Wall clock time and date at job start Mon Mar 30 2020 05:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31597 * 119.66707 * 2 1 4 4 C 1.31982 * 123.17470 * 179.97438 * 3 2 1 5 5 C 1.37590 * 122.00339 * 0.04720 * 4 3 2 6 6 C 1.50702 * 120.54494 * 180.25088 * 5 4 3 7 7 F 1.39896 * 109.46891 * 22.57883 * 6 5 4 8 8 F 1.39903 * 109.47203 * 142.57596 * 6 5 4 9 9 C 1.41157 * 118.91866 * 359.97239 * 5 4 3 10 10 C 1.40923 * 121.36870 * 180.02562 * 9 5 4 11 11 H 1.08003 * 120.00029 * 318.13068 * 10 9 5 12 12 C 1.40321 * 119.99794 * 138.12493 * 10 9 5 13 13 N 1.30590 * 120.00232 * 339.38901 * 12 10 9 14 14 Si 1.86803 * 119.99909 * 159.39564 * 12 10 9 15 15 H 1.48496 * 109.47591 * 89.99556 * 14 12 10 16 16 H 1.48500 * 109.46963 * 210.00135 * 14 12 10 17 17 H 1.48500 * 109.46955 * 329.99381 * 14 12 10 18 18 C 1.39549 * 119.66906 * 180.02562 * 2 1 3 19 19 C 1.43197 * 121.01843 * 359.97438 * 18 2 1 20 20 N 3.49786 * 80.67923 * 180.02562 * 2 1 3 21 21 H 1.09001 * 109.47022 * 269.97684 * 1 2 3 22 22 H 1.09000 * 109.46989 * 29.98317 * 1 2 3 23 23 H 1.09007 * 109.46816 * 149.98040 * 1 2 3 24 24 H 1.08002 * 119.00092 * 180.02562 * 4 3 2 25 25 H 1.08997 * 109.47339 * 262.57783 * 6 5 4 26 26 H 0.96995 * 120.00291 * 176.83608 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1584 1.1435 0.0000 4 6 3.4757 1.2242 0.0005 5 6 4.2749 0.1042 0.0001 6 6 5.7763 0.2347 0.0064 7 9 6.1334 1.4867 0.5181 8 9 6.3285 -0.7710 0.8069 9 6 3.6657 -1.1691 -0.0003 10 6 4.4345 -2.3501 -0.0002 11 1 5.3130 -2.4227 -0.6241 12 6 4.0585 -3.4319 0.8107 13 7 3.2757 -3.2370 1.8377 14 14 4.6781 -5.1506 0.4214 15 1 5.9616 -5.3866 1.1299 16 1 3.6753 -6.1510 0.8673 17 1 4.8896 -5.2806 -1.0427 18 6 2.1978 -1.2125 -0.0005 19 6 1.4967 -2.4612 -0.0006 20 7 0.9405 -3.4517 -0.0015 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3633 0.8901 -0.5136 23 1 -0.3633 -0.8899 -0.5142 24 1 3.9406 2.1991 0.0009 25 1 6.1538 0.1371 -1.0115 26 1 2.9787 -3.9908 2.3711 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238579901.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:51 Heat of formation + Delta-G solvation = -75.049692 kcal Electronic energy + Delta-G solvation = -16589.070341 eV Core-core repulsion = 13495.152458 eV Total energy + Delta-G solvation = -3093.917883 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.59957 -47.61036 -40.48545 -37.25321 -36.03297 -34.03064 -32.71146 -29.63912 -28.18695 -25.81724 -24.56687 -22.21389 -19.63338 -19.04091 -18.22598 -18.00256 -17.22914 -16.85038 -16.53114 -15.92258 -15.30886 -14.56456 -14.45042 -14.09097 -13.99831 -13.87491 -13.74557 -13.62022 -13.50768 -13.36122 -12.95982 -12.87651 -12.78182 -12.44344 -12.16001 -11.81953 -11.18613 -10.09701 -9.95779 -9.52177 -8.99937 -6.79818 0.10563 0.66708 1.27377 1.37643 1.40679 2.03276 2.10310 2.34461 2.66605 3.15986 3.38671 3.50142 3.65539 3.83608 4.12842 4.20693 4.37218 4.52484 4.74922 4.82049 4.87770 4.99390 5.15851 5.32657 5.49246 5.86091 6.12291 6.42854 6.52461 6.99973 7.44435 7.97413 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.018588 B = 0.014464 C = 0.008573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.989721 B = 1935.423354 C = 3265.364687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.196 3.804 3 N -0.576 5.576 4 C 0.171 3.829 5 C -0.335 4.335 6 C 0.339 3.661 7 F -0.213 7.213 8 F -0.209 7.209 9 C 0.179 3.821 10 C -0.456 4.456 11 H 0.108 0.892 12 C 0.054 3.946 13 N -0.787 5.787 14 Si 0.952 3.048 15 H -0.249 1.249 16 H -0.280 1.280 17 H -0.248 1.248 18 C -0.201 4.201 19 C 0.330 3.670 20 N -0.517 5.517 21 H 0.082 0.918 22 H 0.096 0.904 23 H 0.063 0.937 24 H 0.167 0.833 25 H 0.140 0.860 26 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.888 4.390 -3.575 6.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.058 3.942 3 N -0.290 5.290 4 C 0.017 3.983 5 C -0.341 4.341 6 C 0.285 3.715 7 F -0.195 7.195 8 F -0.190 7.190 9 C 0.169 3.831 10 C -0.484 4.484 11 H 0.126 0.874 12 C -0.168 4.168 13 N -0.410 5.410 14 Si 0.773 3.227 15 H -0.173 1.173 16 H -0.205 1.205 17 H -0.171 1.171 18 C -0.209 4.209 19 C 0.019 3.981 20 N -0.196 5.196 21 H 0.100 0.900 22 H 0.115 0.885 23 H 0.081 0.919 24 H 0.184 0.816 25 H 0.157 0.843 26 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.493 3.562 -3.309 5.086 hybrid contribution 0.935 -1.321 0.433 1.676 sum 2.428 2.240 -2.877 4.380 Atomic orbital electron populations 1.20731 0.88014 1.03451 1.03365 1.21339 0.96957 0.86801 0.89078 1.67245 1.09980 1.27277 1.24526 1.22317 0.88895 0.97855 0.89187 1.21358 0.95720 0.94912 1.22066 1.20050 0.88909 0.70064 0.92471 1.92897 1.92982 1.43583 1.89996 1.92974 1.86764 1.61700 1.77574 1.18530 0.89303 0.92435 0.82826 1.19824 1.10655 0.96960 1.20999 0.87449 1.26590 0.93435 1.04276 0.92505 1.69654 1.25068 1.35634 1.10611 0.85597 0.79337 0.76775 0.81033 1.17265 1.20507 1.17095 1.18082 0.92925 0.87098 1.22837 1.25216 0.90414 0.92139 0.90344 1.80927 1.13062 1.11228 1.14424 0.89980 0.88481 0.91853 0.81640 0.84279 0.89670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.26 9.79 71.24 0.70 -2.56 15 2 C 0.20 8.09 6.83 42.91 0.29 8.38 15 3 N -0.58 -23.17 10.17 -183.43 -1.87 -25.04 15 4 C 0.17 6.50 10.52 84.52 0.89 7.39 15 5 C -0.33 -13.62 5.79 -19.30 -0.11 -13.73 15 6 C 0.34 11.78 5.35 71.24 0.38 12.16 15 7 F -0.21 -7.08 16.29 44.97 0.73 -6.35 15 8 F -0.21 -8.51 15.06 44.97 0.68 -7.84 15 9 C 0.18 8.33 5.43 -19.65 -0.11 8.22 15 10 C -0.46 -21.35 6.71 23.43 0.16 -21.19 15 11 H 0.11 4.67 7.52 -2.91 -0.02 4.65 15 12 C 0.05 2.54 4.20 85.38 0.36 2.90 15 13 N -0.79 -39.64 11.20 21.89 0.25 -39.39 15 14 Si 0.95 37.52 29.61 68.60 2.03 39.55 15 15 H -0.25 -9.18 7.11 99.48 0.71 -8.47 15 16 H -0.28 -11.39 7.11 99.48 0.71 -10.68 15 17 H -0.25 -9.39 7.11 99.48 0.71 -8.68 15 18 C -0.20 -9.30 5.63 -19.46 -0.11 -9.41 15 19 C 0.33 15.84 10.39 88.33 0.92 16.76 15 20 N -0.52 -25.36 18.51 19.00 0.35 -25.01 15 21 H 0.08 2.58 8.14 -2.39 -0.02 2.56 15 22 H 0.10 2.73 8.14 -2.39 -0.02 2.71 15 23 H 0.06 2.10 7.10 -2.38 -0.02 2.09 15 24 H 0.17 5.24 7.39 -2.91 -0.02 5.22 15 25 H 0.14 3.75 8.14 -2.39 -0.02 3.73 15 26 H 0.29 14.06 8.29 -92.71 -0.77 13.29 15 Total: -1.00 -55.53 247.54 6.77 -48.76 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: 1.23 Total: 6.41 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: 3.37 Total: 8.92 kcal Atomic # 7 Polarization: -88.17 SS G_CDS: -1.27 Total: -89.44 kcal Atomic # 9 Polarization: -15.60 SS G_CDS: 1.41 Total: -14.19 kcal Atomic # 14 Polarization: 37.52 SS G_CDS: 2.03 Total: 39.55 kcal Total: -55.53 6.77 -48.76 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238579901.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.292 kcal (2) G-P(sol) polarization free energy of solvation -55.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds