Wall clock time and date at job start Mon Mar 30 2020 05:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86796 * 119.99921 * 2 1 4 4 H 1.48499 * 109.47512 * 239.99876 * 3 2 1 5 5 H 1.48504 * 109.47246 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47306 * 119.99931 * 3 2 1 7 7 C 1.39890 * 120.00084 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99924 * 197.24004 * 7 2 1 9 9 C 1.41118 * 120.00031 * 17.51044 * 7 2 1 10 10 C 1.40953 * 120.39603 * 24.92670 * 9 7 2 11 11 C 1.36418 * 120.07238 * 180.02562 * 10 9 7 12 12 C 1.39161 * 120.65279 * 359.97438 * 11 10 9 13 13 F 1.35103 * 119.90427 * 179.97438 * 12 11 10 14 14 C 1.38888 * 120.19261 * 359.97185 * 12 11 10 15 15 C 1.38283 * 120.08332 * 359.74511 * 14 12 11 16 16 O 1.36165 * 119.74222 * 179.84213 * 15 14 12 17 17 C 1.42927 * 116.12959 * 291.97515 * 16 15 14 18 18 C 1.52076 * 110.73013 * 84.31954 * 17 16 15 19 19 C 1.52075 * 112.35036 * 295.29210 * 18 17 16 20 20 O 1.36533 * 120.32455 * 179.97438 * 14 12 11 21 21 H 0.96999 * 119.99817 * 0.02562 * 1 2 3 22 22 H 1.08001 * 119.96396 * 0.05117 * 10 9 7 23 23 H 1.07995 * 119.67477 * 180.02562 * 11 10 9 24 24 H 1.09001 * 109.22682 * 324.00065 * 17 16 15 25 25 H 1.08997 * 109.22583 * 204.64250 * 17 16 15 26 26 H 1.09002 * 108.90783 * 174.55560 * 18 17 16 27 27 H 1.09000 * 108.90785 * 56.03484 * 18 17 16 28 28 H 1.08998 * 109.21828 * 304.41440 * 19 18 17 29 29 H 1.08997 * 109.22164 * 185.07120 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.0968 1.6965 -1.2124 5 1 1.2780 2.7465 -0.0006 6 1 3.0967 1.6964 1.2125 7 6 2.0085 -1.2115 0.0005 8 1 3.0521 -1.2323 0.2778 9 6 1.3520 -2.4055 -0.3666 10 6 0.2210 -2.3681 -1.2070 11 6 -0.4089 -3.5263 -1.5574 12 6 0.0537 -4.7539 -1.0933 13 9 -0.5820 -5.8916 -1.4494 14 6 1.1672 -4.8130 -0.2652 15 6 1.8239 -3.6513 0.0973 16 8 2.9128 -3.7171 0.9122 17 6 2.6667 -4.1231 2.2602 18 6 2.6329 -5.6397 2.3680 19 6 1.4741 -6.2487 1.5941 20 8 1.6231 -6.0160 0.1922 21 1 -0.4850 0.8401 -0.0004 22 1 -0.1471 -1.4214 -1.5743 23 1 -1.2747 -3.4902 -2.2019 24 1 1.7089 -3.7186 2.5877 25 1 3.4577 -3.7352 2.9020 26 1 2.5409 -5.9172 3.4181 27 1 3.5680 -6.0424 1.9788 28 1 0.5405 -5.8010 1.9347 29 1 1.4445 -7.3226 1.7784 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258084440.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:57 Heat of formation + Delta-G solvation = -123.779321 kcal Electronic energy + Delta-G solvation = -17193.086269 eV Core-core repulsion = 14188.222865 eV Total energy + Delta-G solvation = -3004.863404 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.36557 -41.28925 -38.45558 -37.89505 -35.46854 -33.63464 -31.37664 -29.78013 -27.68300 -26.72139 -23.33098 -22.85503 -22.25806 -19.75520 -18.84903 -18.21514 -17.72475 -16.92490 -16.61019 -16.41283 -16.07883 -15.85656 -15.20586 -14.94987 -14.85544 -14.08959 -14.00885 -13.85819 -13.20777 -13.01567 -12.76710 -12.55039 -12.15713 -11.99850 -11.71030 -11.59476 -11.22394 -11.04349 -10.62477 -9.36295 -9.26291 -8.79299 -6.43693 0.55619 0.58156 1.40299 1.48782 1.53717 2.17699 2.42578 2.71707 2.97958 3.46042 3.79683 3.89537 3.93029 4.25912 4.33798 4.49295 4.53855 4.66149 4.76683 4.78220 4.92505 5.05385 5.11572 5.15620 5.44183 5.74755 5.76214 5.91852 6.30968 6.42688 6.58800 6.73646 7.09132 8.16816 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.027198 B = 0.009795 C = 0.007588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.225590 B = 2857.929511 C = 3689.212514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.039 3.961 3 Si 0.988 3.012 4 H -0.260 1.260 5 H -0.262 1.262 6 H -0.259 1.259 7 C -0.457 4.457 8 H 0.082 0.918 9 C 0.083 3.917 10 C -0.155 4.155 11 C -0.113 4.113 12 C -0.068 4.068 13 F -0.161 7.161 14 C 0.065 3.935 15 C -0.054 4.054 16 O -0.327 6.327 17 C 0.047 3.953 18 C -0.172 4.172 19 C 0.052 3.948 20 O -0.343 6.343 21 H 0.298 0.702 22 H 0.130 0.870 23 H 0.135 0.865 24 H 0.036 0.964 25 H 0.114 0.886 26 H 0.121 0.879 27 H 0.076 0.924 28 H 0.044 0.956 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.596 -2.093 4.585 5.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.179 4.179 3 Si 0.808 3.192 4 H -0.184 1.184 5 H -0.186 1.186 6 H -0.184 1.184 7 C -0.484 4.484 8 H 0.100 0.900 9 C 0.080 3.920 10 C -0.174 4.174 11 C -0.132 4.132 12 C -0.089 4.089 13 F -0.141 7.141 14 C 0.020 3.980 15 C -0.099 4.099 16 O -0.244 6.244 17 C -0.027 4.027 18 C -0.209 4.209 19 C -0.023 4.023 20 O -0.260 6.260 21 H 0.109 0.891 22 H 0.148 0.852 23 H 0.152 0.848 24 H 0.055 0.945 25 H 0.131 0.869 26 H 0.139 0.861 27 H 0.095 0.905 28 H 0.063 0.937 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.620 -2.093 4.460 5.186 hybrid contribution -0.249 0.360 0.152 0.463 sum 1.372 -1.734 4.612 5.114 Atomic orbital electron populations 1.69834 1.08958 1.31722 1.32391 1.26852 0.95572 1.04629 0.90842 0.85146 0.78823 0.74980 0.80266 1.18378 1.18586 1.18365 1.19703 0.98397 0.91431 1.38872 0.89974 1.17967 0.91571 0.91645 0.90860 1.20901 0.99135 0.97218 1.00189 1.20616 1.00924 0.90396 1.01289 1.17308 0.97202 0.82324 1.12040 1.91278 1.81578 1.49569 1.91646 1.18941 0.94155 0.85251 0.99640 1.18855 0.96044 0.91645 1.03397 1.86163 1.29206 1.87996 1.21060 1.22769 1.01871 0.95045 0.83058 1.22396 0.99941 0.95699 1.02863 1.22856 0.97796 1.02667 0.78934 1.86225 1.81212 1.32804 1.25766 0.89110 0.85193 0.84756 0.94534 0.86851 0.86081 0.90502 0.93748 0.85591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.36 10.97 21.82 0.24 -38.12 15 2 C 0.04 1.82 5.14 85.23 0.44 2.26 15 3 Si 0.99 35.29 29.59 68.60 2.03 37.32 15 4 H -0.26 -9.20 7.11 99.48 0.71 -8.50 15 5 H -0.26 -8.67 7.11 99.48 0.71 -7.96 15 6 H -0.26 -9.08 7.11 99.48 0.71 -8.37 15 7 C -0.46 -23.59 8.73 23.38 0.20 -23.39 15 8 H 0.08 4.24 7.67 -2.91 -0.02 4.22 15 9 C 0.08 4.43 5.58 -21.21 -0.12 4.31 15 10 C -0.16 -7.85 8.64 22.51 0.19 -7.66 15 11 C -0.11 -5.36 9.94 22.07 0.22 -5.14 15 12 C -0.07 -3.37 7.33 22.65 0.17 -3.21 15 13 F -0.16 -7.64 17.12 44.97 0.77 -6.87 15 14 C 0.06 3.23 5.73 22.44 0.13 3.36 15 15 C -0.05 -2.80 5.77 22.98 0.13 -2.67 15 16 O -0.33 -15.63 9.46 -80.49 -0.76 -16.39 15 17 C 0.05 1.73 6.52 71.68 0.47 2.20 15 18 C -0.17 -5.05 5.93 29.98 0.18 -4.88 15 19 C 0.05 1.75 6.51 71.68 0.47 2.22 15 20 O -0.34 -15.50 10.03 -84.76 -0.85 -16.35 15 21 H 0.30 12.62 8.30 -92.71 -0.77 11.85 15 22 H 0.13 6.54 6.19 -2.91 -0.02 6.52 15 23 H 0.13 5.49 8.06 -2.91 -0.02 5.47 15 24 H 0.04 1.41 7.94 -2.39 -0.02 1.39 15 25 H 0.11 3.42 8.14 -2.39 -0.02 3.40 15 26 H 0.12 2.50 8.14 -2.39 -0.02 2.48 15 27 H 0.08 2.27 8.14 -2.39 -0.02 2.25 15 28 H 0.04 1.55 7.93 -2.39 -0.02 1.53 15 29 H 0.13 3.29 8.14 -2.39 -0.02 3.27 15 Total: -1.00 -60.53 252.98 5.08 -55.45 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 1.17 Total: 17.55 kcal Atomic # 6 Polarization: -35.06 SS G_CDS: 2.48 Total: -32.59 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.24 Total: -38.12 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -1.61 Total: -32.74 kcal Atomic # 9 Polarization: -7.64 SS G_CDS: 0.77 Total: -6.87 kcal Atomic # 14 Polarization: 35.29 SS G_CDS: 2.03 Total: 37.32 kcal Total: -60.53 5.08 -55.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258084440.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.330 kcal (2) G-P(sol) polarization free energy of solvation -60.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds