18 18 C 1.40275 * 119.66701 * 179.97438 * 2 1 3 19 19 C 1.43197 * 120.36739 * 0.02562 * 18 2 1 20 20 N 3.49355 * 80.30507 * 179.97438 * 2 1 3 21 21 H 1.08999 * 109.46995 * 90.00138 * 1 2 3 22 22 H 1.09000 * 109.46940 * 210.00057 * 1 2 3 23 23 H 1.08997 * 109.47043 * 330.00027 * 1 2 3 24 24 H 0.96997 * 119.99916 * 179.97438 * 8 7 5 25 25 H 1.07997 * 120.36588 * 180.02562 * 13 4 3 26 26 H 1.09000 * 109.46818 * 270.01988 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1561 1.1396 0.0000 4 6 3.4933 1.1834 0.0005 5 6 4.1506 2.4312 0.0010 6 1 5.2298 2.4730 0.0010 7 6 3.4028 3.6177 0.0005 8 7 2.0975 3.5670 0.0000 9 14 4.2734 5.2704 0.0019 10 1 5.7428 5.0558 0.0029 11 1 3.8861 6.0349 -1.2109 12 1 3.8834 6.0344 1.2142 13 6 4.2514 -0.0037 0.0005 14 6 3.6059 -1.2089 0.0005 15 6 4.3848 -2.4991 0.0000 16 9 5.6037 -2.3083 0.6594 17 9 3.6479 -3.4888 0.6591 18 6 2.2013 -1.2189 0.0005 19 6 1.4861 -2.4594 0.0005 20 7 0.9187 -3.4437 0.0015 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.5804 4.3877 0.0000 25 1 5.3306 0.0377 0.0014 26 1 4.5725 -2.8097 -1.0278 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238518551.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:11 Heat of formation + Delta-G solvation = -51.880032 kcal Electronic energy + Delta-G solvation = -16215.148912 eV Core-core repulsion = 13122.235741 eV Total energy + Delta-G solvation = -3092.913171 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.54737 -46.56602 -38.87111 -35.58676 -34.10823 -32.60438 -31.21502 -27.56515 -26.43626 -25.75029 -21.96676 -20.47512 -18.00536 -17.83790 -17.04604 -16.82239 -15.86538 -15.23870 -14.82164 -13.69731 -13.55275 -13.37412 -13.21379 -12.91305 -12.55829 -12.39658 -12.23467 -11.81040 -11.75527 -11.66596 -11.47732 -11.22487 -11.13023 -10.89739 -10.59116 -10.29817 -9.67220 -8.64639 -8.05082 -7.89324 -6.86905 -5.00512 1.89384 2.45133 2.85828 2.88282 2.92991 3.63150 3.70834 3.96410 4.21643 4.48782 4.67250 5.11421 5.21223 5.24926 5.50668 5.52911 5.97226 6.31960 6.34916 6.48412 6.50651 6.70639 6.89312 6.97220 7.17050 7.44593 7.76775 8.12685 8.39711 8.58450 9.64904 9.82474 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.030163 B = 0.008257 C = 0.006550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.054733 B = 3390.263350 C = 4273.976767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.218 3.782 3 N -0.479 5.479 4 C 0.252 3.748 5 C -0.381 4.381 6 H 0.097 0.903 7 C 0.059 3.941 8 N -0.683 5.683 9 Si 0.916 3.084 10 H -0.256 1.256 11 H -0.269 1.269 12 H -0.269 1.269 13 C -0.228 4.228 14 C -0.059 4.059 15 C 0.309 3.691 16 F -0.202 7.202 17 F -0.199 7.199 18 C -0.241 4.241 19 C 0.291 3.709 20 N -0.495 5.495 21 H 0.069 0.931 22 H 0.057 0.943 23 H 0.077 0.923 24 H 0.282 0.718 25 H 0.118 0.882 26 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.959 0.638 -1.359 3.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.065 3.935 3 N -0.192 5.192 4 C 0.130 3.870 5 C -0.410 4.410 6 H 0.115 0.885 7 C -0.171 4.171 8 N -0.301 5.301 9 Si 0.739 3.261 10 H -0.179 1.179 11 H -0.194 1.194 12 H -0.193 1.193 13 C -0.251 4.251 14 C -0.067 4.067 15 C 0.255 3.745 16 F -0.183 7.183 17 F -0.180 7.180 18 C -0.251 4.251 19 C -0.019 4.019 20 N -0.175 5.175 21 H 0.087 0.913 22 H 0.076 0.924 23 H 0.096 0.904 24 H 0.094 0.906 25 H 0.136 0.864 26 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.513 0.063 -1.322 2.010 hybrid contribution 1.144 0.221 0.115 1.170 sum 2.656 0.285 -1.208 2.932 Atomic orbital electron populations 1.20625 0.90745 1.02171 1.02085 1.21228 0.95677 0.87190 0.89455 1.68698 1.08246 1.23599 1.18660 1.18626 0.88008 0.91957 0.88405 1.20036 0.95178 0.89209 1.36579 0.88544 1.26291 0.94992 1.02031 0.93789 1.70054 1.06329 1.30323 1.23442 0.86096 0.80861 0.80052 0.79062 1.17908 1.19358 1.19343 1.21263 0.99782 0.91797 1.12296 1.19814 0.92575 0.93461 1.00837 1.20373 0.76205 0.85638 0.92272 1.92957 1.45707 1.95658 1.83988 1.92988 1.77359 1.63739 1.83950 1.15869 0.90650 0.87749 1.30875 1.25630 0.92419 0.92234 0.91647 1.81047 1.10567 1.11175 1.14672 0.91264 0.92432 0.90417 0.90599 0.86395 0.86850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.85 9.77 36.01 0.35 -1.50 15 2 C 0.22 4.85 6.83 -82.12 -0.56 4.29 15 3 N -0.48 -11.63 7.74 -7.06 -0.05 -11.68 15 4 C 0.25 6.00 6.55 -84.97 -0.56 5.44 15 5 C -0.38 -8.65 9.13 -37.77 -0.34 -9.00 15 6 H 0.10 2.00 7.85 -52.49 -0.41 1.58 15 7 C 0.06 1.27 5.50 -17.31 -0.10 1.17 15 8 N -0.68 -15.61 11.44 55.56 0.64 -14.98 15 9 Si 0.92 15.82 29.56 -169.99 -5.03 10.80 15 10 H -0.26 -4.33 7.11 56.52 0.40 -3.93 15 11 H -0.27 -4.61 7.11 56.52 0.40 -4.21 15 12 H -0.27 -4.63 7.11 56.52 0.40 -4.23 15 13 C -0.23 -4.90 9.13 -39.14 -0.36 -5.26 15 14 C -0.06 -1.23 5.76 -104.33 -0.60 -1.83 15 15 C 0.31 5.53 5.49 36.01 0.20 5.73 15 16 F -0.20 -3.62 16.54 2.25 0.04 -3.58 15 17 F -0.20 -3.96 14.70 2.25 0.03 -3.93 15 18 C -0.24 -5.23 5.76 -106.37 -0.61 -5.84 15 19 C 0.29 6.27 11.15 -22.47 -0.25 6.02 15 20 N -0.50 -10.96 18.44 41.84 0.77 -10.18 15 21 H 0.07 1.20 8.14 -51.93 -0.42 0.77 15 22 H 0.06 1.03 7.08 -51.93 -0.37 0.66 15 23 H 0.08 1.42 8.14 -51.93 -0.42 1.00 15 24 H 0.28 5.75 8.29 -40.82 -0.34 5.41 15 25 H 0.12 2.31 7.65 -52.49 -0.40 1.90 15 26 H 0.11 1.65 8.14 -51.93 -0.42 1.22 15 LS Contribution 250.10 15.07 3.77 3.77 Total: -1.00 -26.12 250.10 -4.24 -30.36 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: -1.58 Total: 0.20 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -2.83 Total: -0.77 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 1.35 Total: -36.84 kcal Atomic # 9 Polarization: -7.58 SS G_CDS: 0.07 Total: -7.51 kcal Atomic # 14 Polarization: 15.82 SS G_CDS: -5.03 Total: 10.80 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -26.12 -4.24 -30.36 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238518551.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.518 kcal (2) G-P(sol) polarization free energy of solvation -26.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds