Wall clock time and date at job start Mon Mar 30 2020 05:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31144 * 119.66404 * 2 1 4 4 C 1.33795 * 121.54344 * 179.97438 * 3 2 1 5 5 C 1.41025 * 119.65893 * 180.02562 * 4 3 2 6 6 H 1.08002 * 119.99931 * 180.02562 * 5 4 3 7 7 C 1.40249 * 119.99993 * 359.97438 * 5 4 3 8 8 N 1.30621 * 119.99954 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00108 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46804 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46929 * 120.00120 * 9 7 5 12 12 H 1.48502 * 109.47313 * 240.00214 * 9 7 5 13 13 C 1.40853 * 120.68282 * 0.02562 * 4 3 2 14 14 C 1.36719 * 119.26792 * 359.97438 * 13 4 3 15 15 C 1.50702 * 120.71092 * 179.97438 * 14 13 4 16 16 F 1.39895 * 109.47341 * 30.02100 * 15 14 13 17 17 F 1.39895 * 109.46812 * 150.02390 * 15 14 13 18 18 C 1.40275 * 119.66701 * 179.97438 * 2 1 3 19 19 C 1.43197 * 120.36739 * 0.02562 * 18 2 1 20 20 N 3.49355 * 80.30507 * 179.97438 * 2 1 3 21 21 H 1.08999 * 109.46995 * 90.00138 * 1 2 3 22 22 H 1.09000 * 109.46940 * 210.00057 * 1 2 3 23 23 H 1.08997 * 109.47043 * 330.00027 * 1 2 3 24 24 H 0.96997 * 119.99916 * 179.97438 * 8 7 5 25 25 H 1.07997 * 120.36588 * 180.02562 * 13 4 3 26 26 H 1.09000 * 109.46818 * 270.01988 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1561 1.1396 0.0000 4 6 3.4933 1.1834 0.0005 5 6 4.1506 2.4312 0.0010 6 1 5.2298 2.4730 0.0010 7 6 3.4028 3.6177 0.0005 8 7 2.0975 3.5670 0.0000 9 14 4.2734 5.2704 0.0019 10 1 5.7428 5.0558 0.0029 11 1 3.8861 6.0349 -1.2109 12 1 3.8834 6.0344 1.2142 13 6 4.2514 -0.0037 0.0005 14 6 3.6059 -1.2089 0.0005 15 6 4.3848 -2.4991 0.0000 16 9 5.6037 -2.3083 0.6594 17 9 3.6479 -3.4888 0.6591 18 6 2.2013 -1.2189 0.0005 19 6 1.4861 -2.4594 0.0005 20 7 0.9187 -3.4437 0.0015 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.5804 4.3877 0.0000 25 1 5.3306 0.0377 0.0014 26 1 4.5725 -2.8097 -1.0278 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238518551.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:11 Heat of formation + Delta-G solvation = -65.415005 kcal Electronic energy + Delta-G solvation = -16215.735833 eV Core-core repulsion = 13122.235741 eV Total energy + Delta-G solvation = -3093.500092 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.00994 -48.03270 -40.54793 -37.30511 -35.76806 -34.22727 -32.89129 -29.21706 -28.04994 -27.30620 -23.63064 -22.08204 -19.66057 -19.49842 -18.46952 -18.33610 -17.45487 -16.75684 -16.47760 -15.32485 -15.07361 -14.89159 -14.80116 -14.46908 -14.09058 -13.98347 -13.89687 -13.38035 -13.35293 -13.21776 -13.03515 -12.77893 -12.70028 -12.39546 -12.12740 -11.78800 -11.24965 -10.32551 -9.74946 -9.59899 -8.49958 -6.73082 0.20699 0.79755 1.46893 1.49445 1.62546 1.99503 2.19180 2.29034 2.75760 2.85625 3.21548 3.49631 3.63474 3.67433 3.92412 4.02626 4.41849 4.70362 4.83344 4.90259 4.91658 5.10355 5.25983 5.32964 5.51895 5.78909 6.08747 6.45842 6.68718 6.87283 7.95902 8.22406 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.030163 B = 0.008257 C = 0.006550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.054733 B = 3390.263350 C = 4273.976767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.204 3.796 3 N -0.507 5.507 4 C 0.222 3.778 5 C -0.401 4.401 6 H 0.110 0.890 7 C 0.020 3.980 8 N -0.718 5.718 9 Si 0.992 3.008 10 H -0.248 1.248 11 H -0.265 1.265 12 H -0.267 1.267 13 C -0.234 4.234 14 C -0.063 4.063 15 C 0.311 3.689 16 F -0.201 7.201 17 F -0.210 7.210 18 C -0.252 4.252 19 C 0.302 3.698 20 N -0.506 5.506 21 H 0.083 0.917 22 H 0.063 0.937 23 H 0.077 0.923 24 H 0.291 0.709 25 H 0.134 0.866 26 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.829 1.086 -1.665 4.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 N -0.221 5.221 4 C 0.100 3.900 5 C -0.429 4.429 6 H 0.128 0.872 7 C -0.207 4.207 8 N -0.337 5.337 9 Si 0.812 3.188 10 H -0.171 1.171 11 H -0.190 1.190 12 H -0.192 1.192 13 C -0.257 4.257 14 C -0.070 4.070 15 C 0.258 3.742 16 F -0.182 7.182 17 F -0.192 7.192 18 C -0.263 4.263 19 C -0.008 4.008 20 N -0.186 5.186 21 H 0.101 0.899 22 H 0.082 0.918 23 H 0.096 0.904 24 H 0.102 0.898 25 H 0.152 0.848 26 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.381 0.484 -1.628 2.925 hybrid contribution 0.857 0.074 0.219 0.888 sum 3.239 0.558 -1.409 3.576 Atomic orbital electron populations 1.20617 0.88834 1.02410 1.03040 1.21717 0.97128 0.87092 0.88933 1.68708 1.08827 1.24568 1.19981 1.19096 0.88453 0.93341 0.89140 1.20481 0.96121 0.89702 1.36634 0.87167 1.27176 0.95468 1.05271 0.92764 1.70115 1.07873 1.31839 1.23855 0.84974 0.79858 0.75095 0.78900 1.17097 1.19009 1.19220 1.21377 1.00467 0.91468 1.12399 1.20115 0.92542 0.94694 0.99662 1.20620 0.75543 0.84062 0.93981 1.92958 1.45447 1.95595 1.84233 1.92966 1.77785 1.64000 1.84425 1.15989 0.91314 0.87617 1.31379 1.25529 0.92077 0.91972 0.91261 1.81052 1.10908 1.11454 1.15185 0.89874 0.91802 0.90422 0.89813 0.84831 0.82678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.40 9.77 71.24 0.70 -2.70 15 2 C 0.20 9.08 6.83 43.16 0.29 9.37 15 3 N -0.51 -24.82 7.74 -176.25 -1.36 -26.19 15 4 C 0.22 10.57 6.55 40.17 0.26 10.83 15 5 C -0.40 -18.06 9.13 23.44 0.21 -17.84 15 6 H 0.11 4.46 7.85 -2.91 -0.02 4.44 15 7 C 0.02 0.85 5.50 85.36 0.47 1.32 15 8 N -0.72 -32.86 11.44 21.87 0.25 -32.61 15 9 Si 0.99 31.49 29.56 68.60 2.03 33.51 15 10 H -0.25 -7.48 7.11 99.48 0.71 -6.77 15 11 H -0.27 -8.22 7.11 99.48 0.71 -7.51 15 12 H -0.27 -8.37 7.11 99.48 0.71 -7.67 15 13 C -0.23 -9.91 9.13 22.55 0.21 -9.70 15 14 C -0.06 -2.53 5.76 -19.68 -0.11 -2.65 15 15 C 0.31 10.51 5.49 71.24 0.39 10.90 15 16 F -0.20 -6.80 16.54 44.97 0.74 -6.06 15 17 F -0.21 -8.02 14.70 44.97 0.66 -7.35 15 18 C -0.25 -10.80 5.76 -21.00 -0.12 -10.92 15 19 C 0.30 12.68 11.15 88.33 0.98 13.67 15 20 N -0.51 -21.79 18.44 19.00 0.35 -21.44 15 21 H 0.08 2.82 8.14 -2.39 -0.02 2.80 15 22 H 0.06 2.25 7.08 -2.39 -0.02 2.23 15 23 H 0.08 2.84 8.14 -2.39 -0.02 2.83 15 24 H 0.29 11.81 8.29 -92.71 -0.77 11.04 15 25 H 0.13 5.07 7.65 -2.91 -0.02 5.04 15 26 H 0.16 4.01 8.14 -2.39 -0.02 3.99 15 Total: -1.00 -54.64 250.10 7.19 -47.45 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 1.23 Total: 10.42 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 3.28 Total: 2.27 kcal Atomic # 7 Polarization: -79.48 SS G_CDS: -0.76 Total: -80.24 kcal Atomic # 9 Polarization: -14.82 SS G_CDS: 1.40 Total: -13.41 kcal Atomic # 14 Polarization: 31.49 SS G_CDS: 2.03 Total: 33.51 kcal Total: -54.64 7.19 -47.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238518551.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.960 kcal (2) G-P(sol) polarization free energy of solvation -54.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds