Wall clock time and date at job start Mon Mar 30 2020 05:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86796 * 119.99921 * 2 1 4 4 H 1.48499 * 109.47512 * 239.99876 * 3 2 1 5 5 H 1.48504 * 109.47246 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47306 * 119.99931 * 3 2 1 7 7 C 1.39890 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99924 * 197.24004 * 7 2 1 9 9 C 1.41118 * 120.00031 * 17.51044 * 7 2 1 10 10 C 1.40953 * 120.39603 * 24.92670 * 9 7 2 11 11 C 1.36418 * 120.07238 * 180.02562 * 10 9 7 12 12 C 1.39161 * 120.65279 * 359.97438 * 11 10 9 13 13 F 1.35103 * 119.90427 * 179.97438 * 12 11 10 14 14 C 1.38888 * 120.19261 * 359.97185 * 12 11 10 15 15 C 1.38283 * 120.08332 * 359.74511 * 14 12 11 16 16 O 1.36165 * 119.74222 * 179.84213 * 15 14 12 17 17 C 1.42927 * 116.12959 * 291.97515 * 16 15 14 18 18 C 1.52076 * 110.73013 * 84.31954 * 17 16 15 19 19 C 1.52075 * 112.35036 * 295.29210 * 18 17 16 20 20 O 1.36533 * 120.32455 * 179.97438 * 14 12 11 21 21 H 0.96999 * 119.99817 * 0.02562 * 1 2 3 22 22 H 1.08001 * 119.96396 * 0.05117 * 10 9 7 23 23 H 1.07995 * 119.67477 * 180.02562 * 11 10 9 24 24 H 1.09001 * 109.22682 * 324.00065 * 17 16 15 25 25 H 1.08997 * 109.22583 * 204.64250 * 17 16 15 26 26 H 1.09002 * 108.90783 * 174.55560 * 18 17 16 27 27 H 1.09000 * 108.90785 * 56.03484 * 18 17 16 28 28 H 1.08998 * 109.21828 * 304.41440 * 19 18 17 29 29 H 1.08997 * 109.22164 * 185.07120 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.0968 1.6965 -1.2124 5 1 1.2780 2.7465 -0.0006 6 1 3.0967 1.6964 1.2125 7 6 2.0085 -1.2115 0.0005 8 1 3.0521 -1.2323 0.2778 9 6 1.3520 -2.4055 -0.3666 10 6 0.2210 -2.3681 -1.2070 11 6 -0.4089 -3.5263 -1.5574 12 6 0.0537 -4.7539 -1.0933 13 9 -0.5820 -5.8916 -1.4494 14 6 1.1672 -4.8130 -0.2652 15 6 1.8239 -3.6513 0.0973 16 8 2.9128 -3.7171 0.9122 17 6 2.6667 -4.1231 2.2602 18 6 2.6329 -5.6397 2.3680 19 6 1.4741 -6.2487 1.5941 20 8 1.6231 -6.0160 0.1922 21 1 -0.4850 0.8401 -0.0004 22 1 -0.1471 -1.4214 -1.5743 23 1 -1.2747 -3.4902 -2.2019 24 1 1.7089 -3.7186 2.5877 25 1 3.4577 -3.7352 2.9020 26 1 2.5409 -5.9172 3.4181 27 1 3.5680 -6.0424 1.9788 28 1 0.5405 -5.8010 1.9347 29 1 1.4445 -7.3226 1.7784 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258084440.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:57 Heat of formation + Delta-G solvation = -108.026192 kcal Electronic energy + Delta-G solvation = -17192.403162 eV Core-core repulsion = 14188.222865 eV Total energy + Delta-G solvation = -3004.180298 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -47.48586 -39.56669 -36.70003 -36.14863 -33.66206 -32.11310 -29.51791 -27.96980 -26.06333 -24.93237 -21.62555 -21.05164 -20.63990 -17.99666 -17.04408 -16.47385 -15.93096 -15.20757 -14.88537 -14.65879 -14.46043 -14.10688 -13.54077 -13.26662 -13.22647 -12.53402 -12.27357 -12.15009 -11.56597 -11.38965 -11.11692 -10.86089 -10.57385 -10.30539 -10.07237 -9.92066 -9.60726 -9.30426 -8.90492 -7.48241 -7.40122 -7.01046 -4.52988 2.40358 2.41735 2.96979 2.98848 3.05060 3.77796 4.18928 4.36169 4.71322 5.16725 5.26434 5.37725 5.58742 5.71314 5.84281 5.98317 6.03908 6.17250 6.23084 6.43667 6.55189 6.69726 6.89244 6.97425 7.27948 7.62852 7.65438 7.73536 8.17836 8.19129 8.46881 8.60277 8.90858 9.92305 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.027198 B = 0.009795 C = 0.007588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.225590 B = 2857.929511 C = 3689.212514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.072 3.928 3 Si 0.917 3.083 4 H -0.260 1.260 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.430 4.430 8 H 0.090 0.910 9 C 0.109 3.891 10 C -0.139 4.139 11 C -0.118 4.118 12 C -0.048 4.048 13 F -0.163 7.163 14 C 0.068 3.932 15 C -0.040 4.040 16 O -0.305 6.305 17 C 0.058 3.942 18 C -0.181 4.181 19 C 0.064 3.936 20 O -0.323 6.323 21 H 0.287 0.713 22 H 0.134 0.866 23 H 0.109 0.891 24 H 0.050 0.950 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.051 0.949 29 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.155 -2.368 3.587 4.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.147 4.147 3 Si 0.740 3.260 4 H -0.184 1.184 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.458 4.458 8 H 0.108 0.892 9 C 0.105 3.895 10 C -0.158 4.158 11 C -0.138 4.138 12 C -0.068 4.068 13 F -0.142 7.142 14 C 0.024 3.976 15 C -0.086 4.086 16 O -0.221 6.221 17 C -0.018 4.018 18 C -0.219 4.219 19 C -0.012 4.012 20 O -0.240 6.240 21 H 0.098 0.902 22 H 0.151 0.849 23 H 0.127 0.873 24 H 0.068 0.932 25 H 0.103 0.897 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.069 0.931 29 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.194 -2.343 3.450 4.338 hybrid contribution -0.114 0.516 0.370 0.645 sum 1.080 -1.827 3.820 4.370 Atomic orbital electron populations 1.69822 1.07733 1.30110 1.33146 1.26057 0.94841 1.01860 0.91964 0.86208 0.80082 0.79276 0.80390 1.18446 1.20155 1.18721 1.19550 0.98519 0.90319 1.37451 0.89167 1.17593 0.90756 0.90836 0.90278 1.20914 0.98654 0.96915 0.99349 1.20415 1.00575 0.91111 1.01660 1.17128 0.96513 0.81919 1.11256 1.91288 1.81621 1.49720 1.91608 1.18816 0.94327 0.84672 0.99804 1.18716 0.95705 0.91547 1.02601 1.86257 1.29288 1.87418 1.19104 1.22431 1.01464 0.92758 0.85143 1.22451 1.00763 0.98219 1.00425 1.22436 0.97217 1.00203 0.81307 1.86288 1.81163 1.33785 1.22780 0.90242 0.84863 0.87268 0.93165 0.89663 0.90646 0.90730 0.93098 0.89310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.74 10.97 55.55 0.61 -18.13 15 2 C 0.07 1.70 5.14 -17.33 -0.09 1.61 15 3 Si 0.92 17.57 29.59 -169.99 -5.03 12.54 15 4 H -0.26 -4.98 7.11 56.52 0.40 -4.58 15 5 H -0.28 -5.13 7.11 56.52 0.40 -4.73 15 6 H -0.26 -5.01 7.11 56.52 0.40 -4.61 15 7 C -0.43 -10.92 8.73 -37.87 -0.33 -11.25 15 8 H 0.09 2.27 7.67 -52.49 -0.40 1.87 15 9 C 0.11 2.83 5.58 -106.70 -0.60 2.24 15 10 C -0.14 -3.45 8.64 -39.21 -0.34 -3.79 15 11 C -0.12 -2.78 9.94 -39.90 -0.40 -3.17 15 12 C -0.05 -1.17 7.33 -39.00 -0.29 -1.45 15 13 F -0.16 -3.88 17.12 2.25 0.04 -3.84 15 14 C 0.07 1.68 5.73 -39.32 -0.23 1.46 15 15 C -0.04 -1.02 5.77 -38.49 -0.22 -1.25 15 16 O -0.30 -7.21 9.46 -35.89 -0.34 -7.55 15 17 C 0.06 1.09 6.52 36.69 0.24 1.33 15 18 C -0.18 -2.90 5.93 -27.67 -0.16 -3.06 15 19 C 0.06 1.14 6.51 36.69 0.24 1.38 15 20 O -0.32 -7.39 10.03 -37.09 -0.37 -7.76 15 21 H 0.29 6.19 8.30 -40.82 -0.34 5.85 15 22 H 0.13 3.29 6.19 -52.49 -0.32 2.96 15 23 H 0.11 2.26 8.06 -52.49 -0.42 1.84 15 24 H 0.05 0.98 7.94 -51.93 -0.41 0.56 15 25 H 0.09 1.37 8.14 -51.93 -0.42 0.94 15 26 H 0.08 0.94 8.14 -51.93 -0.42 0.52 15 27 H 0.07 1.20 8.14 -51.93 -0.42 0.78 15 28 H 0.05 0.92 7.93 -51.93 -0.41 0.50 15 29 H 0.09 1.30 8.14 -51.93 -0.42 0.88 15 LS Contribution 252.98 15.07 3.81 3.81 Total: -1.00 -27.85 252.98 -6.25 -34.11 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -2.80 Total: 2.80 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -2.17 Total: -15.97 kcal Atomic # 7 Polarization: -18.74 SS G_CDS: 0.61 Total: -18.13 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.71 Total: -15.32 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.04 Total: -3.84 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.03 Total: 12.54 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -27.85 -6.25 -34.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258084440.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.921 kcal (2) G-P(sol) polarization free energy of solvation -27.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds