Wall clock time and date at job start Mon Mar 30 2020 05:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39887 * 120.77710 * 2 1 4 4 C 1.43210 * 120.66743 * 0.02689 * 3 2 1 5 5 N 3.49514 * 81.58006 * 0.02562 * 2 1 3 6 6 C 1.41950 * 118.66510 * 180.02562 * 3 2 1 7 7 C 1.40858 * 119.94705 * 179.97438 * 6 3 2 8 8 H 1.08000 * 119.99942 * 353.54293 * 7 6 3 9 9 C 1.40286 * 120.00149 * 173.53323 * 7 6 3 10 10 N 1.30604 * 120.00036 * 6.24311 * 9 7 6 11 11 Si 1.86798 * 120.00285 * 186.24133 * 9 7 6 12 12 H 1.48498 * 109.47086 * 94.98819 * 11 9 7 13 13 H 1.48493 * 109.47373 * 214.99080 * 11 9 7 14 14 H 1.48498 * 109.47034 * 334.99085 * 11 9 7 15 15 N 1.33637 * 120.10985 * 0.02569 * 6 3 2 16 16 C 1.31280 * 121.66831 * 359.97438 * 15 6 3 17 17 C 1.38396 * 120.78028 * 180.02562 * 2 1 3 18 18 C 1.50703 * 120.13419 * 0.25171 * 17 2 1 19 19 F 1.39902 * 109.47079 * 209.72270 * 18 17 2 20 20 F 1.39904 * 109.46880 * 329.72536 * 18 17 2 21 21 H 1.08995 * 109.47430 * 269.95447 * 1 2 3 22 22 H 1.08999 * 109.47288 * 29.95203 * 1 2 3 23 23 H 1.09003 * 109.46969 * 149.95342 * 1 2 3 24 24 H 0.96998 * 120.00695 * 179.97438 * 10 9 7 25 25 H 1.08010 * 119.30628 * 179.97438 * 16 15 6 26 26 H 1.08996 * 109.47007 * 89.72718 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2228 1.2019 0.0000 4 6 1.5383 2.4597 0.0006 5 7 0.9952 3.4575 0.0015 6 6 3.6414 1.1495 -0.0006 7 6 4.3890 2.3433 -0.0011 8 1 3.8880 3.2942 -0.1063 9 6 5.7845 2.2971 0.1352 10 7 6.4024 1.1465 0.1400 11 14 6.7589 3.8812 0.3097 12 1 6.9827 4.1686 1.7493 13 1 8.0684 3.7349 -0.3752 14 1 6.0004 4.9994 -0.3062 15 7 4.2687 -0.0304 -0.0016 16 6 3.6057 -1.1635 -0.0016 17 6 2.2153 -1.1890 -0.0005 18 6 1.4827 -2.5060 -0.0068 19 9 2.2545 -3.4721 0.6474 20 9 0.2580 -2.3615 0.6539 21 1 -0.3634 -0.0008 1.0276 22 1 -0.3634 0.8904 -0.5131 23 1 -0.3633 -0.8896 -0.5146 24 1 7.3673 1.1144 0.2338 25 1 4.1516 -2.0955 -0.0029 26 1 1.3057 -2.8183 -1.0360 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238528516.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:46 Heat of formation + Delta-G solvation = -53.259312 kcal Electronic energy + Delta-G solvation = -16230.646679 eV Core-core repulsion = 13137.673698 eV Total energy + Delta-G solvation = -3092.972981 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.44180 -46.47193 -38.85924 -35.43531 -34.45623 -32.58319 -31.01532 -27.95902 -26.73434 -24.20247 -22.63529 -20.90467 -17.75984 -17.61958 -16.96280 -16.60774 -15.80522 -15.36734 -14.83959 -14.21394 -13.58532 -13.24169 -13.10495 -12.78844 -12.52822 -12.30682 -12.06645 -11.94130 -11.91616 -11.75117 -11.38970 -11.26914 -11.10371 -10.96146 -10.53088 -10.12855 -9.69694 -8.38870 -8.09001 -8.02614 -6.91446 -5.07884 2.01020 2.33426 2.88932 2.92805 2.94586 3.65290 3.76523 4.10955 4.36103 4.44007 4.95771 5.19372 5.35634 5.48438 5.55823 5.63493 5.67998 5.91993 6.10815 6.30486 6.46384 6.64016 6.84841 7.01455 7.12286 7.49657 7.75884 8.08431 8.37630 8.64936 9.58925 9.78916 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.028975 B = 0.008540 C = 0.006686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.122034 B = 3277.891337 C = 4186.903606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.072 3.928 3 C -0.225 4.225 4 C 0.304 3.696 5 N -0.501 5.501 6 C 0.280 3.720 7 C -0.383 4.383 8 H 0.093 0.907 9 C 0.063 3.937 10 N -0.683 5.683 11 Si 0.915 3.085 12 H -0.263 1.263 13 H -0.269 1.269 14 H -0.256 1.256 15 N -0.476 5.476 16 C 0.191 3.809 17 C -0.378 4.378 18 C 0.337 3.663 19 F -0.212 7.212 20 F -0.211 7.211 21 H 0.074 0.926 22 H 0.056 0.944 23 H 0.075 0.925 24 H 0.285 0.715 25 H 0.135 0.865 26 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.036 -5.203 -1.178 5.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.064 3.936 3 C -0.234 4.234 4 C -0.006 4.006 5 N -0.180 5.180 6 C 0.158 3.842 7 C -0.411 4.411 8 H 0.111 0.889 9 C -0.168 4.168 10 N -0.301 5.301 11 Si 0.738 3.262 12 H -0.188 1.188 13 H -0.194 1.194 14 H -0.180 1.180 15 N -0.186 5.186 16 C 0.016 3.984 17 C -0.385 4.385 18 C 0.283 3.717 19 F -0.193 7.193 20 F -0.193 7.193 21 H 0.093 0.907 22 H 0.074 0.926 23 H 0.094 0.906 24 H 0.096 0.904 25 H 0.152 0.848 26 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.722 -3.664 -1.140 4.206 hybrid contribution -0.226 0.107 0.236 0.344 sum -1.949 -3.557 -0.904 4.155 Atomic orbital electron populations 1.21083 0.91921 1.02257 1.02614 1.19382 0.94295 0.91062 0.88877 1.16573 0.93536 0.85590 1.27696 1.25490 0.91369 0.92429 0.91335 1.81040 1.10968 1.11374 1.14623 1.18429 0.86257 0.92080 0.87447 1.19978 0.91657 0.93402 1.36067 0.88934 1.26274 0.98510 0.98407 0.93570 1.70011 1.10720 1.26167 1.23202 0.86135 0.79059 0.81103 0.79906 1.18778 1.19377 1.17968 1.68882 1.35989 0.96186 1.17498 1.22527 0.89140 0.97434 0.89296 1.20291 0.96130 0.92327 1.29733 1.19978 0.74868 0.85862 0.91024 1.92925 1.76143 1.65858 1.84378 1.92908 1.46014 1.96157 1.84208 0.90750 0.92550 0.90643 0.90375 0.84770 0.88203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.08 8.10 36.01 0.29 -1.79 15 2 C 0.07 1.47 5.92 -103.95 -0.61 0.85 15 3 C -0.22 -5.16 5.81 -105.93 -0.62 -5.77 15 4 C 0.30 6.99 12.54 -22.47 -0.28 6.71 15 5 N -0.50 -11.70 18.54 41.83 0.78 -10.92 15 6 C 0.28 6.93 6.57 -84.67 -0.56 6.38 15 7 C -0.38 -9.42 8.76 -37.82 -0.33 -9.75 15 8 H 0.09 2.26 6.91 -52.49 -0.36 1.89 15 9 C 0.06 1.43 5.49 -17.30 -0.10 1.34 15 10 N -0.68 -16.02 11.49 55.56 0.64 -15.38 15 11 Si 0.92 17.05 29.57 -169.99 -5.03 12.02 15 12 H -0.26 -4.87 7.11 56.52 0.40 -4.47 15 13 H -0.27 -4.81 7.11 56.52 0.40 -4.40 15 14 H -0.26 -4.84 7.11 56.52 0.40 -4.44 15 15 N -0.48 -11.57 7.88 -10.87 -0.09 -11.66 15 16 C 0.19 4.01 10.55 -17.48 -0.18 3.83 15 17 C -0.38 -7.34 5.76 -104.26 -0.60 -7.94 15 18 C 0.34 5.37 5.23 36.01 0.19 5.56 15 19 F -0.21 -3.53 16.48 2.25 0.04 -3.50 15 20 F -0.21 -3.45 13.89 2.25 0.03 -3.42 15 21 H 0.07 1.23 8.08 -51.93 -0.42 0.81 15 22 H 0.06 0.96 7.19 -51.93 -0.37 0.59 15 23 H 0.07 1.13 6.12 -51.93 -0.32 0.81 15 24 H 0.28 5.93 8.29 -40.82 -0.34 5.59 15 25 H 0.13 2.51 7.59 -52.48 -0.40 2.11 15 26 H 0.10 1.27 8.14 -51.93 -0.42 0.84 15 LS Contribution 246.23 15.07 3.71 3.71 Total: -1.00 -26.24 246.23 -4.15 -30.39 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: -1.43 Total: -0.66 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -2.80 Total: -0.58 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 1.33 Total: -37.96 kcal Atomic # 9 Polarization: -6.99 SS G_CDS: 0.07 Total: -6.92 kcal Atomic # 14 Polarization: 17.05 SS G_CDS: -5.03 Total: 12.02 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -26.24 -4.15 -30.39 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238528516.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.872 kcal (2) G-P(sol) polarization free energy of solvation -26.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds