Wall clock time and date at job start Mon Mar 30 2020 05:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31550 * 119.63964 * 2 1 4 4 C 1.31854 * 122.16393 * 180.33825 * 3 2 1 5 5 C 1.39959 * 121.11494 * 359.65332 * 4 3 2 6 6 C 1.43194 * 120.44255 * 179.97438 * 5 4 3 7 7 N 4.75530 * 140.38277 * 0.37392 * 3 1 2 8 8 C 1.39465 * 119.11522 * 0.02696 * 5 4 3 9 9 C 1.50700 * 120.97096 * 179.97438 * 8 5 4 10 10 F 1.39897 * 109.47584 * 120.01430 * 9 8 5 11 11 F 1.39907 * 109.47045 * 240.01873 * 9 8 5 12 12 C 1.40786 * 119.63045 * 179.70753 * 2 1 3 13 13 C 1.41441 * 120.59442 * 359.97438 * 12 2 1 14 14 H 1.08001 * 120.00307 * 231.27288 * 13 12 2 15 15 C 1.39949 * 120.00085 * 51.54269 * 13 12 2 16 16 N 1.30827 * 119.99988 * 206.65825 * 15 13 12 17 17 Si 1.86795 * 119.99591 * 26.65545 * 15 13 12 18 18 H 1.48499 * 109.46933 * 89.98391 * 17 15 13 19 19 H 1.48508 * 109.47049 * 209.98172 * 17 15 13 20 20 H 1.48496 * 109.47472 * 329.98264 * 17 15 13 21 21 H 1.09003 * 109.47150 * 264.26313 * 1 2 3 22 22 H 1.09002 * 109.47010 * 24.26176 * 1 2 3 23 23 H 1.09003 * 109.47669 * 144.26028 * 1 2 3 24 24 H 1.08003 * 119.44481 * 179.67837 * 4 3 2 25 25 H 1.09001 * 109.46769 * 0.02562 * 9 8 5 26 26 H 0.96997 * 119.99861 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1575 1.1434 0.0000 4 6 3.4748 1.2015 -0.0066 5 6 4.2501 0.0362 -0.0067 6 6 5.6798 0.1161 -0.0145 7 7 6.8141 0.1794 -0.0198 8 6 3.6116 -1.2037 -0.0003 9 6 4.4054 -2.4847 -0.0008 10 9 4.0959 -3.2256 1.1448 11 9 4.0852 -3.2313 -1.1398 12 6 2.2030 -1.2237 0.0062 13 6 1.5006 -2.4514 0.0131 14 1 1.7406 -3.2068 0.7467 15 6 0.4985 -2.6895 -0.9344 16 7 -0.4773 -3.5168 -0.6606 17 14 0.5542 -1.8260 -2.5898 18 1 1.3190 -2.6555 -3.5553 19 1 -0.8293 -1.6300 -3.0927 20 1 1.2171 -0.5060 -2.4375 21 1 -0.3633 -0.1027 1.0225 22 1 -0.3633 0.9369 -0.4223 23 1 -0.3634 -0.8341 -0.6003 24 1 3.9637 2.1645 -0.0116 25 1 5.4703 -2.2522 -0.0061 26 1 -1.1717 -3.6821 -1.3174 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238573719.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:29 Heat of formation + Delta-G solvation = -58.543364 kcal Electronic energy + Delta-G solvation = -16761.549836 eV Core-core repulsion = 13668.347721 eV Total energy + Delta-G solvation = -3093.202115 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.82718 -47.83133 -41.03402 -37.89813 -36.03044 -34.41747 -33.30734 -29.51243 -28.58840 -26.40271 -23.90415 -22.42428 -20.57493 -18.86369 -18.51202 -18.09564 -17.85308 -16.95162 -16.62523 -15.60866 -15.50415 -14.94430 -14.68183 -14.64716 -14.55395 -14.22341 -14.10531 -13.83519 -13.69427 -13.51089 -13.05543 -12.92306 -12.66477 -12.23042 -12.09497 -11.89644 -11.06925 -10.60430 -10.36841 -9.50166 -8.89100 -6.57838 -0.33074 0.35773 1.26396 1.36846 1.41005 1.44936 1.90857 2.08133 2.55839 2.73152 2.85064 3.10103 3.27710 3.61896 3.67997 4.15448 4.25421 4.39909 4.60854 4.71123 4.88239 5.14922 5.17595 5.25222 5.32333 5.76552 6.20024 6.27336 6.39736 6.68857 7.22933 8.16466 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.023892 B = 0.012767 C = 0.010112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.638523 B = 2192.549236 C = 2768.334212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.086 3.914 3 N -0.467 5.467 4 C 0.060 3.940 5 C -0.033 4.033 6 C 0.282 3.718 7 N -0.440 5.440 8 C -0.198 4.198 9 C 0.332 3.668 10 F -0.208 7.208 11 F -0.204 7.204 12 C 0.058 3.942 13 C -0.489 4.489 14 H 0.073 0.927 15 C 0.084 3.916 16 N -0.820 5.820 17 Si 0.913 3.087 18 H -0.274 1.274 19 H -0.250 1.250 20 H -0.243 1.243 21 H 0.080 0.920 22 H 0.082 0.918 23 H 0.064 0.936 24 H 0.185 0.815 25 H 0.120 0.880 26 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.231 5.190 -1.602 5.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.058 4.058 3 N -0.175 5.175 4 C -0.097 4.097 5 C -0.038 4.038 6 C -0.033 4.033 7 N -0.116 5.116 8 C -0.208 4.208 9 C 0.279 3.721 10 F -0.190 7.190 11 F -0.185 7.185 12 C 0.053 3.947 13 C -0.519 4.519 14 H 0.091 0.909 15 C -0.134 4.134 16 N -0.444 5.444 17 Si 0.734 3.266 18 H -0.200 1.200 19 H -0.173 1.173 20 H -0.166 1.166 21 H 0.098 0.902 22 H 0.101 0.899 23 H 0.082 0.918 24 H 0.202 0.798 25 H 0.138 0.862 26 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.286 5.863 -1.633 6.916 hybrid contribution -0.073 -1.226 -0.488 1.321 sum 3.214 4.637 -2.120 6.027 Atomic orbital electron populations 1.20687 0.88594 1.02269 1.03325 1.22082 0.97403 0.87566 0.98788 1.67172 1.09734 1.29137 1.11428 1.22737 0.88361 0.96695 1.01919 1.16613 0.84650 0.94960 1.07624 1.25485 0.92179 0.92886 0.92747 1.81223 1.11932 1.08280 1.10132 1.21118 0.95286 0.92618 1.11764 1.20123 0.97992 0.82833 0.71175 1.92950 1.95163 1.79260 1.51581 1.92964 1.95016 1.78783 1.51776 1.18206 0.90401 0.94884 0.91199 1.18963 1.15941 1.00905 1.16057 0.90911 1.26249 0.91353 0.94051 1.01744 1.69769 1.07732 1.30443 1.36487 0.86318 0.80068 0.81136 0.79064 1.19992 1.17324 1.16646 0.90176 0.89920 0.91771 0.79787 0.86250 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.41 8.93 71.23 0.64 -2.77 15 2 C 0.09 3.53 5.25 43.22 0.23 3.75 15 3 N -0.47 -17.55 10.23 -180.73 -1.85 -19.40 15 4 C 0.06 1.97 10.91 85.11 0.93 2.90 15 5 C -0.03 -1.14 5.74 -21.32 -0.12 -1.26 15 6 C 0.28 9.03 13.68 88.33 1.21 10.24 15 7 N -0.44 -14.53 18.54 19.00 0.35 -14.18 15 8 C -0.20 -8.02 5.48 -18.92 -0.10 -8.12 15 9 C 0.33 12.97 4.93 71.24 0.35 13.32 15 10 F -0.21 -8.80 16.08 44.97 0.72 -8.08 15 11 F -0.20 -8.71 16.67 44.97 0.75 -7.96 15 12 C 0.06 2.59 4.34 -21.22 -0.09 2.50 15 13 C -0.49 -24.19 7.49 23.47 0.18 -24.01 15 14 H 0.07 4.04 7.15 -2.91 -0.02 4.02 15 15 C 0.08 4.00 3.81 85.26 0.32 4.33 15 16 N -0.82 -39.96 13.93 21.83 0.30 -39.66 15 17 Si 0.91 37.39 25.25 68.60 1.73 39.12 15 18 H -0.27 -11.50 7.11 99.48 0.71 -10.79 15 19 H -0.25 -9.25 7.11 99.48 0.71 -8.54 15 20 H -0.24 -9.97 6.00 99.48 0.60 -9.37 15 21 H 0.08 2.85 8.14 -2.39 -0.02 2.83 15 22 H 0.08 2.65 8.14 -2.39 -0.02 2.63 15 23 H 0.06 2.55 3.19 -2.39 -0.01 2.54 15 24 H 0.19 4.60 8.06 -2.91 -0.02 4.57 15 25 H 0.12 3.91 6.58 -2.39 -0.02 3.89 15 26 H 0.30 12.98 8.30 -92.71 -0.77 12.21 15 Total: -1.00 -51.96 241.01 6.68 -45.28 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: 1.13 Total: 3.99 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 3.53 Total: 0.88 kcal Atomic # 7 Polarization: -72.04 SS G_CDS: -1.19 Total: -73.23 kcal Atomic # 9 Polarization: -17.50 SS G_CDS: 1.47 Total: -16.03 kcal Atomic # 14 Polarization: 37.39 SS G_CDS: 1.73 Total: 39.12 kcal Total: -51.96 6.68 -45.28 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238573719.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.260 kcal (2) G-P(sol) polarization free energy of solvation -51.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds