Wall clock time and date at job start Mon Mar 30 2020 05:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39930 * 120.27508 * 2 1 4 4 C 1.43205 * 119.61597 * 0.02562 * 3 2 1 5 5 N 3.47913 * 80.35810 * 0.02562 * 2 1 3 6 6 N 1.32363 * 120.76589 * 180.02562 * 3 2 1 7 7 C 1.33370 * 121.41045 * 359.68456 * 6 3 2 8 8 C 1.41442 * 119.75736 * 180.28327 * 7 6 3 9 9 H 1.08003 * 119.99922 * 174.08611 * 8 7 6 10 10 C 1.40024 * 119.99863 * 354.08728 * 8 7 6 11 11 N 1.30735 * 120.00042 * 6.35481 * 10 8 7 12 12 Si 1.86800 * 119.99746 * 186.35066 * 10 8 7 13 13 H 1.48505 * 109.47077 * 94.98760 * 12 10 8 14 14 H 1.48501 * 109.47369 * 214.98472 * 12 10 8 15 15 H 1.48500 * 109.47415 * 334.98762 * 12 10 8 16 16 C 1.40807 * 120.48521 * 0.57919 * 7 6 3 17 17 C 1.38200 * 119.20067 * 359.45440 * 16 7 6 18 18 C 1.50703 * 120.65934 * 180.27612 * 17 16 7 19 19 F 1.39902 * 109.47309 * 119.99582 * 18 17 16 20 20 F 1.39892 * 109.47569 * 240.00326 * 18 17 16 21 21 H 1.09000 * 109.47475 * 269.97751 * 1 2 3 22 22 H 1.09002 * 109.47386 * 29.98411 * 1 2 3 23 23 H 1.09006 * 109.47071 * 149.97871 * 1 2 3 24 24 H 0.97001 * 119.99837 * 179.97438 * 11 10 8 25 25 H 1.07990 * 120.39663 * 179.73408 * 16 7 6 26 26 H 1.09002 * 109.46164 * 0.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2125 1.2085 0.0000 4 6 1.4941 2.4473 0.0006 5 7 0.9243 3.4300 0.0015 6 7 3.5361 1.2198 -0.0005 7 6 4.2409 0.0875 0.0052 8 6 5.6543 0.1405 0.0105 9 1 6.2283 -0.7688 0.1116 10 6 6.3092 1.3717 -0.1151 11 7 5.6195 2.4823 -0.1124 12 14 8.1685 1.4273 -0.2866 13 1 8.5313 1.4888 -1.7254 14 1 8.6940 2.6300 0.4082 15 1 8.7584 0.2074 0.3209 16 6 3.5883 -1.1602 -0.0002 17 6 2.2068 -1.1985 -0.0001 18 6 1.4746 -2.5157 0.0004 19 9 0.6717 -2.6025 1.1428 20 9 0.6716 -2.6033 -1.1418 21 1 -0.3634 -0.0004 1.0276 22 1 -0.3634 0.8901 -0.5136 23 1 -0.3633 -0.8898 -0.5142 24 1 6.0733 3.3352 -0.1991 25 1 4.1604 -2.0760 0.0001 26 1 2.1964 -3.3324 0.0011 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238523649.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:16 Heat of formation + Delta-G solvation = -47.721249 kcal Electronic energy + Delta-G solvation = -16181.533035 eV Core-core repulsion = 13088.800202 eV Total energy + Delta-G solvation = -3092.732833 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.61172 -46.55388 -38.97343 -35.77800 -34.24084 -32.32922 -31.48651 -28.29149 -25.62744 -25.03379 -22.92320 -20.72797 -18.59135 -17.37707 -17.03523 -16.78432 -15.37783 -15.16318 -14.74809 -14.12056 -13.94079 -13.40850 -13.32928 -12.95280 -12.50164 -12.35968 -12.27660 -12.12177 -11.84728 -11.74295 -11.46683 -11.24650 -11.01258 -10.84240 -10.56172 -10.28542 -9.57007 -8.74778 -8.14738 -7.91889 -6.75340 -4.84409 1.79924 2.27402 2.92262 2.96376 2.99564 3.39364 3.73401 3.75407 4.19790 4.51700 4.56062 4.70723 5.16877 5.32140 5.58706 5.76154 5.81728 6.24496 6.27193 6.32186 6.48192 6.63016 6.88023 6.97610 7.10176 7.37848 7.84528 8.15782 8.27150 8.49006 9.50594 9.99337 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.025797 B = 0.008492 C = 0.006666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.136517 B = 3296.360019 C = 4199.209770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.207 4.207 3 C 0.211 3.789 4 C 0.301 3.699 5 N -0.445 5.445 6 N -0.439 5.439 7 C 0.248 3.752 8 C -0.413 4.413 9 H 0.094 0.906 10 C 0.064 3.936 11 N -0.707 5.707 12 Si 0.915 3.085 13 H -0.267 1.267 14 H -0.274 1.274 15 H -0.259 1.259 16 C -0.209 4.209 17 C -0.102 4.102 18 C 0.317 3.683 19 F -0.204 7.204 20 F -0.204 7.204 21 H 0.056 0.944 22 H 0.051 0.949 23 H 0.064 0.936 24 H 0.280 0.720 25 H 0.117 0.883 26 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.960 -7.622 -0.117 7.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.215 4.215 3 C 0.065 3.935 4 C -0.016 4.016 5 N -0.124 5.124 6 N -0.153 5.153 7 C 0.123 3.877 8 C -0.444 4.444 9 H 0.112 0.888 10 C -0.163 4.163 11 N -0.327 5.327 12 Si 0.738 3.262 13 H -0.192 1.192 14 H -0.199 1.199 15 H -0.182 1.182 16 C -0.234 4.234 17 C -0.109 4.109 18 C 0.264 3.736 19 F -0.185 7.185 20 F -0.185 7.185 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.083 0.917 24 H 0.091 0.909 25 H 0.135 0.865 26 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.348 -5.089 -0.125 5.266 hybrid contribution 0.539 -1.035 -0.090 1.170 sum -0.809 -6.124 -0.215 6.181 Atomic orbital electron populations 1.20591 0.92022 1.01897 1.01159 1.19588 0.95265 0.91701 1.14976 1.16472 0.90848 0.85066 1.01132 1.25470 0.91580 0.91943 0.92559 1.81043 1.11420 1.10386 1.09512 1.68742 1.02145 1.29924 1.14528 1.18418 0.93734 0.85210 0.90344 1.19729 0.89539 0.94513 1.40598 0.88756 1.26141 1.01267 0.95245 0.93681 1.70069 1.37576 0.98665 1.26412 0.86178 0.81259 0.79287 0.79464 1.19205 1.19903 1.18221 1.21760 0.92001 0.99364 1.10233 1.19836 0.94396 0.92355 1.04305 1.20392 0.84446 0.97929 0.70878 1.92970 1.76575 1.97436 1.51564 1.92932 1.76546 1.97301 1.51724 0.92571 0.93032 0.91748 0.90861 0.86494 0.86974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.80 8.66 36.01 0.31 -1.48 15 2 C -0.21 -4.30 5.92 -103.79 -0.61 -4.91 15 3 C 0.21 4.91 6.59 -85.08 -0.56 4.35 15 4 C 0.30 6.83 13.98 -22.47 -0.31 6.52 15 5 N -0.45 -10.10 18.54 41.84 0.78 -9.33 15 6 N -0.44 -11.15 7.80 -9.06 -0.07 -11.22 15 7 C 0.25 5.94 6.55 -85.01 -0.56 5.39 15 8 C -0.41 -9.64 9.14 -37.69 -0.34 -9.98 15 9 H 0.09 1.98 7.85 -52.48 -0.41 1.56 15 10 C 0.06 1.46 5.49 -17.35 -0.10 1.37 15 11 N -0.71 -17.51 11.49 55.55 0.64 -16.88 15 12 Si 0.91 16.81 29.56 -169.99 -5.03 11.78 15 13 H -0.27 -4.90 7.11 56.52 0.40 -4.50 15 14 H -0.27 -5.03 7.11 56.52 0.40 -4.63 15 15 H -0.26 -4.59 7.11 56.52 0.40 -4.19 15 16 C -0.21 -4.25 9.48 -38.62 -0.37 -4.62 15 17 C -0.10 -1.99 5.39 -104.43 -0.56 -2.55 15 18 C 0.32 5.01 4.96 36.01 0.18 5.18 15 19 F -0.20 -3.37 16.55 2.25 0.04 -3.33 15 20 F -0.20 -3.35 15.45 2.25 0.03 -3.31 15 21 H 0.06 0.97 8.14 -51.93 -0.42 0.55 15 22 H 0.05 0.92 7.08 -51.93 -0.37 0.55 15 23 H 0.06 1.10 5.67 -51.93 -0.29 0.81 15 24 H 0.28 6.33 8.29 -40.82 -0.34 5.99 15 25 H 0.12 2.01 7.99 -52.49 -0.42 1.59 15 26 H 0.11 1.37 7.93 -51.93 -0.41 0.95 15 LS Contribution 249.84 15.07 3.77 3.77 Total: -1.00 -26.34 249.84 -4.23 -30.57 By element: Atomic # 1 Polarization: 0.15 SS G_CDS: -1.46 Total: -1.31 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -2.92 Total: -0.74 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 1.34 Total: -37.43 kcal Atomic # 9 Polarization: -6.71 SS G_CDS: 0.07 Total: -6.64 kcal Atomic # 14 Polarization: 16.81 SS G_CDS: -5.03 Total: 11.78 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -26.34 -4.23 -30.57 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238523649.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.154 kcal (2) G-P(sol) polarization free energy of solvation -26.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds