Wall clock time and date at job start Mon Mar 30 2020 05:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99458 * 2 1 4 4 H 1.48495 * 109.47195 * 90.00202 * 3 2 1 5 5 H 1.48506 * 109.47006 * 209.99680 * 3 2 1 6 6 H 1.48493 * 109.47359 * 329.99709 * 3 2 1 7 7 C 1.37876 * 120.00339 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00293 * 173.70565 * 7 2 1 9 9 C 1.50703 * 119.99922 * 353.70070 * 7 2 1 10 10 C 1.50694 * 113.00064 * 76.95477 * 9 7 2 11 11 C 1.38258 * 119.99312 * 185.57045 * 10 9 7 12 12 C 1.38228 * 120.02564 * 179.76782 * 11 10 9 13 13 C 1.38239 * 120.00819 * 0.50543 * 12 11 10 14 14 C 1.38332 * 119.98933 * 359.74797 * 13 12 11 15 15 Cl 1.73599 * 120.00854 * 179.97438 * 14 13 12 16 16 C 1.38201 * 119.99152 * 5.84389 * 10 9 7 17 17 C 1.54033 * 113.81721 * 304.96525 * 9 7 2 18 18 O 1.44176 * 85.51844 * 223.19766 * 17 9 7 19 19 C 1.44177 * 93.33769 * 24.19614 * 18 17 9 20 20 H 0.96994 * 120.00402 * 354.97505 * 1 2 3 21 21 H 1.07999 * 119.99064 * 359.97438 * 11 10 9 22 22 H 1.07993 * 119.99556 * 180.23335 * 12 11 10 23 23 H 1.08006 * 120.00212 * 179.76662 * 13 12 11 24 24 H 1.08000 * 120.00678 * 359.96189 * 16 10 9 25 25 H 1.09003 * 113.86296 * 337.34517 * 17 9 7 26 26 H 1.09002 * 113.86182 * 109.04625 * 17 9 7 27 27 H 1.09005 * 113.85781 * 221.66076 * 19 18 17 28 28 H 1.08999 * 113.98363 * 89.96926 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4000 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0797 -1.1968 -0.1031 9 6 1.2580 -2.4953 0.1421 10 6 0.5675 -2.9203 -1.1282 11 6 -0.2541 -4.0322 -1.1295 12 6 -0.8916 -4.4199 -2.2931 13 6 -0.6996 -3.7018 -3.4587 14 6 0.1264 -2.5923 -3.4592 15 17 0.3684 -1.6906 -4.9228 16 6 0.7601 -2.2017 -2.2928 17 6 0.3623 -2.5646 1.3933 18 8 0.8790 -3.9013 1.5505 19 6 2.0808 -3.6147 0.8073 20 1 -0.4850 0.8367 0.0736 21 1 -0.4006 -4.5963 -0.2202 22 1 -1.5362 -5.2863 -2.2927 23 1 -1.1948 -4.0070 -4.3688 24 1 1.4050 -1.3353 -2.2925 25 1 0.6605 -1.8802 2.1876 26 1 -0.7049 -2.5272 1.1743 27 1 2.3766 -4.4104 0.1235 28 1 2.9050 -3.2511 1.4209 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258575752.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:44 Heat of formation + Delta-G solvation = -12.306170 kcal Electronic energy + Delta-G solvation = -14904.574969 eV Core-core repulsion = 12332.881779 eV Total energy + Delta-G solvation = -2571.693191 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.53943 -39.32530 -37.22291 -35.03338 -32.44465 -31.37994 -29.53167 -27.10988 -26.42972 -23.55896 -23.16393 -20.47776 -18.77727 -17.69054 -16.95184 -16.40985 -16.31906 -16.01934 -15.78014 -15.26822 -14.35959 -14.34918 -13.88949 -13.52458 -13.28738 -12.97948 -12.69965 -12.39592 -12.26230 -12.20652 -12.16063 -11.60137 -11.18931 -10.72639 -10.59579 -10.24400 -9.50934 -9.32565 -8.12751 -6.24949 0.44194 0.64575 1.30460 1.41246 1.46118 1.51997 2.42239 2.91965 3.12195 3.17664 4.07368 4.18017 4.31954 4.40361 4.60136 4.64815 4.70591 4.77366 4.86045 4.97550 5.13836 5.36254 5.44476 5.54509 5.55878 5.70081 5.76879 5.95511 6.17139 6.33895 6.78443 7.43252 8.92702 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.018611 B = 0.012744 C = 0.008346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.101589 B = 2196.635329 C = 3354.010762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.040 3.960 3 Si 0.935 3.065 4 H -0.275 1.275 5 H -0.270 1.270 6 H -0.290 1.290 7 C -0.531 4.531 8 H 0.059 0.941 9 C 0.035 3.965 10 C -0.028 4.028 11 C -0.132 4.132 12 C -0.113 4.113 13 C -0.128 4.128 14 C -0.055 4.055 15 Cl -0.086 7.086 16 C -0.084 4.084 17 C 0.078 3.922 18 O -0.409 6.409 19 C 0.046 3.954 20 H 0.261 0.739 21 H 0.128 0.872 22 H 0.158 0.842 23 H 0.150 0.850 24 H 0.114 0.886 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.085 0.915 28 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.557 -5.904 -4.651 7.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.163 4.163 3 Si 0.762 3.238 4 H -0.201 1.201 5 H -0.194 1.194 6 H -0.216 1.216 7 C -0.569 4.569 8 H 0.078 0.922 9 C 0.034 3.966 10 C -0.028 4.028 11 C -0.150 4.150 12 C -0.131 4.131 13 C -0.146 4.146 14 C -0.081 4.081 15 Cl -0.057 7.057 16 C -0.102 4.102 17 C 0.001 3.999 18 O -0.329 6.329 19 C -0.030 4.030 20 H 0.071 0.929 21 H 0.146 0.854 22 H 0.175 0.825 23 H 0.168 0.832 24 H 0.132 0.868 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.104 0.896 28 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.794 -5.925 -4.722 7.618 hybrid contribution 0.453 1.623 -0.025 1.685 sum -0.341 -4.302 -4.748 6.416 Atomic orbital electron populations 1.70057 1.06692 1.27602 1.48786 1.25436 0.95318 1.01201 0.94302 0.85894 0.79058 0.80634 0.78222 1.20113 1.19426 1.21626 1.21117 0.93346 0.90662 1.51735 0.92247 1.19985 0.92465 0.93957 0.90172 1.19904 0.95407 0.92969 0.94555 1.21460 0.97280 0.96973 0.99247 1.21309 0.99881 1.00534 0.91353 1.21152 0.98987 0.94395 1.00084 1.21103 1.02849 0.96668 0.87496 1.98302 1.96278 1.75210 1.35937 1.20980 0.99136 0.99257 0.90852 1.23611 0.98179 0.81180 0.96926 1.89406 1.34542 1.30540 1.78363 1.24109 0.88909 0.96814 0.93194 0.92928 0.85391 0.82492 0.83250 0.86777 0.92283 0.91668 0.89633 0.90197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.30 12.39 21.45 0.27 -47.04 15 2 C 0.04 2.00 4.70 84.65 0.40 2.40 15 3 Si 0.94 41.06 29.55 68.60 2.03 43.08 15 4 H -0.28 -11.86 7.11 99.48 0.71 -11.15 15 5 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15 6 H -0.29 -12.90 7.11 99.48 0.71 -12.19 15 7 C -0.53 -26.41 6.80 25.60 0.17 -26.24 15 8 H 0.06 2.94 7.82 -2.91 -0.02 2.92 15 9 C 0.03 1.59 0.83 -52.98 -0.04 1.54 15 10 C -0.03 -1.20 5.11 -19.87 -0.10 -1.31 15 11 C -0.13 -4.97 8.85 22.27 0.20 -4.78 15 12 C -0.11 -3.54 10.05 22.27 0.22 -3.31 15 13 C -0.13 -4.09 9.83 22.29 0.22 -3.87 15 14 C -0.05 -2.07 6.32 22.32 0.14 -1.93 15 15 Cl -0.09 -2.92 28.96 -2.72 -0.08 -3.00 15 16 C -0.08 -3.69 8.90 22.29 0.20 -3.49 15 17 C 0.08 3.55 6.86 72.27 0.50 4.05 15 18 O -0.41 -17.34 10.93 -148.98 -1.63 -18.97 15 19 C 0.05 1.85 8.13 72.27 0.59 2.44 15 20 H 0.26 13.48 8.32 -92.71 -0.77 12.70 15 21 H 0.13 4.74 6.53 -2.91 -0.02 4.72 15 22 H 0.16 3.66 8.06 -2.91 -0.02 3.63 15 23 H 0.15 3.80 8.06 -2.91 -0.02 3.77 15 24 H 0.11 5.59 6.40 -2.91 -0.02 5.57 15 25 H 0.06 2.80 8.09 -2.39 -0.02 2.78 15 26 H 0.06 3.07 7.96 -2.39 -0.02 3.05 15 27 H 0.09 3.09 8.09 -2.38 -0.02 3.07 15 28 H 0.08 3.06 8.09 -2.39 -0.02 3.04 15 Total: -1.00 -53.65 256.94 4.24 -49.41 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 1.17 Total: 11.00 kcal Atomic # 6 Polarization: -36.98 SS G_CDS: 2.49 Total: -34.49 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: 0.27 Total: -47.04 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -1.63 Total: -18.97 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.08 kcal Atomic # 17 Polarization: -2.92 SS G_CDS: -0.08 Total: -3.00 kcal Total: -53.65 4.24 -49.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258575752.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.104 kcal (2) G-P(sol) polarization free energy of solvation -53.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds