Wall clock time and date at job start Mon Mar 30 2020 05:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.39987 * 120.27448 * 2 1 4 4 C 1.43196 * 119.45900 * 359.97438 * 3 2 1 5 5 N 3.47706 * 80.25430 * 359.97438 * 2 1 3 6 6 N 1.33171 * 121.08594 * 180.02562 * 3 2 1 7 7 C 1.31123 * 121.72985 * 359.97438 * 6 3 2 8 8 C 1.41100 * 120.42180 * 359.97438 * 7 6 3 9 9 C 1.40963 * 120.55119 * 180.02562 * 8 7 6 10 10 H 1.07997 * 120.00252 * 148.78213 * 9 8 7 11 11 C 1.40224 * 119.99533 * 328.78085 * 9 8 7 12 12 N 1.30663 * 120.00022 * 163.28551 * 11 9 8 13 13 Si 1.86794 * 120.00437 * 343.29090 * 11 9 8 14 14 H 1.48504 * 109.47449 * 94.99004 * 13 11 9 15 15 H 1.48501 * 109.47643 * 214.99274 * 13 11 9 16 16 H 1.48505 * 109.47004 * 334.99292 * 13 11 9 17 17 C 1.36682 * 120.27705 * 179.72084 * 2 1 3 18 18 C 1.50699 * 120.79756 * 0.02562 * 17 2 1 19 19 F 1.39896 * 109.46977 * 294.04052 * 18 17 2 20 20 F 1.39898 * 109.46945 * 54.03978 * 18 17 2 21 21 H 1.09006 * 109.47325 * 90.00591 * 1 2 3 22 22 H 1.08999 * 109.47698 * 330.00250 * 1 2 3 23 23 H 1.08998 * 109.47172 * 209.99673 * 1 2 3 24 24 H 1.07994 * 119.78900 * 180.02562 * 7 6 3 25 25 H 0.96996 * 120.00590 * 180.02562 * 12 11 9 26 26 H 1.09003 * 109.47289 * 174.03866 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2126 1.2090 0.0000 4 6 1.4909 2.4457 -0.0006 5 7 0.9183 3.4269 -0.0015 6 7 3.5442 1.2278 -0.0005 7 6 4.2495 0.1224 -0.0005 8 6 3.6082 -1.1344 0.0005 9 6 4.3637 -2.3244 0.0011 10 1 3.9781 -3.2087 0.4865 11 6 5.6160 -2.3599 -0.6288 12 7 6.4540 -3.3265 -0.3626 13 14 6.0864 -1.0256 -1.8484 14 1 6.8625 0.0312 -1.1511 15 1 6.9143 -1.6143 -2.9316 16 1 4.8564 -0.4326 -2.4322 17 6 2.1960 -1.1804 0.0058 18 6 1.4671 -2.4993 0.0116 19 9 0.7709 -2.6420 1.2166 20 9 0.5641 -2.5378 -1.0562 21 1 -0.3634 -0.0001 -1.0277 22 1 -0.3634 0.8900 0.5138 23 1 -0.3633 -0.8900 0.5138 24 1 5.3282 0.1743 -0.0005 25 1 7.3204 -3.3509 -0.7980 26 1 2.1861 -3.3122 -0.0911 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238524145.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:52 Heat of formation + Delta-G solvation = -59.780558 kcal Electronic energy + Delta-G solvation = -16480.353581 eV Core-core repulsion = 13387.097817 eV Total energy + Delta-G solvation = -3093.255764 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.38412 -46.31125 -39.37331 -35.89169 -34.51051 -33.29706 -31.97127 -27.69378 -26.88501 -25.07855 -22.10104 -21.34666 -18.68048 -17.87690 -17.09300 -16.56457 -16.00531 -15.19379 -15.03954 -14.11432 -13.89481 -13.53921 -13.27879 -13.15673 -12.73229 -12.47155 -12.43157 -12.36136 -12.10784 -11.99159 -11.77477 -11.40802 -11.21428 -10.98501 -10.44423 -10.39544 -9.84785 -8.98538 -8.66298 -8.11221 -7.62371 -5.24415 1.59233 2.00593 2.76880 2.87958 2.95067 3.33647 3.43053 3.54171 4.20326 4.45043 4.62006 4.84117 4.99428 5.26461 5.51562 5.57175 5.77655 5.87414 6.01267 6.15958 6.19838 6.38890 6.52533 6.77441 6.87755 7.27275 7.51080 7.75430 7.95964 8.21589 8.83240 9.33258 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.020970 B = 0.011876 C = 0.008333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.896917 B = 2357.049004 C = 3359.377931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.014 3.986 3 C 0.000 4.000 4 C 0.305 3.695 5 N -0.471 5.471 6 N -0.404 5.404 7 C -0.005 4.005 8 C 0.077 3.923 9 C -0.398 4.398 10 H 0.108 0.892 11 C 0.082 3.918 12 N -0.756 5.756 13 Si 0.908 3.092 14 H -0.255 1.255 15 H -0.277 1.277 16 H -0.239 1.239 17 C -0.251 4.251 18 C 0.323 3.677 19 F -0.212 7.212 20 F -0.211 7.211 21 H 0.076 0.924 22 H 0.063 0.937 23 H 0.075 0.925 24 H 0.147 0.853 25 H 0.301 0.699 26 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.781 -2.682 -1.415 3.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.009 3.991 3 C -0.132 4.132 4 C -0.008 4.008 5 N -0.151 5.151 6 N -0.112 5.112 7 C -0.177 4.177 8 C 0.070 3.930 9 C -0.424 4.424 10 H 0.126 0.874 11 C -0.145 4.145 12 N -0.375 5.375 13 Si 0.731 3.269 14 H -0.180 1.180 15 H -0.203 1.203 16 H -0.161 1.161 17 C -0.258 4.258 18 C 0.269 3.731 19 F -0.193 7.193 20 F -0.192 7.192 21 H 0.095 0.905 22 H 0.081 0.919 23 H 0.094 0.906 24 H 0.163 0.837 25 H 0.112 0.888 26 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.132 -0.533 -1.412 2.612 hybrid contribution 0.227 -0.817 -0.419 0.946 sum -1.905 -1.350 -1.831 2.967 Atomic orbital electron populations 1.20964 0.91493 1.02986 1.02742 1.19741 0.95584 0.92095 0.91650 1.15440 0.88561 0.85499 1.23688 1.25170 0.92132 0.91769 0.91703 1.81094 1.10347 1.10313 1.13309 1.66866 1.05910 1.32741 1.05710 1.22539 0.98571 0.86878 1.09670 1.18399 0.91010 0.94573 0.88968 1.19771 0.98962 0.97642 1.26061 0.87435 1.26411 0.94469 0.96977 0.96683 1.69546 1.06753 1.29062 1.32185 0.86317 0.81119 0.79791 0.79637 1.17989 1.20300 1.16139 1.19698 0.94003 0.92506 1.19601 1.20242 0.83783 0.98502 0.70542 1.92921 1.81957 1.96972 1.47439 1.92928 1.71226 1.97754 1.57315 0.90548 0.91854 0.90636 0.83653 0.88798 0.85758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.14 8.43 36.00 0.30 -1.84 15 2 C 0.01 0.28 5.86 -104.53 -0.61 -0.34 15 3 C 0.00 0.01 6.60 -84.71 -0.56 -0.55 15 4 C 0.31 6.40 13.96 -22.47 -0.31 6.09 15 5 N -0.47 -9.99 18.54 41.84 0.78 -9.22 15 6 N -0.40 -9.03 10.26 -10.37 -0.11 -9.14 15 7 C 0.00 -0.10 8.33 -16.77 -0.14 -0.24 15 8 C 0.08 1.64 5.09 -106.62 -0.54 1.10 15 9 C -0.40 -8.42 8.69 -37.80 -0.33 -8.75 15 10 H 0.11 2.28 6.84 -52.49 -0.36 1.92 15 11 C 0.08 1.69 5.42 -17.30 -0.09 1.59 15 12 N -0.76 -15.88 13.92 55.56 0.77 -15.10 15 13 Si 0.91 16.92 24.52 -169.99 -4.17 12.75 15 14 H -0.25 -4.62 6.73 56.52 0.38 -4.24 15 15 H -0.28 -4.94 7.11 56.52 0.40 -4.54 15 16 H -0.24 -4.76 6.84 56.52 0.39 -4.37 15 17 C -0.25 -5.11 5.43 -104.03 -0.57 -5.68 15 18 C 0.32 5.84 4.79 36.01 0.17 6.02 15 19 F -0.21 -3.84 15.90 2.25 0.04 -3.81 15 20 F -0.21 -3.78 16.01 2.25 0.04 -3.75 15 21 H 0.08 1.23 8.14 -51.93 -0.42 0.81 15 22 H 0.06 1.05 7.07 -51.93 -0.37 0.68 15 23 H 0.07 1.26 5.80 -51.93 -0.30 0.95 15 24 H 0.15 2.97 4.82 -52.49 -0.25 2.72 15 25 H 0.30 5.62 8.29 -40.82 -0.34 5.28 15 26 H 0.13 2.11 6.00 -51.93 -0.31 1.80 15 LS Contribution 239.39 15.07 3.61 3.61 Total: -1.00 -23.32 239.39 -2.91 -26.23 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -1.18 Total: 1.02 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -2.68 Total: -2.59 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 1.44 Total: -33.46 kcal Atomic # 9 Polarization: -7.63 SS G_CDS: 0.07 Total: -7.55 kcal Atomic # 14 Polarization: 16.92 SS G_CDS: -4.17 Total: 12.75 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -23.32 -2.91 -26.23 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238524145.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.553 kcal (2) G-P(sol) polarization free energy of solvation -23.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds