Wall clock time and date at job start Mon Mar 30 2020 06:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35716 * 116.99880 * 2 1 4 4 C 1.38130 * 120.15500 * 90.00248 * 3 2 1 5 5 C 1.50703 * 119.79017 * 359.97438 * 4 3 2 6 6 C 1.38634 * 120.41673 * 180.02562 * 4 3 2 7 7 C 1.38269 * 120.72323 * 359.97438 * 6 4 3 8 8 C 1.38664 * 120.28350 * 0.27812 * 7 6 4 9 9 S 1.76195 * 120.20900 * 179.75046 * 8 7 6 10 10 C 1.80999 * 100.00257 * 359.97438 * 9 8 7 11 11 C 1.41274 * 120.15590 * 270.02193 * 3 2 1 12 12 C 1.40843 * 120.34727 * 359.96307 * 11 3 2 13 13 H 1.07992 * 120.00384 * 141.42963 * 12 11 3 14 14 C 1.39892 * 119.99692 * 321.43184 * 12 11 3 15 15 N 1.30946 * 119.99670 * 338.40231 * 14 12 11 16 16 Si 1.86794 * 120.00228 * 158.40389 * 14 12 11 17 17 H 1.48499 * 109.46850 * 359.97438 * 16 14 12 18 18 H 1.48507 * 109.47307 * 119.99691 * 16 14 12 19 19 H 1.48502 * 109.47214 * 239.99701 * 16 14 12 20 20 H 1.09001 * 109.47535 * 59.99643 * 1 2 3 21 21 H 1.09002 * 109.47066 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47069 * 299.99468 * 1 2 3 23 23 H 1.09001 * 109.47287 * 270.02275 * 5 4 3 24 24 H 1.09004 * 109.47224 * 30.02087 * 5 4 3 25 25 H 1.09006 * 109.47370 * 150.01684 * 5 4 3 26 26 H 1.08004 * 119.64535 * 179.97438 * 6 4 3 27 27 H 1.07996 * 119.85673 * 179.97438 * 7 6 4 28 28 H 1.08998 * 109.47839 * 180.02562 * 10 9 8 29 29 H 1.09002 * 109.47072 * 300.00500 * 10 9 8 30 30 H 1.09002 * 109.47363 * 60.00154 * 10 9 8 31 31 H 0.97001 * 119.99497 * 178.86102 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 2.3601 1.8275 1.1944 5 6 2.0170 1.1552 2.4988 6 6 2.9890 3.0630 1.2007 7 6 3.3121 3.6972 0.0153 8 6 3.0048 3.1058 -1.2006 9 16 3.4115 3.9188 -2.7099 10 6 4.1801 5.4229 -2.0596 11 6 2.3668 1.8418 -1.2215 12 6 2.0523 1.2238 -2.4474 13 1 1.7006 1.8184 -3.2774 14 6 2.1955 -0.1605 -2.5898 15 7 2.9902 -0.8225 -1.7868 16 14 1.2529 -1.0645 -3.9253 17 1 0.4294 -0.0956 -4.6922 18 1 2.2114 -1.7340 -4.8410 19 1 0.3683 -2.0828 -3.3041 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.0186 1.4597 2.8129 24 1 2.0425 0.0734 2.3677 25 1 2.7418 1.4462 3.2592 26 1 3.2292 3.5353 2.1418 27 1 3.8015 4.6597 0.0366 28 1 4.4979 6.0560 -2.8880 29 1 3.4592 5.9630 -1.4457 30 1 5.0456 5.1558 -1.4533 31 1 3.0768 -1.7846 -1.8749 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258136623.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:23 Heat of formation + Delta-G solvation = -36.818458 kcal Electronic energy + Delta-G solvation = -15225.796636 eV Core-core repulsion = 12790.917314 eV Total energy + Delta-G solvation = -2434.879322 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.28603 -37.43064 -35.54787 -33.14571 -31.52230 -29.51922 -28.34044 -27.03672 -26.48476 -22.68450 -21.86048 -19.22227 -18.38205 -17.05308 -16.65880 -16.35337 -16.02235 -15.82520 -14.83814 -14.54440 -14.47563 -14.12676 -14.04620 -13.58586 -13.30412 -13.15760 -12.90446 -12.74577 -12.53744 -12.40018 -12.13126 -11.91600 -11.65136 -10.88518 -10.83598 -10.19098 -9.89825 -9.04375 -8.60102 -7.98722 -6.22963 0.76088 0.95386 1.18679 1.37517 1.44581 1.49982 1.98330 2.25345 2.72457 3.29469 3.69033 4.27221 4.36889 4.40427 4.48766 4.55543 4.60837 4.74219 4.80458 4.82794 4.87782 4.91654 5.10784 5.22496 5.44157 5.49746 5.71444 5.83359 6.10458 6.26201 6.46967 6.77654 6.97397 7.41534 8.45155 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.019197 B = 0.013407 C = 0.008539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.208826 B = 2087.920709 C = 3278.281861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.315 6.315 3 C 0.024 3.976 4 C -0.105 4.105 5 C -0.093 4.093 6 C -0.209 4.209 7 C -0.109 4.109 8 C -0.204 4.204 9 S -0.162 6.162 10 C -0.138 4.138 11 C 0.093 3.907 12 C -0.493 4.493 13 H 0.068 0.932 14 C 0.066 3.934 15 N -0.788 5.788 16 Si 0.950 3.050 17 H -0.263 1.263 18 H -0.269 1.269 19 H -0.261 1.261 20 H 0.025 0.975 21 H 0.091 0.909 22 H 0.042 0.958 23 H 0.070 0.930 24 H 0.052 0.948 25 H 0.074 0.926 26 H 0.128 0.872 27 H 0.127 0.873 28 H 0.118 0.882 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.920 4.428 3.181 5.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.231 6.231 3 C -0.023 4.023 4 C -0.107 4.107 5 C -0.149 4.149 6 C -0.230 4.230 7 C -0.132 4.132 8 C -0.316 4.316 9 S 0.077 5.923 10 C -0.306 4.306 11 C 0.087 3.913 12 C -0.523 4.523 13 H 0.086 0.914 14 C -0.154 4.154 15 N -0.411 5.411 16 Si 0.772 3.228 17 H -0.186 1.186 18 H -0.194 1.194 19 H -0.185 1.185 20 H 0.044 0.956 21 H 0.109 0.891 22 H 0.060 0.940 23 H 0.088 0.912 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.146 0.854 27 H 0.145 0.855 28 H 0.136 0.864 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.840 3.784 2.005 4.661 hybrid contribution -0.262 -0.089 0.594 0.655 sum -2.102 3.695 2.598 4.982 Atomic orbital electron populations 1.22834 0.81870 1.02045 0.99334 1.86027 1.17830 1.25359 1.93920 1.18571 1.03716 0.88578 0.91419 1.20233 1.00286 0.95233 0.94940 1.20542 1.01518 0.99620 0.93243 1.20433 1.08872 0.96462 0.97213 1.21009 1.01038 0.99606 0.91562 1.21862 1.11904 1.02641 0.95234 1.85279 1.75432 1.20228 1.11329 1.23597 1.03331 0.97777 1.05907 1.17844 0.89692 0.89839 0.93903 1.19179 1.42307 0.93070 0.97705 0.91438 1.26233 0.93423 0.97638 0.98072 1.69839 1.26749 1.09785 1.34742 0.85651 0.79498 0.78769 0.78890 1.18642 1.19444 1.18500 0.95646 0.89084 0.93958 0.91158 0.92897 0.90746 0.85379 0.85511 0.86373 0.89792 0.90197 0.90573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.37 11.13 113.37 1.26 2.64 16 2 O -0.32 -15.56 6.36 -90.37 -0.57 -16.13 16 3 C 0.02 1.21 5.18 22.99 0.12 1.33 16 4 C -0.10 -4.68 5.89 -19.79 -0.12 -4.80 16 5 C -0.09 -3.30 9.77 71.24 0.70 -2.60 16 6 C -0.21 -8.70 9.67 22.37 0.22 -8.49 16 7 C -0.11 -4.66 9.17 22.38 0.21 -4.46 16 8 C -0.20 -10.01 6.18 23.20 0.14 -9.86 16 9 S -0.16 -6.95 21.46 -56.49 -1.21 -8.16 16 10 C -0.14 -4.10 8.98 113.37 1.02 -3.08 16 11 C 0.09 5.07 5.38 -21.07 -0.11 4.96 16 12 C -0.49 -27.18 8.04 23.31 0.19 -26.99 16 13 H 0.07 3.79 7.47 -2.91 -0.02 3.76 16 14 C 0.07 3.43 4.35 85.23 0.37 3.80 16 15 N -0.79 -42.82 11.34 21.83 0.25 -42.57 16 16 Si 0.95 39.99 29.61 68.60 2.03 42.02 16 17 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 18 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 19 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 20 H 0.02 1.06 8.14 -2.39 -0.02 1.05 16 21 H 0.09 3.16 8.14 -2.39 -0.02 3.15 16 22 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 24 H 0.05 1.99 7.51 -2.39 -0.02 1.97 16 25 H 0.07 2.27 8.08 -2.38 -0.02 2.25 16 26 H 0.13 4.40 8.06 -2.91 -0.02 4.38 16 27 H 0.13 4.53 5.48 -2.91 -0.02 4.52 16 28 H 0.12 2.82 8.14 -2.40 -0.02 2.80 16 29 H 0.08 2.32 7.54 -2.39 -0.02 2.30 16 30 H 0.08 2.30 7.54 -2.39 -0.02 2.28 16 31 H 0.28 14.17 8.30 -92.71 -0.77 13.40 16 Total: -1.00 -62.69 274.51 5.60 -57.09 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 1.12 Total: 15.31 kcal Atomic # 6 Polarization: -51.55 SS G_CDS: 3.99 Total: -47.56 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 0.25 Total: -42.57 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.57 Total: -16.13 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.02 kcal Atomic # 16 Polarization: -6.95 SS G_CDS: -1.21 Total: -8.16 kcal Total: -62.69 5.60 -57.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258136623.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.271 kcal (2) G-P(sol) polarization free energy of solvation -62.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds