Wall clock time and date at job start Mon Mar 30 2020 06:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35716 * 116.99880 * 2 1 4 4 C 1.38130 * 120.15500 * 90.00248 * 3 2 1 5 5 C 1.50703 * 119.79017 * 359.97438 * 4 3 2 6 6 C 1.38634 * 120.41673 * 180.02562 * 4 3 2 7 7 C 1.38269 * 120.72323 * 359.97438 * 6 4 3 8 8 C 1.38664 * 120.28350 * 0.27812 * 7 6 4 9 9 S 1.76195 * 120.20900 * 179.75046 * 8 7 6 10 10 C 1.80999 * 100.00257 * 359.97438 * 9 8 7 11 11 C 1.41274 * 120.15590 * 270.02193 * 3 2 1 12 12 C 1.40843 * 120.34727 * 359.96307 * 11 3 2 13 13 H 1.07992 * 120.00384 * 141.42963 * 12 11 3 14 14 C 1.39892 * 119.99692 * 321.43184 * 12 11 3 15 15 N 1.30946 * 119.99670 * 338.40231 * 14 12 11 16 16 Si 1.86794 * 120.00228 * 158.40389 * 14 12 11 17 17 H 1.48499 * 109.46850 * 359.97438 * 16 14 12 18 18 H 1.48507 * 109.47307 * 119.99691 * 16 14 12 19 19 H 1.48502 * 109.47214 * 239.99701 * 16 14 12 20 20 H 1.09001 * 109.47535 * 59.99643 * 1 2 3 21 21 H 1.09002 * 109.47066 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47069 * 299.99468 * 1 2 3 23 23 H 1.09001 * 109.47287 * 270.02275 * 5 4 3 24 24 H 1.09004 * 109.47224 * 30.02087 * 5 4 3 25 25 H 1.09006 * 109.47370 * 150.01684 * 5 4 3 26 26 H 1.08004 * 119.64535 * 179.97438 * 6 4 3 27 27 H 1.07996 * 119.85673 * 179.97438 * 7 6 4 28 28 H 1.08998 * 109.47839 * 180.02562 * 10 9 8 29 29 H 1.09002 * 109.47072 * 300.00500 * 10 9 8 30 30 H 1.09002 * 109.47363 * 60.00154 * 10 9 8 31 31 H 0.97001 * 119.99497 * 178.86102 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 2.3601 1.8275 1.1944 5 6 2.0170 1.1552 2.4988 6 6 2.9890 3.0630 1.2007 7 6 3.3121 3.6972 0.0153 8 6 3.0048 3.1058 -1.2006 9 16 3.4115 3.9188 -2.7099 10 6 4.1801 5.4229 -2.0596 11 6 2.3668 1.8418 -1.2215 12 6 2.0523 1.2238 -2.4474 13 1 1.7006 1.8184 -3.2774 14 6 2.1955 -0.1605 -2.5898 15 7 2.9902 -0.8225 -1.7868 16 14 1.2529 -1.0645 -3.9253 17 1 0.4294 -0.0956 -4.6922 18 1 2.2114 -1.7340 -4.8410 19 1 0.3683 -2.0828 -3.3041 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.0186 1.4597 2.8129 24 1 2.0425 0.0734 2.3677 25 1 2.7418 1.4462 3.2592 26 1 3.2292 3.5353 2.1418 27 1 3.8015 4.6597 0.0366 28 1 4.4979 6.0560 -2.8880 29 1 3.4592 5.9630 -1.4457 30 1 5.0456 5.1558 -1.4533 31 1 3.0768 -1.7846 -1.8749 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258136623.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:23 Heat of formation + Delta-G solvation = -21.619487 kcal Electronic energy + Delta-G solvation = -15225.137559 eV Core-core repulsion = 12790.917314 eV Total energy + Delta-G solvation = -2434.220246 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.51706 -35.67242 -33.70998 -31.43614 -29.79482 -28.09508 -26.67128 -25.30624 -24.73612 -20.88929 -20.11153 -17.37457 -16.62476 -15.29727 -14.87857 -14.63008 -14.36755 -14.13699 -13.17571 -13.11967 -12.87960 -12.55131 -12.49609 -11.93269 -11.74113 -11.44608 -11.25886 -11.10169 -10.87046 -10.74164 -10.37968 -10.21232 -9.93178 -9.25093 -8.99440 -8.43157 -8.17427 -7.21541 -6.74686 -6.25477 -4.31121 2.54564 2.72234 2.75660 3.13161 3.15880 3.18688 3.61365 4.01817 4.52792 5.08656 5.48109 5.61134 5.63627 5.89384 6.08482 6.12840 6.13245 6.24059 6.29811 6.36393 6.44244 6.45981 6.65337 7.05785 7.20585 7.26307 7.50717 7.64198 7.92437 7.98503 8.35488 8.64101 8.86417 9.20829 10.28351 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.019197 B = 0.013407 C = 0.008539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.208826 B = 2087.920709 C = 3278.281861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.297 6.297 3 C 0.043 3.957 4 C -0.087 4.087 5 C -0.100 4.100 6 C -0.215 4.215 7 C -0.100 4.100 8 C -0.187 4.187 9 S -0.117 6.117 10 C -0.155 4.155 11 C 0.131 3.869 12 C -0.465 4.465 13 H 0.084 0.916 14 C 0.097 3.903 15 N -0.748 5.748 16 Si 0.891 3.109 17 H -0.260 1.260 18 H -0.275 1.275 19 H -0.271 1.271 20 H 0.039 0.961 21 H 0.068 0.932 22 H 0.024 0.976 23 H 0.050 0.950 24 H 0.063 0.937 25 H 0.050 0.950 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.904 3.445 2.064 4.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.212 6.212 3 C -0.004 4.004 4 C -0.090 4.090 5 C -0.157 4.157 6 C -0.236 4.236 7 C -0.123 4.123 8 C -0.300 4.300 9 S 0.123 5.877 10 C -0.324 4.324 11 C 0.125 3.875 12 C -0.494 4.494 13 H 0.102 0.898 14 C -0.126 4.126 15 N -0.370 5.370 16 Si 0.715 3.285 17 H -0.184 1.184 18 H -0.200 1.200 19 H -0.197 1.197 20 H 0.058 0.942 21 H 0.087 0.913 22 H 0.042 0.958 23 H 0.069 0.931 24 H 0.082 0.918 25 H 0.069 0.931 26 H 0.113 0.887 27 H 0.115 0.885 28 H 0.106 0.894 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.819 2.794 0.882 3.448 hybrid contribution -0.314 0.043 0.841 0.898 sum -2.133 2.836 1.722 3.945 Atomic orbital electron populations 1.22695 0.83613 1.00483 0.99174 1.86096 1.16040 1.25310 1.93799 1.18257 1.03055 0.88252 0.90790 1.19747 1.00577 0.94648 0.93984 1.20557 0.99743 1.00676 0.94707 1.19938 1.10802 0.96968 0.95869 1.20609 1.01191 0.98370 0.92159 1.21492 1.12234 1.02805 0.93424 1.85244 1.74574 1.17000 1.10922 1.23556 1.03503 1.00703 1.04646 1.17404 0.88573 0.88377 0.93187 1.19182 1.40262 0.92270 0.97687 0.89830 1.25633 0.93229 0.97431 0.96314 1.69791 1.25198 1.09469 1.32546 0.86537 0.80650 0.79941 0.81348 1.18380 1.20028 1.19654 0.94235 0.91341 0.95768 0.93128 0.91820 0.93080 0.88729 0.88549 0.89416 0.91027 0.90887 0.90888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 11.13 101.05 1.12 1.85 16 2 O -0.30 -7.27 6.36 -18.85 -0.12 -7.39 16 3 C 0.04 1.10 5.18 -38.47 -0.20 0.90 16 4 C -0.09 -2.01 5.89 -104.51 -0.62 -2.63 16 5 C -0.10 -1.90 9.77 36.01 0.35 -1.55 16 6 C -0.21 -4.74 9.67 -39.42 -0.38 -5.12 16 7 C -0.10 -2.23 9.17 -39.41 -0.36 -2.59 16 8 C -0.19 -4.58 6.18 -38.14 -0.24 -4.82 16 9 S -0.12 -2.51 21.46 -107.50 -2.31 -4.82 16 10 C -0.16 -2.53 8.98 101.05 0.91 -1.62 16 11 C 0.13 3.48 5.38 -106.48 -0.57 2.91 16 12 C -0.47 -12.37 8.04 -37.98 -0.31 -12.67 16 13 H 0.08 2.22 7.47 -52.49 -0.39 1.83 16 14 C 0.10 2.47 4.35 -17.31 -0.08 2.39 16 15 N -0.75 -19.82 11.34 55.55 0.63 -19.19 16 16 Si 0.89 19.07 29.61 -169.99 -5.03 14.04 16 17 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 18 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 19 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 20 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 21 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 22 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.06 1.24 7.51 -51.93 -0.39 0.85 16 25 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 26 H 0.09 1.83 8.06 -52.48 -0.42 1.40 16 27 H 0.10 1.88 5.48 -52.49 -0.29 1.59 16 28 H 0.09 1.20 8.14 -51.92 -0.42 0.77 16 29 H 0.07 1.11 7.54 -51.91 -0.39 0.72 16 30 H 0.07 1.16 7.54 -51.91 -0.39 0.77 16 31 H 0.28 6.82 8.30 -40.82 -0.34 6.49 16 LS Contribution 274.51 15.07 4.14 4.14 Total: -1.00 -28.42 274.51 -7.00 -35.42 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -3.94 Total: 0.74 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: -0.36 Total: -22.95 kcal Atomic # 7 Polarization: -19.82 SS G_CDS: 0.63 Total: -19.19 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -0.12 Total: -7.39 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Atomic # 16 Polarization: -2.51 SS G_CDS: -2.31 Total: -4.82 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -28.42 -7.00 -35.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258136623.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.802 kcal (2) G-P(sol) polarization free energy of solvation -28.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds