Wall clock time and date at job start Mon Mar 30 2020 05:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39930 * 120.27508 * 2 1 4 4 C 1.43205 * 119.61597 * 0.02562 * 3 2 1 5 5 N 3.47913 * 80.35810 * 0.02562 * 2 1 3 6 6 N 1.32363 * 120.76589 * 180.02562 * 3 2 1 7 7 C 1.33370 * 121.41045 * 359.68456 * 6 3 2 8 8 C 1.41442 * 119.75736 * 180.28327 * 7 6 3 9 9 H 1.08003 * 119.99922 * 174.08611 * 8 7 6 10 10 C 1.40024 * 119.99863 * 354.08728 * 8 7 6 11 11 N 1.30735 * 120.00042 * 6.35481 * 10 8 7 12 12 Si 1.86800 * 119.99746 * 186.35066 * 10 8 7 13 13 H 1.48505 * 109.47077 * 94.98760 * 12 10 8 14 14 H 1.48501 * 109.47369 * 214.98472 * 12 10 8 15 15 H 1.48500 * 109.47415 * 334.98762 * 12 10 8 16 16 C 1.40807 * 120.48521 * 0.57919 * 7 6 3 17 17 C 1.38200 * 119.20067 * 359.45440 * 16 7 6 18 18 C 1.50703 * 120.65934 * 180.27612 * 17 16 7 19 19 F 1.39902 * 109.47309 * 119.99582 * 18 17 16 20 20 F 1.39892 * 109.47569 * 240.00326 * 18 17 16 21 21 H 1.09000 * 109.47475 * 269.97751 * 1 2 3 22 22 H 1.09002 * 109.47386 * 29.98411 * 1 2 3 23 23 H 1.09006 * 109.47071 * 149.97871 * 1 2 3 24 24 H 0.97001 * 119.99837 * 179.97438 * 11 10 8 25 25 H 1.07990 * 120.39663 * 179.73408 * 16 7 6 26 26 H 1.09002 * 109.46164 * 0.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2125 1.2085 0.0000 4 6 1.4941 2.4473 0.0006 5 7 0.9243 3.4300 0.0015 6 7 3.5361 1.2198 -0.0005 7 6 4.2409 0.0875 0.0052 8 6 5.6543 0.1405 0.0105 9 1 6.2283 -0.7688 0.1116 10 6 6.3092 1.3717 -0.1151 11 7 5.6195 2.4823 -0.1124 12 14 8.1685 1.4273 -0.2866 13 1 8.5313 1.4888 -1.7254 14 1 8.6940 2.6300 0.4082 15 1 8.7584 0.2074 0.3209 16 6 3.5883 -1.1602 -0.0002 17 6 2.2068 -1.1985 -0.0001 18 6 1.4746 -2.5157 0.0004 19 9 0.6717 -2.6025 1.1428 20 9 0.6716 -2.6033 -1.1418 21 1 -0.3634 -0.0004 1.0276 22 1 -0.3634 0.8901 -0.5136 23 1 -0.3633 -0.8898 -0.5142 24 1 6.0733 3.3352 -0.1991 25 1 4.1604 -2.0760 0.0001 26 1 2.1964 -3.3324 0.0011 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238523649.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:16 Heat of formation + Delta-G solvation = -61.850221 kcal Electronic energy + Delta-G solvation = -16182.145713 eV Core-core repulsion = 13088.800202 eV Total energy + Delta-G solvation = -3093.345511 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.87607 -47.81852 -40.65413 -37.56350 -35.89756 -33.98078 -33.13600 -29.89456 -27.06847 -26.73128 -24.51694 -22.35025 -20.14179 -19.06915 -18.41034 -18.04688 -16.82823 -16.75814 -16.37891 -15.69304 -15.55573 -14.90356 -14.81427 -14.21779 -14.21494 -13.92106 -13.82620 -13.67826 -13.49596 -13.27142 -12.99513 -12.77539 -12.61948 -12.36146 -11.92704 -11.80424 -11.20289 -10.40801 -9.84642 -9.63149 -8.42198 -6.58603 0.08565 0.65287 1.46331 1.47856 1.58996 1.60690 2.00893 2.22310 2.80074 2.81045 3.01053 3.40525 3.66818 3.91248 4.22537 4.23097 4.26995 4.64649 4.78339 4.82847 4.86458 5.11228 5.20832 5.33161 5.47991 5.76429 6.14406 6.38195 6.57990 6.76512 7.81250 8.35345 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.025797 B = 0.008492 C = 0.006666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.136517 B = 3296.360019 C = 4199.209770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.201 4.201 3 C 0.181 3.819 4 C 0.302 3.698 5 N -0.454 5.454 6 N -0.480 5.480 7 C 0.217 3.783 8 C -0.442 4.442 9 H 0.114 0.886 10 C 0.022 3.978 11 N -0.758 5.758 12 Si 0.989 3.011 13 H -0.266 1.266 14 H -0.278 1.278 15 H -0.243 1.243 16 C -0.193 4.193 17 C -0.111 4.111 18 C 0.323 3.677 19 F -0.207 7.207 20 F -0.207 7.207 21 H 0.066 0.934 22 H 0.049 0.951 23 H 0.077 0.923 24 H 0.280 0.720 25 H 0.154 0.846 26 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.577 -9.912 -0.132 9.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.210 4.210 3 C 0.037 3.963 4 C -0.014 4.014 5 N -0.133 5.133 6 N -0.196 5.196 7 C 0.091 3.909 8 C -0.473 4.473 9 H 0.132 0.868 10 C -0.200 4.200 11 N -0.380 5.380 12 Si 0.809 3.191 13 H -0.191 1.191 14 H -0.203 1.203 15 H -0.166 1.166 16 C -0.218 4.218 17 C -0.118 4.118 18 C 0.270 3.730 19 F -0.188 7.188 20 F -0.188 7.188 21 H 0.084 0.916 22 H 0.068 0.932 23 H 0.096 0.904 24 H 0.091 0.909 25 H 0.171 0.829 26 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.009 -7.389 -0.136 7.459 hybrid contribution 0.296 -0.393 -0.079 0.499 sum -0.713 -7.783 -0.216 7.818 Atomic orbital electron populations 1.20605 0.90214 1.02455 1.01945 1.20017 0.96685 0.91573 1.12677 1.16704 0.90821 0.85903 1.02836 1.25633 0.91419 0.92021 0.92279 1.81015 1.11855 1.10337 1.10076 1.68651 1.03136 1.31467 1.16310 1.18937 0.94559 0.86297 0.91066 1.20172 0.89870 0.95582 1.41674 0.86834 1.27071 1.05839 0.94600 0.92525 1.70204 1.39584 0.99357 1.28825 0.85067 0.75337 0.79458 0.79191 1.19124 1.20286 1.16629 1.22110 0.92713 0.99460 1.07486 1.20296 0.94506 0.93848 1.03133 1.20622 0.84818 0.97098 0.70505 1.92970 1.76753 1.97326 1.51797 1.92931 1.76716 1.97184 1.51948 0.91566 0.93204 0.90408 0.90919 0.82862 0.82104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.28 8.66 71.24 0.62 -2.66 15 2 C -0.20 -8.12 5.92 -19.32 -0.11 -8.24 15 3 C 0.18 8.52 6.59 40.72 0.27 8.79 15 4 C 0.30 14.02 13.98 88.33 1.24 15.25 15 5 N -0.45 -20.95 18.54 19.00 0.35 -20.59 15 6 N -0.48 -24.92 7.80 -182.58 -1.42 -26.35 15 7 C 0.22 10.38 6.55 40.33 0.26 10.65 15 8 C -0.44 -20.45 9.14 23.49 0.21 -20.24 15 9 H 0.11 4.57 7.85 -2.91 -0.02 4.55 15 10 C 0.02 1.01 5.49 85.29 0.47 1.48 15 11 N -0.76 -38.80 11.49 21.84 0.25 -38.55 15 12 Si 0.99 34.31 29.56 68.60 2.03 36.34 15 13 H -0.27 -9.10 7.11 99.48 0.71 -8.39 15 14 H -0.28 -9.65 7.11 99.48 0.71 -8.95 15 15 H -0.24 -7.74 7.11 99.48 0.71 -7.03 15 16 C -0.19 -7.43 9.48 22.89 0.22 -7.21 15 17 C -0.11 -4.03 5.39 -19.74 -0.11 -4.14 15 18 C 0.32 8.88 4.96 71.24 0.35 9.24 15 19 F -0.21 -6.08 16.55 44.97 0.74 -5.34 15 20 F -0.21 -6.04 15.45 44.97 0.69 -5.34 15 21 H 0.07 2.16 8.14 -2.39 -0.02 2.14 15 22 H 0.05 1.73 7.08 -2.39 -0.02 1.71 15 23 H 0.08 2.47 5.67 -2.38 -0.01 2.46 15 24 H 0.28 13.22 8.29 -92.71 -0.77 12.45 15 25 H 0.15 4.64 7.99 -2.92 -0.02 4.62 15 26 H 0.16 2.99 7.93 -2.39 -0.02 2.97 15 Total: -1.00 -57.68 249.84 7.30 -50.38 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: 1.24 Total: 6.54 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 3.42 Total: 2.92 kcal Atomic # 7 Polarization: -84.67 SS G_CDS: -0.82 Total: -85.49 kcal Atomic # 9 Polarization: -12.12 SS G_CDS: 1.44 Total: -10.68 kcal Atomic # 14 Polarization: 34.31 SS G_CDS: 2.03 Total: 36.34 kcal Total: -57.68 7.30 -50.38 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238523649.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.468 kcal (2) G-P(sol) polarization free energy of solvation -57.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds