Wall clock time and date at job start Mon Mar 30 2020 05:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99883 * 2 1 4 4 H 1.48499 * 109.47189 * 271.39276 * 3 2 1 5 5 H 1.48499 * 109.47279 * 31.39991 * 3 2 1 6 6 H 1.48506 * 109.46627 * 151.39831 * 3 2 1 7 7 C 1.37881 * 119.99938 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00020 * 352.01504 * 7 2 1 9 9 C 1.50693 * 120.00068 * 172.01859 * 7 2 1 10 10 C 1.50710 * 112.99713 * 301.66746 * 9 7 2 11 11 C 1.38238 * 120.00143 * 113.26090 * 10 9 7 12 12 C 1.38221 * 120.00834 * 179.74917 * 11 10 9 13 13 C 1.38260 * 120.02845 * 0.26757 * 12 11 10 14 14 C 1.38196 * 120.01203 * 0.02562 * 13 12 11 15 15 C 1.38329 * 120.00870 * 293.53355 * 10 9 7 16 16 Cl 1.73600 * 120.01254 * 359.97438 * 15 10 9 17 17 C 1.54031 * 113.93252 * 73.60025 * 9 7 2 18 18 O 1.44182 * 85.51860 * 91.66124 * 17 9 7 19 19 C 1.44180 * 93.33639 * 24.19484 * 18 17 9 20 20 H 0.96996 * 119.99990 * 359.97438 * 1 2 3 21 21 H 1.07998 * 119.99703 * 0.02562 * 11 10 9 22 22 H 1.08009 * 119.98323 * 180.24877 * 12 11 10 23 23 H 1.08004 * 119.99119 * 179.97438 * 13 12 11 24 24 H 1.08001 * 120.00380 * 179.97438 * 14 13 12 25 25 H 1.08997 * 113.87380 * 205.80958 * 17 9 7 26 26 H 1.09003 * 113.86201 * 337.51633 * 17 9 7 27 27 H 1.09002 * 113.86314 * 221.65940 * 19 18 17 28 28 H 1.09006 * 113.86128 * 89.95732 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4672 2.0635 -1.3996 5 1 1.4617 2.6439 0.7294 6 1 3.5612 1.4317 0.6703 7 6 2.0046 -1.1941 -0.0005 8 1 1.4724 -2.1249 0.1290 9 6 3.5006 -1.2004 -0.1817 10 6 3.9401 -0.5577 -1.4721 11 6 4.6585 0.6231 -1.4467 12 6 5.0661 1.2099 -2.6299 13 6 4.7509 0.6194 -3.8396 14 6 4.0275 -0.5578 -3.8665 15 6 3.6198 -1.1462 -2.6823 16 17 2.7120 -2.6256 -2.7152 17 6 4.2816 -0.7133 1.0533 18 8 4.3149 -2.1020 1.4394 19 6 4.1538 -2.5696 0.0851 20 1 -0.4850 0.8400 0.0004 21 1 4.9052 1.0847 -0.5020 22 1 5.6309 2.1303 -2.6094 23 1 5.0693 1.0786 -4.7638 24 1 3.7809 -1.0188 -4.8116 25 1 5.2615 -0.2969 0.8196 26 1 3.6976 -0.0829 1.7239 27 1 3.4684 -3.4116 -0.0121 28 1 5.0947 -2.7201 -0.4443 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258537934.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:05 Heat of formation + Delta-G solvation = 0.145925 kcal Electronic energy + Delta-G solvation = -15288.899532 eV Core-core repulsion = 12717.746304 eV Total energy + Delta-G solvation = -2571.153227 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.70654 -39.54310 -37.10045 -34.94460 -33.16918 -31.62818 -29.53668 -27.55631 -26.51691 -23.67049 -23.22753 -20.70064 -18.91260 -18.07943 -17.35460 -16.76836 -16.59439 -15.88503 -15.67052 -15.24940 -14.96003 -14.47675 -14.43787 -13.70044 -13.18911 -12.87988 -12.52266 -12.40771 -12.24270 -12.01667 -11.80327 -11.63226 -11.40842 -11.13623 -10.70304 -10.35968 -9.64811 -9.37149 -8.29457 -6.32492 0.32001 0.42594 1.31026 1.36659 1.43340 1.48813 2.34810 2.75532 2.89384 3.16688 3.70938 3.96561 4.08724 4.19075 4.36179 4.40173 4.51331 4.57724 4.70236 4.85203 4.88903 5.11858 5.26561 5.37911 5.42002 5.53283 5.57945 5.63473 5.99691 6.28264 6.69615 7.30224 8.85192 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.019320 B = 0.015423 C = 0.013593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.896016 B = 1815.091509 C = 2059.337340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.026 3.974 3 Si 0.912 3.088 4 H -0.264 1.264 5 H -0.306 1.306 6 H -0.211 1.211 7 C -0.470 4.470 8 H 0.038 0.962 9 C 0.021 3.979 10 C -0.071 4.071 11 C -0.149 4.149 12 C -0.115 4.115 13 C -0.118 4.118 14 C -0.120 4.120 15 C -0.040 4.040 16 Cl -0.077 7.077 17 C 0.025 3.975 18 O -0.399 6.399 19 C 0.057 3.943 20 H 0.264 0.736 21 H 0.137 0.863 22 H 0.158 0.842 23 H 0.165 0.835 24 H 0.147 0.853 25 H 0.092 0.908 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.519 2.913 -7.623 14.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.172 4.172 3 Si 0.737 3.263 4 H -0.189 1.189 5 H -0.234 1.234 6 H -0.133 1.133 7 C -0.507 4.507 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.073 4.073 11 C -0.167 4.167 12 C -0.133 4.133 13 C -0.136 4.136 14 C -0.139 4.139 15 C -0.067 4.067 16 Cl -0.048 7.048 17 C -0.052 4.052 18 O -0.318 6.318 19 C -0.019 4.019 20 H 0.073 0.927 21 H 0.155 0.845 22 H 0.176 0.824 23 H 0.183 0.817 24 H 0.165 0.835 25 H 0.110 0.890 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.303 2.729 -7.371 14.599 hybrid contribution -0.738 0.418 0.105 0.855 sum 11.565 3.147 -7.265 14.015 Atomic orbital electron populations 1.70049 1.08266 1.27823 1.51661 1.25689 0.95180 1.02593 0.93756 0.86549 0.80910 0.79206 0.79591 1.18915 1.23368 1.13347 1.20367 0.88652 0.93295 1.48403 0.94393 1.20429 0.95325 0.93220 0.88996 1.20284 0.95879 0.95865 0.95243 1.21446 0.99517 0.95258 1.00507 1.21559 0.99412 1.00621 0.91710 1.21426 0.98174 0.94602 0.99408 1.21353 0.99013 0.96931 0.96567 1.20941 0.99287 0.91306 0.95126 1.98331 1.73783 1.33885 1.98780 1.24655 0.99226 0.84282 0.96995 1.89514 1.95271 1.20454 1.26595 1.23958 0.98586 0.97422 0.81976 0.92738 0.84521 0.82449 0.81741 0.83502 0.89049 0.90517 0.90717 0.89636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.05 13.96 21.45 0.30 -57.75 15 2 C 0.03 1.48 5.43 84.65 0.46 1.94 15 3 Si 0.91 41.72 22.82 68.60 1.57 43.29 15 4 H -0.26 -11.77 6.84 99.48 0.68 -11.09 15 5 H -0.31 -14.47 7.11 99.48 0.71 -13.76 15 6 H -0.21 -8.14 3.67 99.48 0.37 -7.78 15 7 C -0.47 -25.86 7.76 25.60 0.20 -25.66 15 8 H 0.04 2.38 8.04 -2.91 -0.02 2.36 15 9 C 0.02 0.95 0.08 -52.98 0.00 0.95 15 10 C -0.07 -2.83 3.65 -19.84 -0.07 -2.90 15 11 C -0.15 -5.03 5.95 22.27 0.13 -4.90 15 12 C -0.12 -3.08 10.05 22.27 0.22 -2.86 15 13 C -0.12 -2.97 10.05 22.26 0.22 -2.75 15 14 C -0.12 -3.62 9.83 22.29 0.22 -3.40 15 15 C -0.04 -1.52 6.20 22.32 0.14 -1.38 15 16 Cl -0.08 -3.04 26.14 -2.72 -0.07 -3.11 15 17 C 0.02 1.02 5.91 72.27 0.43 1.45 15 18 O -0.40 -17.78 12.40 -148.98 -1.85 -19.63 15 19 C 0.06 2.35 7.19 72.27 0.52 2.87 15 20 H 0.26 15.44 8.31 -92.71 -0.77 14.67 15 21 H 0.14 4.30 4.77 -2.91 -0.01 4.28 15 22 H 0.16 3.00 8.06 -2.91 -0.02 2.97 15 23 H 0.17 2.74 8.06 -2.91 -0.02 2.72 15 24 H 0.15 3.68 8.06 -2.91 -0.02 3.65 15 25 H 0.09 3.10 6.77 -2.39 -0.02 3.09 15 26 H 0.08 3.27 6.28 -2.39 -0.01 3.26 15 27 H 0.07 3.20 8.03 -2.39 -0.02 3.18 15 28 H 0.09 3.04 8.09 -2.38 -0.02 3.02 15 Total: -1.00 -66.48 239.51 3.22 -63.27 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 0.80 Total: 10.57 kcal Atomic # 6 Polarization: -39.10 SS G_CDS: 2.47 Total: -36.64 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: 0.30 Total: -57.75 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -1.85 Total: -19.63 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 1.57 Total: 43.29 kcal Atomic # 17 Polarization: -3.04 SS G_CDS: -0.07 Total: -3.11 kcal Total: -66.48 3.22 -63.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258537934.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.412 kcal (2) G-P(sol) polarization free energy of solvation -66.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds