Wall clock time and date at job start Mon Mar 30 2020 05:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39887 * 120.77710 * 2 1 4 4 C 1.43210 * 120.66743 * 0.02689 * 3 2 1 5 5 N 3.49514 * 81.58006 * 0.02562 * 2 1 3 6 6 C 1.41950 * 118.66510 * 180.02562 * 3 2 1 7 7 C 1.40858 * 119.94705 * 179.97438 * 6 3 2 8 8 H 1.08000 * 119.99942 * 353.54293 * 7 6 3 9 9 C 1.40286 * 120.00149 * 173.53323 * 7 6 3 10 10 N 1.30604 * 120.00036 * 6.24311 * 9 7 6 11 11 Si 1.86798 * 120.00285 * 186.24133 * 9 7 6 12 12 H 1.48498 * 109.47086 * 94.98819 * 11 9 7 13 13 H 1.48493 * 109.47373 * 214.99080 * 11 9 7 14 14 H 1.48498 * 109.47034 * 334.99085 * 11 9 7 15 15 N 1.33637 * 120.10985 * 0.02569 * 6 3 2 16 16 C 1.31280 * 121.66831 * 359.97438 * 15 6 3 17 17 C 1.38396 * 120.78028 * 180.02562 * 2 1 3 18 18 C 1.50703 * 120.13419 * 0.25171 * 17 2 1 19 19 F 1.39902 * 109.47079 * 209.72270 * 18 17 2 20 20 F 1.39904 * 109.46880 * 329.72536 * 18 17 2 21 21 H 1.08995 * 109.47430 * 269.95447 * 1 2 3 22 22 H 1.08999 * 109.47288 * 29.95203 * 1 2 3 23 23 H 1.09003 * 109.46969 * 149.95342 * 1 2 3 24 24 H 0.96998 * 120.00695 * 179.97438 * 10 9 7 25 25 H 1.08010 * 119.30628 * 179.97438 * 16 15 6 26 26 H 1.08996 * 109.47007 * 89.72718 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2228 1.2019 0.0000 4 6 1.5383 2.4597 0.0006 5 7 0.9952 3.4575 0.0015 6 6 3.6414 1.1495 -0.0006 7 6 4.3890 2.3433 -0.0011 8 1 3.8880 3.2942 -0.1063 9 6 5.7845 2.2971 0.1352 10 7 6.4024 1.1465 0.1400 11 14 6.7589 3.8812 0.3097 12 1 6.9827 4.1686 1.7493 13 1 8.0684 3.7349 -0.3752 14 1 6.0004 4.9994 -0.3062 15 7 4.2687 -0.0304 -0.0016 16 6 3.6057 -1.1635 -0.0016 17 6 2.2153 -1.1890 -0.0005 18 6 1.4827 -2.5060 -0.0068 19 9 2.2545 -3.4721 0.6474 20 9 0.2580 -2.3615 0.6539 21 1 -0.3634 -0.0008 1.0276 22 1 -0.3634 0.8904 -0.5131 23 1 -0.3633 -0.8896 -0.5146 24 1 7.3673 1.1144 0.2338 25 1 4.1516 -2.0955 -0.0029 26 1 1.3057 -2.8183 -1.0360 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238528516.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:46 Heat of formation + Delta-G solvation = -67.237802 kcal Electronic energy + Delta-G solvation = -16231.252832 eV Core-core repulsion = 13137.673698 eV Total energy + Delta-G solvation = -3093.579134 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.73384 -47.76491 -40.55601 -37.24358 -36.13308 -34.23362 -32.70255 -29.51184 -28.35380 -25.72817 -24.27535 -22.54638 -19.40181 -19.27884 -18.26813 -18.04428 -17.37976 -16.88735 -16.45209 -15.77319 -15.21054 -14.57683 -14.45305 -14.40465 -14.05329 -13.85407 -13.68464 -13.66015 -13.51938 -13.39658 -12.92363 -12.87234 -12.64874 -12.48012 -11.99671 -11.66428 -11.32703 -10.04815 -9.80867 -9.74658 -8.60027 -6.87010 0.27964 0.70444 1.36042 1.44745 1.49578 1.95388 2.11804 2.35076 2.62789 3.16495 3.41241 3.64426 3.72016 4.01519 4.06156 4.15991 4.33669 4.37202 4.75689 4.80080 4.93060 4.97825 5.21987 5.36236 5.49727 5.84483 5.96856 6.34473 6.61042 6.84950 7.87136 8.13246 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.028975 B = 0.008540 C = 0.006686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.122034 B = 3277.891337 C = 4186.903606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.071 3.929 3 C -0.250 4.250 4 C 0.311 3.689 5 N -0.516 5.516 6 C 0.261 3.739 7 C -0.419 4.419 8 H 0.082 0.918 9 C 0.029 3.971 10 N -0.713 5.713 11 Si 0.983 3.017 12 H -0.260 1.260 13 H -0.253 1.253 14 H -0.264 1.264 15 N -0.507 5.507 16 C 0.183 3.817 17 C -0.369 4.369 18 C 0.341 3.659 19 F -0.215 7.215 20 F -0.211 7.211 21 H 0.081 0.919 22 H 0.052 0.948 23 H 0.102 0.898 24 H 0.294 0.706 25 H 0.156 0.844 26 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.464 -6.261 -1.363 6.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.062 3.938 3 C -0.259 4.259 4 C 0.001 3.999 5 N -0.196 5.196 6 C 0.139 3.861 7 C -0.448 4.448 8 H 0.100 0.900 9 C -0.198 4.198 10 N -0.332 5.332 11 Si 0.802 3.198 12 H -0.184 1.184 13 H -0.177 1.177 14 H -0.188 1.188 15 N -0.218 5.218 16 C 0.010 3.990 17 C -0.375 4.375 18 C 0.287 3.713 19 F -0.196 7.196 20 F -0.192 7.192 21 H 0.099 0.901 22 H 0.071 0.929 23 H 0.121 0.879 24 H 0.106 0.894 25 H 0.173 0.827 26 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.166 -4.756 -1.325 5.392 hybrid contribution -0.170 0.293 0.299 0.452 sum -2.336 -4.463 -1.027 5.141 Atomic orbital electron populations 1.21124 0.89388 1.03445 1.03336 1.19780 0.96125 0.90377 0.87503 1.16751 0.93323 0.86531 1.29307 1.25575 0.91024 0.92402 0.90926 1.81018 1.11616 1.11497 1.15463 1.18713 0.87235 0.92529 0.87633 1.20131 0.93022 0.93144 1.38484 0.89995 1.26985 0.98622 1.01440 0.92793 1.70026 1.11546 1.27837 1.23790 0.85165 0.77962 0.76800 0.79886 1.18410 1.17652 1.18775 1.68837 1.37165 0.96846 1.18929 1.22965 0.90340 0.97346 0.88365 1.20682 0.95802 0.94075 1.26964 1.20197 0.74182 0.83845 0.93072 1.92926 1.76343 1.65625 1.84712 1.92910 1.45764 1.96078 1.84492 0.90085 0.92874 0.87935 0.89399 0.82659 0.83499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.68 8.10 71.24 0.58 -3.10 15 2 C 0.07 2.77 5.92 -19.43 -0.11 2.66 15 3 C -0.25 -11.53 5.81 -20.71 -0.12 -11.65 15 4 C 0.31 14.42 12.54 88.34 1.11 15.52 15 5 N -0.52 -24.28 18.54 19.01 0.35 -23.93 15 6 C 0.26 13.21 6.57 40.43 0.27 13.47 15 7 C -0.42 -21.27 8.76 23.41 0.21 -21.06 15 8 H 0.08 4.16 6.91 -2.91 -0.02 4.14 15 9 C 0.03 1.35 5.49 85.37 0.47 1.81 15 10 N -0.71 -33.84 11.49 21.88 0.25 -33.59 15 11 Si 0.98 35.19 29.57 68.60 2.03 37.22 15 12 H -0.26 -9.07 7.11 99.48 0.71 -8.36 15 13 H -0.25 -8.30 7.11 99.48 0.71 -7.59 15 14 H -0.26 -9.64 7.11 99.48 0.71 -8.94 15 15 N -0.51 -24.85 7.88 -188.31 -1.48 -26.34 15 16 C 0.18 7.50 10.55 84.97 0.90 8.39 15 17 C -0.37 -13.49 5.76 -19.63 -0.11 -13.60 15 18 C 0.34 9.54 5.23 71.24 0.37 9.91 15 19 F -0.21 -6.44 16.48 44.97 0.74 -5.70 15 20 F -0.21 -6.06 13.89 44.97 0.62 -5.44 15 21 H 0.08 2.48 8.08 -2.39 -0.02 2.46 15 22 H 0.05 1.71 7.19 -2.39 -0.02 1.70 15 23 H 0.10 2.67 6.12 -2.39 -0.01 2.65 15 24 H 0.29 12.30 8.29 -92.71 -0.77 11.53 15 25 H 0.16 5.54 7.59 -2.91 -0.02 5.52 15 26 H 0.15 2.93 8.14 -2.39 -0.02 2.91 15 Total: -1.00 -56.68 246.23 7.30 -49.39 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: 1.24 Total: 6.03 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: 3.55 Total: 2.36 kcal Atomic # 7 Polarization: -82.97 SS G_CDS: -0.88 Total: -83.85 kcal Atomic # 9 Polarization: -12.50 SS G_CDS: 1.37 Total: -11.14 kcal Atomic # 14 Polarization: 35.19 SS G_CDS: 2.03 Total: 37.22 kcal Total: -56.68 7.30 -49.39 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238528516.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.852 kcal (2) G-P(sol) polarization free energy of solvation -56.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds