Wall clock time and date at job start Mon Mar 30 2020 05:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99744 * 2 1 4 4 H 1.48500 * 109.47187 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47209 * 120.00244 * 3 2 1 6 6 H 1.48503 * 109.47242 * 240.00054 * 3 2 1 7 7 C 1.37881 * 120.00404 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00057 * 185.37582 * 7 2 1 9 9 C 1.50698 * 119.99913 * 5.37876 * 7 2 1 10 10 C 1.50703 * 112.99714 * 65.30113 * 9 7 2 11 11 C 1.38249 * 119.98448 * 234.26049 * 10 9 7 12 12 C 1.38208 * 120.01154 * 179.73071 * 11 10 9 13 13 C 1.38354 * 119.98862 * 0.53923 * 12 11 10 14 14 Cl 1.73596 * 120.01488 * 179.70342 * 13 12 11 15 15 C 1.38356 * 119.97169 * 359.73547 * 13 12 11 16 16 C 1.38211 * 119.98618 * 359.97438 * 15 13 12 17 17 C 1.54028 * 113.81573 * 293.47652 * 9 7 2 18 18 O 1.44449 * 85.42741 * 223.23638 * 17 9 7 19 19 C 1.44183 * 93.37616 * 24.08660 * 18 17 9 20 20 H 0.97003 * 119.99531 * 174.98953 * 1 2 3 21 21 H 1.07998 * 119.99185 * 0.02562 * 11 10 9 22 22 H 1.08001 * 120.00712 * 180.27041 * 12 11 10 23 23 H 1.08000 * 120.00537 * 180.02562 * 15 13 12 24 24 H 1.08001 * 119.99189 * 179.97438 * 16 15 13 25 25 H 1.08999 * 113.86623 * 337.33881 * 17 9 7 26 26 H 1.09000 * 113.87060 * 109.05072 * 17 9 7 27 27 H 1.08998 * 113.86563 * 221.77400 * 19 18 17 28 28 H 1.08995 * 113.86316 * 90.06108 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0811 -1.1961 0.0871 9 6 1.2562 -2.4962 -0.1235 10 6 0.5652 -2.6549 -1.4533 11 6 -0.7889 -2.9297 -1.4999 12 6 -1.4243 -3.0698 -2.7192 13 6 -0.7029 -2.9461 -3.8932 14 17 -1.4988 -3.1296 -5.4250 15 6 0.6534 -2.6767 -3.8459 16 6 1.2865 -2.5308 -2.6260 17 6 0.3573 -2.8136 1.0864 18 8 0.8751 -4.1572 0.9721 19 6 2.0773 -3.7281 0.3017 20 1 -0.4849 -0.8369 -0.0734 21 1 -1.3512 -3.0302 -0.5833 22 1 -2.4831 -3.2802 -2.7555 23 1 1.2170 -2.5796 -4.7620 24 1 2.3453 -2.3210 -2.5890 25 1 0.6543 -2.3030 2.0025 26 1 -0.7093 -2.7314 0.8771 27 1 2.3721 -4.3696 -0.5287 28 1 2.9007 -3.4974 0.9776 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258764711.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:07 Heat of formation + Delta-G solvation = -14.804929 kcal Electronic energy + Delta-G solvation = -14868.393783 eV Core-core repulsion = 12296.592238 eV Total energy + Delta-G solvation = -2571.801545 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.76245 -39.50487 -37.35066 -35.21758 -32.23590 -32.01837 -29.36509 -27.46542 -26.10925 -23.71490 -23.42042 -20.72823 -19.21185 -18.32702 -16.88437 -16.72642 -16.37352 -15.85641 -15.62897 -15.50590 -14.52556 -14.40602 -14.25371 -13.90969 -13.25367 -12.75830 -12.64292 -12.56538 -12.34644 -12.03877 -11.93757 -11.78973 -11.30728 -10.78247 -10.63326 -10.25066 -9.91660 -9.32392 -8.48986 -6.30928 0.31617 0.42314 1.17161 1.58257 1.63028 1.81663 2.57996 2.74674 2.97769 3.20561 3.75629 3.96128 4.01327 4.09340 4.35152 4.48241 4.51547 4.58388 4.68818 4.78236 4.97405 5.05379 5.26529 5.29711 5.31680 5.49265 5.78317 5.94174 6.05455 6.21838 6.67690 7.49091 8.87278 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.023158 B = 0.009494 C = 0.007696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.775164 B = 2948.668569 C = 3637.402182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.010 4.010 3 Si 1.103 2.897 4 H -0.291 1.291 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.599 4.599 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.032 4.032 11 C -0.128 4.128 12 C -0.112 4.112 13 C -0.056 4.056 14 Cl -0.070 7.070 15 C -0.112 4.112 16 C -0.106 4.106 17 C 0.038 3.962 18 O -0.408 6.408 19 C 0.053 3.947 20 H 0.271 0.729 21 H 0.122 0.878 22 H 0.145 0.855 23 H 0.150 0.850 24 H 0.131 0.869 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.502 -4.707 -6.304 7.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.212 4.212 3 Si 0.926 3.074 4 H -0.217 1.217 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.637 4.637 8 H 0.075 0.925 9 C 0.019 3.981 10 C -0.032 4.032 11 C -0.146 4.146 12 C -0.130 4.130 13 C -0.082 4.082 14 Cl -0.042 7.042 15 C -0.130 4.130 16 C -0.124 4.124 17 C -0.039 4.039 18 O -0.327 6.327 19 C -0.024 4.024 20 H 0.083 0.917 21 H 0.140 0.860 22 H 0.163 0.837 23 H 0.168 0.832 24 H 0.149 0.851 25 H 0.081 0.919 26 H 0.094 0.906 27 H 0.106 0.894 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.130 -3.351 -6.293 7.131 hybrid contribution -0.005 -1.376 0.035 1.377 sum 0.124 -4.728 -6.258 7.844 Atomic orbital electron populations 1.70855 1.07765 1.31676 1.46063 1.26837 0.96518 1.05384 0.92487 0.83091 0.74294 0.72252 0.77737 1.21721 1.19823 1.19833 1.21989 0.94642 0.91253 1.55776 0.92536 1.20144 0.93038 0.95580 0.89289 1.20075 0.93683 0.93665 0.95803 1.21166 0.94790 1.00928 0.97712 1.21112 1.00678 1.00746 0.90513 1.20853 0.93451 1.07270 0.86650 1.98319 1.80207 1.96237 1.29394 1.21185 0.92821 1.00187 0.98806 1.20982 1.00841 0.99537 0.91077 1.24263 0.98879 0.81261 0.99453 1.89489 1.34816 1.27088 1.81324 1.24037 0.88741 0.94097 0.95514 0.91718 0.86034 0.83743 0.83217 0.85147 0.91864 0.90595 0.89386 0.90068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.60 13.40 21.45 0.29 -51.31 15 2 C -0.01 -0.54 5.31 84.66 0.45 -0.09 15 3 Si 1.10 46.90 29.91 68.60 2.05 48.95 15 4 H -0.29 -12.78 7.11 99.48 0.71 -12.07 15 5 H -0.27 -10.87 7.11 99.48 0.71 -10.17 15 6 H -0.27 -10.91 7.11 99.48 0.71 -10.20 15 7 C -0.60 -29.94 7.95 25.60 0.20 -29.73 15 8 H 0.06 2.78 7.82 -2.91 -0.02 2.76 15 9 C 0.02 0.91 0.51 -52.98 -0.03 0.89 15 10 C -0.03 -1.36 4.10 -19.86 -0.08 -1.44 15 11 C -0.13 -5.16 8.25 22.27 0.18 -4.98 15 12 C -0.11 -3.93 9.83 22.29 0.22 -3.71 15 13 C -0.06 -1.86 6.32 22.33 0.14 -1.72 15 14 Cl -0.07 -1.96 28.96 -2.72 -0.08 -2.04 15 15 C -0.11 -3.77 9.83 22.29 0.22 -3.55 15 16 C -0.11 -4.14 9.36 22.26 0.21 -3.93 15 17 C 0.04 1.73 6.79 72.29 0.49 2.22 15 18 O -0.41 -17.80 12.41 -148.98 -1.85 -19.65 15 19 C 0.05 2.12 8.34 72.30 0.60 2.73 15 20 H 0.27 14.74 4.56 -92.71 -0.42 14.31 15 21 H 0.12 4.89 5.64 -2.91 -0.02 4.87 15 22 H 0.14 4.30 8.06 -2.91 -0.02 4.28 15 23 H 0.15 4.16 8.06 -2.91 -0.02 4.13 15 24 H 0.13 4.91 8.01 -2.91 -0.02 4.89 15 25 H 0.06 2.97 8.09 -2.39 -0.02 2.95 15 26 H 0.08 3.36 5.25 -2.39 -0.01 3.35 15 27 H 0.09 3.20 8.09 -2.39 -0.02 3.18 15 28 H 0.08 3.13 8.09 -2.39 -0.02 3.11 15 Total: -1.00 -56.51 254.27 4.54 -51.97 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 1.52 Total: 15.40 kcal Atomic # 6 Polarization: -45.93 SS G_CDS: 2.61 Total: -43.32 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: 0.29 Total: -51.31 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -1.85 Total: -19.65 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.05 Total: 48.95 kcal Atomic # 17 Polarization: -1.96 SS G_CDS: -0.08 Total: -2.04 kcal Total: -56.51 4.54 -51.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258764711.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.168 kcal (2) G-P(sol) polarization free energy of solvation -56.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds