Wall clock time and date at job start Mon Mar 30 2020 05:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99883 * 2 1 4 4 H 1.48499 * 109.47189 * 271.39276 * 3 2 1 5 5 H 1.48499 * 109.47279 * 31.39991 * 3 2 1 6 6 H 1.48506 * 109.46627 * 151.39831 * 3 2 1 7 7 C 1.37881 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00020 * 352.01504 * 7 2 1 9 9 C 1.50693 * 120.00068 * 172.01859 * 7 2 1 10 10 C 1.50710 * 112.99713 * 301.66746 * 9 7 2 11 11 C 1.38238 * 120.00143 * 113.26090 * 10 9 7 12 12 C 1.38221 * 120.00834 * 179.74917 * 11 10 9 13 13 C 1.38260 * 120.02845 * 0.26757 * 12 11 10 14 14 C 1.38196 * 120.01203 * 0.02562 * 13 12 11 15 15 C 1.38329 * 120.00870 * 293.53355 * 10 9 7 16 16 Cl 1.73600 * 120.01254 * 359.97438 * 15 10 9 17 17 C 1.54031 * 113.93252 * 73.60025 * 9 7 2 18 18 O 1.44182 * 85.51860 * 91.66124 * 17 9 7 19 19 C 1.44180 * 93.33639 * 24.19484 * 18 17 9 20 20 H 0.96996 * 119.99990 * 359.97438 * 1 2 3 21 21 H 1.07998 * 119.99703 * 0.02562 * 11 10 9 22 22 H 1.08009 * 119.98323 * 180.24877 * 12 11 10 23 23 H 1.08004 * 119.99119 * 179.97438 * 13 12 11 24 24 H 1.08001 * 120.00380 * 179.97438 * 14 13 12 25 25 H 1.08997 * 113.87380 * 205.80958 * 17 9 7 26 26 H 1.09003 * 113.86201 * 337.51633 * 17 9 7 27 27 H 1.09002 * 113.86314 * 221.65940 * 19 18 17 28 28 H 1.09006 * 113.86128 * 89.95732 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4672 2.0635 -1.3996 5 1 1.4617 2.6439 0.7294 6 1 3.5612 1.4317 0.6703 7 6 2.0046 -1.1941 -0.0005 8 1 1.4724 -2.1249 0.1290 9 6 3.5006 -1.2004 -0.1817 10 6 3.9401 -0.5577 -1.4721 11 6 4.6585 0.6231 -1.4467 12 6 5.0661 1.2099 -2.6299 13 6 4.7509 0.6194 -3.8396 14 6 4.0275 -0.5578 -3.8665 15 6 3.6198 -1.1462 -2.6823 16 17 2.7120 -2.6256 -2.7152 17 6 4.2816 -0.7133 1.0533 18 8 4.3149 -2.1020 1.4394 19 6 4.1538 -2.5696 0.0851 20 1 -0.4850 0.8400 0.0004 21 1 4.9052 1.0847 -0.5020 22 1 5.6309 2.1303 -2.6094 23 1 5.0693 1.0786 -4.7638 24 1 3.7809 -1.0188 -4.8116 25 1 5.2615 -0.2969 0.8196 26 1 3.6976 -0.0829 1.7239 27 1 3.4684 -3.4116 -0.0121 28 1 5.0947 -2.7201 -0.4443 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258537934.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:05 Heat of formation + Delta-G solvation = 19.950736 kcal Electronic energy + Delta-G solvation = -15288.040731 eV Core-core repulsion = 12717.746304 eV Total energy + Delta-G solvation = -2570.294426 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.07648 -38.10096 -35.63482 -33.01948 -31.48141 -30.28421 -27.90075 -25.88533 -24.55983 -22.26251 -21.85980 -18.92939 -17.28587 -16.40755 -15.58688 -15.22700 -15.00712 -14.25762 -14.10255 -13.71985 -13.37080 -12.94220 -12.75873 -11.98491 -11.72708 -11.15994 -11.13389 -10.66746 -10.60031 -10.23730 -10.21001 -9.94948 -9.80171 -9.29358 -8.79450 -8.56532 -8.25092 -7.91470 -6.19540 -4.18932 1.66475 1.77848 2.91892 3.20244 3.25993 3.33785 4.11901 4.32019 4.67572 5.02112 5.21138 5.26955 5.45141 5.57508 5.85264 5.89146 5.99257 6.02250 6.17184 6.29143 6.51181 6.56980 6.71742 6.82837 6.95046 7.06449 7.11209 7.29438 7.55624 8.37294 8.85670 9.40378 10.91421 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.019320 B = 0.015423 C = 0.013593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.896016 B = 1815.091509 C = 2059.337340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.083 3.917 3 Si 0.855 3.145 4 H -0.269 1.269 5 H -0.293 1.293 6 H -0.250 1.250 7 C -0.478 4.478 8 H 0.086 0.914 9 C 0.029 3.971 10 C -0.044 4.044 11 C -0.135 4.135 12 C -0.120 4.120 13 C -0.131 4.131 14 C -0.118 4.118 15 C -0.015 4.015 16 Cl -0.060 7.060 17 C 0.021 3.979 18 O -0.378 6.378 19 C 0.051 3.949 20 H 0.266 0.734 21 H 0.130 0.870 22 H 0.118 0.882 23 H 0.122 0.878 24 H 0.125 0.875 25 H 0.055 0.945 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.456 0.914 -6.097 11.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.121 4.121 3 Si 0.683 3.317 4 H -0.195 1.195 5 H -0.220 1.220 6 H -0.175 1.175 7 C -0.514 4.514 8 H 0.104 0.896 9 C 0.027 3.973 10 C -0.046 4.046 11 C -0.153 4.153 12 C -0.138 4.138 13 C -0.149 4.149 14 C -0.136 4.136 15 C -0.041 4.041 16 Cl -0.030 7.030 17 C -0.056 4.056 18 O -0.297 6.297 19 C -0.026 4.026 20 H 0.076 0.924 21 H 0.148 0.852 22 H 0.137 0.863 23 H 0.140 0.860 24 H 0.143 0.857 25 H 0.073 0.927 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.201 0.752 -5.845 10.926 hybrid contribution 0.182 1.128 -0.284 1.177 sum 9.383 1.879 -6.128 11.363 Atomic orbital electron populations 1.69884 1.06225 1.27149 1.48653 1.24891 0.94589 0.98780 0.93799 0.87428 0.80654 0.84358 0.79269 1.19451 1.21987 1.17467 1.20335 0.86100 0.95300 1.49685 0.89569 1.20629 0.97998 0.91587 0.87048 1.20485 0.93353 0.94406 0.96318 1.21259 0.99273 0.95921 0.98844 1.21074 1.00424 0.99718 0.92607 1.20878 1.00396 0.95922 0.97747 1.20979 0.99502 0.96400 0.96752 1.20638 0.98346 0.91151 0.94014 1.98339 1.73183 1.32775 1.98742 1.24595 0.97847 0.84750 0.98430 1.89540 1.95075 1.19614 1.25486 1.23911 0.97665 0.98324 0.82656 0.92410 0.85208 0.86347 0.86048 0.85693 0.92664 0.89454 0.89543 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.17 13.96 55.43 0.77 -25.40 15 2 C 0.08 2.31 5.43 -17.82 -0.10 2.21 15 3 Si 0.85 20.42 22.82 -169.99 -3.88 16.54 15 4 H -0.27 -6.46 6.84 56.52 0.39 -6.08 15 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 15 6 H -0.25 -5.32 3.67 56.52 0.21 -5.12 15 7 C -0.48 -12.75 7.76 -34.44 -0.27 -13.02 15 8 H 0.09 2.54 8.04 -52.49 -0.42 2.12 15 9 C 0.03 0.65 0.08 -155.73 -0.01 0.63 15 10 C -0.04 -0.93 3.65 -104.58 -0.38 -1.31 15 11 C -0.13 -2.56 5.95 -39.59 -0.24 -2.80 15 12 C -0.12 -1.96 10.05 -39.58 -0.40 -2.36 15 13 C -0.13 -2.02 10.05 -39.59 -0.40 -2.42 15 14 C -0.12 -1.99 9.83 -39.55 -0.39 -2.38 15 15 C -0.01 -0.29 6.20 -39.50 -0.24 -0.54 15 16 Cl -0.06 -1.17 26.14 -51.86 -1.36 -2.53 15 17 C 0.02 0.45 5.91 37.61 0.22 0.67 15 18 O -0.38 -8.57 12.40 -35.23 -0.44 -9.01 15 19 C 0.05 1.07 7.19 37.61 0.27 1.34 15 20 H 0.27 7.46 8.31 -40.82 -0.34 7.12 15 21 H 0.13 2.37 4.77 -52.49 -0.25 2.12 15 22 H 0.12 1.56 8.06 -52.48 -0.42 1.14 15 23 H 0.12 1.45 8.06 -52.48 -0.42 1.03 15 24 H 0.13 1.79 8.06 -52.49 -0.42 1.37 15 25 H 0.06 1.05 6.77 -51.93 -0.35 0.70 15 26 H 0.09 1.94 6.28 -51.93 -0.33 1.62 15 27 H 0.09 1.80 8.03 -51.93 -0.42 1.38 15 28 H 0.06 1.07 8.09 -51.93 -0.42 0.65 15 LS Contribution 239.51 15.07 3.61 3.61 Total: -1.00 -29.44 239.51 -6.02 -35.46 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -2.80 Total: 1.29 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -1.93 Total: -19.96 kcal Atomic # 7 Polarization: -26.17 SS G_CDS: 0.77 Total: -25.40 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: -0.44 Total: -9.01 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -3.88 Total: 16.54 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -1.36 Total: -2.53 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -29.44 -6.02 -35.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258537934.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.414 kcal (2) G-P(sol) polarization free energy of solvation -29.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds