Wall clock time and date at job start Mon Mar 30 2020 05:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00439 * 2 1 4 4 H 1.48496 * 109.46991 * 269.99627 * 3 2 1 5 5 H 1.48496 * 109.46927 * 29.99776 * 3 2 1 6 6 H 1.48502 * 109.47222 * 149.99715 * 3 2 1 7 7 C 1.37885 * 119.99393 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00137 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99690 * 180.02562 * 7 2 1 10 10 H 1.09002 * 110.64825 * 300.69644 * 9 7 2 11 11 C 1.54450 * 110.72706 * 177.53390 * 9 7 2 12 12 O 1.43890 * 105.08371 * 219.67254 * 11 9 7 13 13 C 1.43780 * 107.10593 * 358.28834 * 12 11 9 14 14 H 1.08992 * 110.11874 * 265.85169 * 13 12 11 15 15 C 1.50694 * 110.11458 * 144.26101 * 13 12 11 16 16 C 1.38270 * 119.98460 * 61.45827 * 15 13 12 17 17 C 1.38228 * 120.05317 * 180.02562 * 16 15 13 18 18 C 1.38214 * 120.02229 * 359.95023 * 17 16 15 19 19 C 1.38434 * 119.97973 * 0.02839 * 18 17 16 20 20 F 1.35096 * 120.03002 * 179.97438 * 19 18 17 21 21 C 1.38174 * 119.99301 * 241.18730 * 15 13 12 22 22 O 1.44388 * 106.17062 * 25.08851 * 13 12 11 23 23 H 0.97008 * 119.99342 * 0.02562 * 1 2 3 24 24 H 1.09001 * 110.32037 * 338.57440 * 11 9 7 25 25 H 1.09008 * 110.31646 * 100.66564 * 11 9 7 26 26 H 1.07999 * 119.97551 * 0.02562 * 16 15 13 27 27 H 1.07995 * 119.98675 * 179.97438 * 17 16 15 28 28 H 1.08004 * 120.01380 * 180.02562 * 18 17 16 29 29 H 1.08003 * 120.00926 * 359.97438 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4969 2.0462 -1.4000 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 1.4644 -2.1295 0.0014 9 6 3.5115 -1.1943 0.0011 10 1 3.8962 -0.6738 -0.8759 11 6 4.0580 -2.6375 0.0638 12 8 5.1903 -2.5710 0.9491 13 6 5.3356 -1.1971 1.3474 14 1 6.0464 -0.6906 0.6945 15 6 5.8006 -1.1188 2.7787 16 6 7.0177 -1.6661 3.1408 17 6 7.4453 -1.5956 4.4533 18 6 6.6571 -0.9769 5.4052 19 6 5.4386 -0.4282 5.0439 20 9 4.6670 0.1764 5.9736 21 6 5.0133 -0.4953 3.7277 22 8 4.0274 -0.6001 1.2171 23 1 -0.4849 0.8402 -0.0004 24 1 3.3018 -3.3114 0.4664 25 1 4.3693 -2.9677 -0.9273 26 1 7.6347 -2.1491 2.3975 27 1 8.3959 -2.0238 4.7350 28 1 6.9915 -0.9215 6.4307 29 1 4.0648 -0.0637 3.4437 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258829310.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:27 Heat of formation + Delta-G solvation = -104.936467 kcal Electronic energy + Delta-G solvation = -16707.888931 eV Core-core repulsion = 13703.842614 eV Total energy + Delta-G solvation = -3004.046317 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.70626 -39.82134 -38.33976 -34.27133 -32.87075 -31.70964 -30.37599 -29.17120 -25.40991 -24.45954 -22.56982 -21.41887 -20.68307 -17.70423 -17.09201 -16.34067 -16.16662 -15.99941 -15.40411 -15.24779 -14.70794 -14.39168 -14.03202 -13.54802 -13.01790 -12.93441 -12.62810 -12.33666 -11.97195 -11.82534 -11.50347 -11.00606 -10.95788 -10.21870 -10.04173 -9.77742 -9.22634 -8.89763 -8.83269 -8.74488 -8.56843 -6.27368 -4.39135 1.22322 1.34440 3.25975 3.33675 3.52645 3.64265 4.20159 4.36033 4.42346 4.52620 4.91468 5.00650 5.20572 5.26338 5.46181 5.56134 5.66680 5.75695 5.90673 6.01062 6.09343 6.16399 6.31511 6.37431 6.65551 6.65645 6.83137 7.01598 7.41003 7.85875 8.22467 8.71827 9.33077 10.82482 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.026454 B = 0.008529 C = 0.007136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.170163 B = 3282.229461 C = 3922.628626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.088 3.912 3 Si 0.869 3.131 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.231 1.231 7 C -0.526 4.526 8 H 0.085 0.915 9 C 0.143 3.857 10 H 0.043 0.957 11 C 0.037 3.963 12 O -0.394 6.394 13 C 0.258 3.742 14 H 0.074 0.926 15 C -0.057 4.057 16 C -0.108 4.108 17 C -0.101 4.101 18 C -0.155 4.155 19 C 0.090 3.910 20 F -0.141 7.141 21 C -0.117 4.117 22 O -0.371 6.371 23 H 0.269 0.731 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.130 0.870 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.093 -1.340 5.899 15.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.118 4.118 3 Si 0.695 3.305 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.154 1.154 7 C -0.563 4.563 8 H 0.103 0.897 9 C 0.088 3.912 10 H 0.060 0.940 11 C -0.040 4.040 12 O -0.315 6.315 13 C 0.162 3.838 14 H 0.091 0.909 15 C -0.057 4.057 16 C -0.127 4.127 17 C -0.119 4.119 18 C -0.174 4.174 19 C 0.071 3.929 20 F -0.120 7.120 21 C -0.136 4.136 22 O -0.292 6.292 23 H 0.079 0.921 24 H 0.099 0.901 25 H 0.087 0.913 26 H 0.148 0.852 27 H 0.149 0.851 28 H 0.150 0.850 29 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 13.916 -1.224 6.144 15.261 hybrid contribution 0.050 1.000 -0.012 1.001 sum 13.966 -0.224 6.132 15.255 Atomic orbital electron populations 1.69900 1.06614 1.27805 1.47462 1.25033 0.94751 0.99761 0.92262 0.86978 0.82541 0.82444 0.78585 1.20599 1.21217 1.15374 1.20789 0.86473 0.95363 1.53629 0.89725 1.21810 0.97010 0.88034 0.84337 0.93981 1.23983 0.87113 1.00094 0.92764 1.88773 1.50012 1.26644 1.66102 1.22662 0.89682 0.80819 0.90605 0.90874 1.19695 0.94078 0.97244 0.94717 1.20983 0.95822 0.99255 0.96606 1.20892 0.99597 0.98921 0.92474 1.21113 0.94013 1.01370 1.00894 1.17704 0.90638 0.98081 0.86520 1.91488 1.74608 1.81179 1.64725 1.21197 1.01696 1.00148 0.90513 1.89811 1.27298 1.64967 1.47157 0.92126 0.90075 0.91282 0.85176 0.85065 0.85043 0.83224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.28 13.96 55.43 0.77 -25.51 15 2 C 0.09 2.49 5.47 -17.82 -0.10 2.39 15 3 Si 0.87 21.11 27.09 -169.99 -4.61 16.51 15 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 6 H -0.23 -5.45 5.51 56.52 0.31 -5.14 15 7 C -0.53 -14.44 9.38 -34.44 -0.32 -14.77 15 8 H 0.08 2.47 7.81 -52.49 -0.41 2.06 15 9 C 0.14 3.32 2.59 -27.12 -0.07 3.25 15 10 H 0.04 0.94 7.58 -51.93 -0.39 0.55 15 11 C 0.04 0.74 7.65 37.92 0.29 1.03 15 12 O -0.39 -7.75 11.17 -59.28 -0.66 -8.41 15 13 C 0.26 4.95 4.19 36.00 0.15 5.10 15 14 H 0.07 1.26 8.14 -51.93 -0.42 0.84 15 15 C -0.06 -0.99 5.58 -104.64 -0.58 -1.57 15 16 C -0.11 -1.51 9.65 -39.57 -0.38 -1.90 15 17 C -0.10 -1.20 10.04 -39.59 -0.40 -1.60 15 18 C -0.16 -2.00 10.03 -39.52 -0.40 -2.40 15 19 C 0.09 1.43 7.30 -39.42 -0.29 1.14 15 20 F -0.14 -2.32 17.27 2.25 0.04 -2.28 15 21 C -0.12 -2.11 9.38 -39.51 -0.37 -2.48 15 22 O -0.37 -8.56 7.07 -59.28 -0.42 -8.98 15 23 H 0.27 7.50 8.31 -40.82 -0.34 7.16 15 24 H 0.08 1.68 7.68 -51.93 -0.40 1.28 15 25 H 0.07 1.20 8.14 -51.92 -0.42 0.78 15 26 H 0.13 1.57 8.06 -52.49 -0.42 1.14 15 27 H 0.13 1.12 8.06 -52.49 -0.42 0.69 15 28 H 0.13 1.34 8.06 -52.48 -0.42 0.92 15 29 H 0.15 3.00 7.03 -52.48 -0.37 2.63 15 LS Contribution 256.41 15.07 3.86 3.86 Total: -1.00 -30.10 256.41 -6.39 -36.49 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -2.91 Total: 0.11 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -2.47 Total: -11.79 kcal Atomic # 7 Polarization: -26.28 SS G_CDS: 0.77 Total: -25.51 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -1.08 Total: -17.39 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.61 Total: 16.51 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.10 -6.39 -36.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258829310.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.448 kcal (2) G-P(sol) polarization free energy of solvation -30.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds