Wall clock time and date at job start Mon Mar 30 2020 05:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40462 * 120.71634 * 2 1 4 4 C 1.43204 * 120.36902 * 0.02562 * 3 2 1 5 5 N 3.49505 * 81.37318 * 0.02562 * 2 1 3 6 6 C 1.40280 * 119.26207 * 180.25521 * 3 2 1 7 7 N 1.31134 * 120.66643 * 359.77657 * 6 3 2 8 8 C 1.33788 * 121.54615 * 359.97438 * 7 6 3 9 9 C 1.41032 * 119.65821 * 180.02562 * 8 7 6 10 10 H 1.08006 * 119.99668 * 188.46507 * 9 8 7 11 11 C 1.40244 * 120.00257 * 8.46584 * 9 8 7 12 12 N 1.30621 * 119.99735 * 359.97438 * 11 9 8 13 13 Si 1.86790 * 120.00457 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47359 * 59.99999 * 13 11 9 15 15 H 1.48501 * 109.47636 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47474 * 300.00081 * 13 11 9 17 17 C 1.36720 * 120.70805 * 179.77965 * 2 1 3 18 18 C 1.50693 * 120.36890 * 0.02562 * 17 2 1 19 19 F 1.39906 * 109.47121 * 232.70348 * 18 17 2 20 20 F 1.39899 * 109.47432 * 112.70345 * 18 17 2 21 21 H 1.08998 * 109.47239 * 264.33323 * 1 2 3 22 22 H 1.09002 * 109.47255 * 24.33470 * 1 2 3 23 23 H 1.08999 * 109.47090 * 144.33080 * 1 2 3 24 24 H 1.07997 * 119.66223 * 179.75233 * 6 3 2 25 25 H 0.97002 * 120.00126 * 179.97438 * 12 11 9 26 26 H 1.08999 * 109.47439 * 352.70390 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2245 1.2076 0.0000 4 6 1.5321 2.4611 0.0006 5 7 0.9828 3.4555 0.0015 6 6 3.6268 1.1720 -0.0055 7 7 4.2668 0.0274 -0.0061 8 6 3.6133 -1.1400 -0.0011 9 6 4.3418 -2.3476 -0.0015 10 1 3.8279 -3.2881 -0.1353 11 6 5.7333 -2.3272 0.1718 12 7 6.3547 -1.1896 0.3330 13 14 6.6981 -3.9266 0.1720 14 1 6.5087 -4.6192 -1.1278 15 1 8.1404 -3.6348 0.3724 16 1 6.2124 -4.7976 1.2723 17 6 2.2052 -1.1755 0.0045 18 6 1.4764 -2.4944 0.0090 19 9 1.9500 -3.2854 1.0614 20 9 1.6969 -3.1533 -1.2053 21 1 -0.3633 -0.1015 1.0226 22 1 -0.3634 0.9364 -0.4235 23 1 -0.3633 -0.8349 -0.5992 24 1 4.1849 2.0966 -0.0095 25 1 7.3172 -1.1755 0.4533 26 1 0.4084 -2.3191 0.1385 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238522936.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:20 Heat of formation + Delta-G solvation = -54.075142 kcal Electronic energy + Delta-G solvation = -16455.002477 eV Core-core repulsion = 13361.994118 eV Total energy + Delta-G solvation = -3093.008358 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.11295 -46.05831 -38.90626 -35.70842 -34.22783 -33.03513 -30.94782 -27.33834 -27.07900 -24.78221 -22.06525 -20.88794 -17.94554 -17.43999 -16.96008 -16.33756 -15.58060 -15.16546 -14.76201 -14.28101 -13.66225 -12.99076 -12.85598 -12.51038 -12.47492 -12.46864 -12.37529 -11.96110 -11.91481 -11.76509 -11.36393 -11.29072 -11.15527 -11.00381 -10.47068 -10.01600 -9.62896 -8.54436 -8.04143 -7.98224 -6.89953 -5.03451 1.99942 2.40497 2.90754 2.93251 2.93992 3.57537 3.67375 3.90823 4.49517 4.61243 4.92799 5.31493 5.36056 5.44029 5.48075 5.58869 5.86174 5.90902 6.04663 6.14680 6.41348 6.66460 6.87193 7.01175 7.13747 7.47969 7.80671 8.11340 8.37826 8.49121 9.61616 9.80832 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.025882 B = 0.010048 C = 0.007589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.577581 B = 2785.830526 C = 3688.504103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.064 3.936 3 C -0.267 4.267 4 C 0.296 3.704 5 N -0.506 5.506 6 C 0.203 3.797 7 N -0.481 5.481 8 C 0.270 3.730 9 C -0.368 4.368 10 H 0.100 0.900 11 C 0.059 3.941 12 N -0.683 5.683 13 Si 0.917 3.083 14 H -0.258 1.258 15 H -0.272 1.272 16 H -0.258 1.258 17 C -0.330 4.330 18 C 0.333 3.667 19 F -0.204 7.204 20 F -0.211 7.211 21 H 0.074 0.926 22 H 0.065 0.935 23 H 0.068 0.932 24 H 0.133 0.867 25 H 0.285 0.715 26 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.877 -4.512 0.091 5.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.057 3.943 3 C -0.277 4.277 4 C -0.014 4.014 5 N -0.185 5.185 6 C 0.026 3.974 7 N -0.191 5.191 8 C 0.150 3.850 9 C -0.395 4.395 10 H 0.118 0.882 11 C -0.171 4.171 12 N -0.301 5.301 13 Si 0.740 3.260 14 H -0.182 1.182 15 H -0.197 1.197 16 H -0.182 1.182 17 C -0.336 4.336 18 C 0.279 3.721 19 F -0.185 7.185 20 F -0.192 7.192 21 H 0.093 0.907 22 H 0.084 0.916 23 H 0.086 0.914 24 H 0.150 0.850 25 H 0.097 0.903 26 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.548 -3.061 0.124 3.984 hybrid contribution -0.161 -1.000 0.017 1.013 sum -2.709 -4.061 0.141 4.884 Atomic orbital electron populations 1.20936 0.92496 1.02554 1.02304 1.19044 0.93922 0.91309 0.90071 1.16283 0.93727 0.85546 1.32169 1.25777 0.92120 0.92520 0.91002 1.81099 1.09886 1.11795 1.15762 1.22761 0.88550 0.97196 0.88918 1.68871 1.36081 0.96176 1.18013 1.18295 0.87026 0.92153 0.87512 1.20207 0.91992 0.93779 1.33532 0.88209 1.26329 0.98582 0.98566 0.93599 1.70010 1.10761 1.26950 1.22379 0.86177 0.78181 0.80981 0.80690 1.18223 1.19685 1.18192 1.20253 0.96085 0.92269 1.24979 1.19955 0.97020 0.83865 0.71303 1.92948 1.90996 1.76570 1.58032 1.92945 1.96508 1.83135 1.46615 0.90750 0.91647 0.91352 0.84959 0.90340 0.88577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 8.86 36.01 0.32 -1.63 15 2 C 0.06 1.26 5.91 -104.33 -0.62 0.64 15 3 C -0.27 -5.49 5.78 -106.37 -0.61 -6.10 15 4 C 0.30 5.97 13.86 -22.47 -0.31 5.66 15 5 N -0.51 -10.58 18.54 41.84 0.78 -9.80 15 6 C 0.20 4.40 10.93 -17.08 -0.19 4.21 15 7 N -0.48 -11.80 7.89 -10.80 -0.09 -11.88 15 8 C 0.27 6.59 6.51 -84.97 -0.55 6.04 15 9 C -0.37 -8.86 8.11 -37.77 -0.31 -9.16 15 10 H 0.10 2.33 5.56 -52.48 -0.29 2.04 15 11 C 0.06 1.35 5.49 -17.31 -0.10 1.26 15 12 N -0.68 -16.08 11.48 55.56 0.64 -15.44 15 13 Si 0.92 16.83 29.56 -169.99 -5.02 11.81 15 14 H -0.26 -4.71 7.11 56.52 0.40 -4.31 15 15 H -0.27 -4.80 7.11 56.52 0.40 -4.40 15 16 H -0.26 -4.72 7.11 56.52 0.40 -4.32 15 17 C -0.33 -7.09 5.41 -104.19 -0.56 -7.66 15 18 C 0.33 6.27 4.65 36.00 0.17 6.44 15 19 F -0.20 -4.11 15.56 2.25 0.04 -4.08 15 20 F -0.21 -4.18 16.48 2.25 0.04 -4.14 15 21 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 22 H 0.06 1.02 6.99 -51.93 -0.36 0.66 15 23 H 0.07 0.92 6.65 -51.93 -0.35 0.57 15 24 H 0.13 2.55 8.06 -52.49 -0.42 2.13 15 25 H 0.29 6.00 8.29 -40.82 -0.34 5.66 15 26 H 0.10 1.44 5.84 -51.93 -0.30 1.13 15 LS Contribution 245.87 15.07 3.71 3.71 Total: -1.00 -26.40 245.87 -3.96 -30.36 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: -1.28 Total: -0.22 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -2.76 Total: -0.31 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 1.33 Total: -37.12 kcal Atomic # 9 Polarization: -8.29 SS G_CDS: 0.07 Total: -8.22 kcal Atomic # 14 Polarization: 16.83 SS G_CDS: -5.02 Total: 11.81 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -26.40 -3.96 -30.36 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238522936.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.710 kcal (2) G-P(sol) polarization free energy of solvation -26.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds