Wall clock time and date at job start Mon Mar 30 2020 05:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99458 * 2 1 4 4 H 1.48495 * 109.47195 * 90.00202 * 3 2 1 5 5 H 1.48506 * 109.47006 * 209.99680 * 3 2 1 6 6 H 1.48493 * 109.47359 * 329.99709 * 3 2 1 7 7 C 1.37876 * 120.00339 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00293 * 173.70565 * 7 2 1 9 9 C 1.50703 * 119.99922 * 353.70070 * 7 2 1 10 10 C 1.50694 * 113.00064 * 76.95477 * 9 7 2 11 11 C 1.38258 * 119.99312 * 185.57045 * 10 9 7 12 12 C 1.38228 * 120.02564 * 179.76782 * 11 10 9 13 13 C 1.38239 * 120.00819 * 0.50543 * 12 11 10 14 14 C 1.38332 * 119.98933 * 359.74797 * 13 12 11 15 15 Cl 1.73599 * 120.00854 * 179.97438 * 14 13 12 16 16 C 1.38201 * 119.99152 * 5.84389 * 10 9 7 17 17 C 1.54033 * 113.81721 * 304.96525 * 9 7 2 18 18 O 1.44176 * 85.51844 * 223.19766 * 17 9 7 19 19 C 1.44177 * 93.33769 * 24.19614 * 18 17 9 20 20 H 0.96994 * 120.00402 * 354.97505 * 1 2 3 21 21 H 1.07999 * 119.99064 * 359.97438 * 11 10 9 22 22 H 1.07993 * 119.99556 * 180.23335 * 12 11 10 23 23 H 1.08006 * 120.00212 * 179.76662 * 13 12 11 24 24 H 1.08000 * 120.00678 * 359.96189 * 16 10 9 25 25 H 1.09003 * 113.86296 * 337.34517 * 17 9 7 26 26 H 1.09002 * 113.86182 * 109.04625 * 17 9 7 27 27 H 1.09005 * 113.85781 * 221.66076 * 19 18 17 28 28 H 1.08999 * 113.98363 * 89.96926 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4000 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0797 -1.1968 -0.1031 9 6 1.2580 -2.4953 0.1421 10 6 0.5675 -2.9203 -1.1282 11 6 -0.2541 -4.0322 -1.1295 12 6 -0.8916 -4.4199 -2.2931 13 6 -0.6996 -3.7018 -3.4587 14 6 0.1264 -2.5923 -3.4592 15 17 0.3684 -1.6906 -4.9228 16 6 0.7601 -2.2017 -2.2928 17 6 0.3623 -2.5646 1.3933 18 8 0.8790 -3.9013 1.5505 19 6 2.0808 -3.6147 0.8073 20 1 -0.4850 0.8367 0.0736 21 1 -0.4006 -4.5963 -0.2202 22 1 -1.5362 -5.2863 -2.2927 23 1 -1.1948 -4.0070 -4.3688 24 1 1.4050 -1.3353 -2.2925 25 1 0.6605 -1.8802 2.1876 26 1 -0.7049 -2.5272 1.1743 27 1 2.3766 -4.4104 0.1235 28 1 2.9050 -3.2511 1.4209 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258575752.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:44 Heat of formation + Delta-G solvation = 0.596310 kcal Electronic energy + Delta-G solvation = -14904.015476 eV Core-core repulsion = 12332.881779 eV Total energy + Delta-G solvation = -2571.133697 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.85985 -37.78185 -35.76539 -33.19521 -30.77917 -29.86734 -27.84720 -25.37642 -24.57357 -21.99880 -21.63261 -18.77657 -17.01374 -16.07627 -15.13149 -14.80732 -14.71241 -14.33105 -14.13546 -13.56986 -12.90380 -12.81805 -12.18607 -11.83227 -11.56214 -11.13919 -11.00321 -10.77042 -10.73037 -10.63784 -10.49519 -10.07305 -9.45349 -8.91647 -8.71052 -8.49177 -7.98853 -7.78891 -6.21304 -4.30567 1.96065 2.14709 2.78138 3.20892 3.30161 3.31395 4.27934 4.45520 4.86477 5.06695 5.49592 5.59916 5.92922 6.03353 6.09921 6.25991 6.30465 6.38087 6.47459 6.67976 6.78352 6.89679 7.04142 7.16029 7.31735 7.33579 7.55610 7.69681 7.77298 8.14116 8.70363 9.36396 10.85053 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.018611 B = 0.012744 C = 0.008346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.101589 B = 2196.635329 C = 3354.010762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.074 3.926 3 Si 0.887 3.113 4 H -0.279 1.279 5 H -0.272 1.272 6 H -0.285 1.285 7 C -0.526 4.526 8 H 0.065 0.935 9 C 0.048 3.952 10 C -0.006 4.006 11 C -0.124 4.124 12 C -0.126 4.126 13 C -0.135 4.135 14 C -0.047 4.047 15 Cl -0.099 7.099 16 C -0.060 4.060 17 C 0.071 3.929 18 O -0.410 6.410 19 C 0.041 3.959 20 H 0.265 0.735 21 H 0.127 0.873 22 H 0.117 0.883 23 H 0.117 0.883 24 H 0.142 0.858 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.198 -4.762 -3.789 6.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.131 4.131 3 Si 0.714 3.286 4 H -0.205 1.205 5 H -0.196 1.196 6 H -0.211 1.211 7 C -0.564 4.564 8 H 0.083 0.917 9 C 0.048 3.952 10 C -0.007 4.007 11 C -0.142 4.142 12 C -0.144 4.144 13 C -0.153 4.153 14 C -0.073 4.073 15 Cl -0.070 7.070 16 C -0.078 4.078 17 C -0.005 4.005 18 O -0.330 6.330 19 C -0.036 4.036 20 H 0.075 0.925 21 H 0.144 0.856 22 H 0.135 0.865 23 H 0.135 0.865 24 H 0.160 0.840 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.452 -4.776 -3.863 6.160 hybrid contribution 0.337 1.314 -0.238 1.378 sum -0.115 -3.462 -4.100 5.368 Atomic orbital electron populations 1.69968 1.05793 1.27476 1.47472 1.24945 0.94816 0.99025 0.94282 0.86652 0.80099 0.83466 0.78354 1.20452 1.19628 1.21081 1.20907 0.93473 0.89478 1.52541 0.91665 1.19861 0.91966 0.93918 0.89503 1.19939 0.94062 0.91617 0.95068 1.21383 0.97216 0.97523 0.98049 1.20890 1.00887 0.99997 0.92635 1.20760 1.00199 0.95706 0.98668 1.20961 1.02818 0.95878 0.87632 1.98303 1.96294 1.75324 1.37107 1.21170 0.97872 0.99359 0.89434 1.23819 0.98759 0.80843 0.97092 1.89424 1.34043 1.31308 1.78222 1.24035 0.89271 0.96977 0.93341 0.92517 0.85552 0.86503 0.86525 0.84009 0.91083 0.90701 0.91501 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.70 12.39 55.43 0.69 -22.01 15 2 C 0.07 1.86 4.70 -17.82 -0.08 1.77 15 3 Si 0.89 19.82 29.55 -169.99 -5.02 14.80 15 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 5 H -0.27 -6.03 7.11 56.52 0.40 -5.63 15 6 H -0.29 -6.47 7.11 56.52 0.40 -6.07 15 7 C -0.53 -12.96 6.80 -34.44 -0.23 -13.19 15 8 H 0.07 1.60 7.82 -52.49 -0.41 1.19 15 9 C 0.05 1.10 0.83 -155.74 -0.13 0.97 15 10 C -0.01 -0.13 5.11 -104.63 -0.53 -0.67 15 11 C -0.12 -2.45 8.85 -39.58 -0.35 -2.80 15 12 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 15 13 C -0.13 -2.37 9.83 -39.55 -0.39 -2.76 15 14 C -0.05 -0.92 6.32 -39.50 -0.25 -1.17 15 15 Cl -0.10 -1.75 28.96 -51.86 -1.50 -3.25 15 16 C -0.06 -1.32 8.90 -39.55 -0.35 -1.68 15 17 C 0.07 1.62 6.86 37.61 0.26 1.88 15 18 O -0.41 -8.87 10.93 -35.23 -0.39 -9.26 15 19 C 0.04 0.83 8.13 37.61 0.31 1.14 15 20 H 0.26 6.71 8.32 -40.82 -0.34 6.38 15 21 H 0.13 2.45 6.53 -52.49 -0.34 2.11 15 22 H 0.12 1.66 8.06 -52.49 -0.42 1.24 15 23 H 0.12 1.75 8.06 -52.48 -0.42 1.33 15 24 H 0.14 3.38 6.40 -52.49 -0.34 3.05 15 25 H 0.07 1.66 8.09 -51.93 -0.42 1.24 15 26 H 0.07 1.74 7.96 -51.93 -0.41 1.33 15 27 H 0.07 1.26 8.09 -51.93 -0.42 0.84 15 28 H 0.07 1.43 8.09 -51.93 -0.42 1.01 15 LS Contribution 256.94 15.07 3.87 3.87 Total: -1.00 -25.50 256.94 -7.25 -32.75 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -2.74 Total: 2.20 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: -2.16 Total: -19.09 kcal Atomic # 7 Polarization: -22.70 SS G_CDS: 0.69 Total: -22.01 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: -0.39 Total: -9.26 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Atomic # 17 Polarization: -1.75 SS G_CDS: -1.50 Total: -3.25 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -25.50 -7.25 -32.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258575752.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.347 kcal (2) G-P(sol) polarization free energy of solvation -25.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds