Wall clock time and date at job start Mon Mar 30 2020 05:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00439 * 2 1 4 4 H 1.48496 * 109.46991 * 269.99627 * 3 2 1 5 5 H 1.48496 * 109.46927 * 29.99776 * 3 2 1 6 6 H 1.48502 * 109.47222 * 149.99715 * 3 2 1 7 7 C 1.37885 * 119.99393 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00137 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99690 * 180.02562 * 7 2 1 10 10 H 1.09002 * 110.64825 * 300.69644 * 9 7 2 11 11 C 1.54450 * 110.72706 * 177.53390 * 9 7 2 12 12 O 1.43890 * 105.08371 * 219.67254 * 11 9 7 13 13 C 1.43780 * 107.10593 * 358.28834 * 12 11 9 14 14 H 1.08992 * 110.11874 * 265.85169 * 13 12 11 15 15 C 1.50694 * 110.11458 * 144.26101 * 13 12 11 16 16 C 1.38270 * 119.98460 * 61.45827 * 15 13 12 17 17 C 1.38228 * 120.05317 * 180.02562 * 16 15 13 18 18 C 1.38214 * 120.02229 * 359.95023 * 17 16 15 19 19 C 1.38434 * 119.97973 * 0.02839 * 18 17 16 20 20 F 1.35096 * 120.03002 * 179.97438 * 19 18 17 21 21 C 1.38174 * 119.99301 * 241.18730 * 15 13 12 22 22 O 1.44388 * 106.17062 * 25.08851 * 13 12 11 23 23 H 0.97008 * 119.99342 * 0.02562 * 1 2 3 24 24 H 1.09001 * 110.32037 * 338.57440 * 11 9 7 25 25 H 1.09008 * 110.31646 * 100.66564 * 11 9 7 26 26 H 1.07999 * 119.97551 * 0.02562 * 16 15 13 27 27 H 1.07995 * 119.98675 * 179.97438 * 17 16 15 28 28 H 1.08004 * 120.01380 * 180.02562 * 18 17 16 29 29 H 1.08003 * 120.00926 * 359.97438 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4969 2.0462 -1.4000 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 1.4644 -2.1295 0.0014 9 6 3.5115 -1.1943 0.0011 10 1 3.8962 -0.6738 -0.8759 11 6 4.0580 -2.6375 0.0638 12 8 5.1903 -2.5710 0.9491 13 6 5.3356 -1.1971 1.3474 14 1 6.0464 -0.6906 0.6945 15 6 5.8006 -1.1188 2.7787 16 6 7.0177 -1.6661 3.1408 17 6 7.4453 -1.5956 4.4533 18 6 6.6571 -0.9769 5.4052 19 6 5.4386 -0.4282 5.0439 20 9 4.6670 0.1764 5.9736 21 6 5.0133 -0.4953 3.7277 22 8 4.0274 -0.6001 1.2171 23 1 -0.4849 0.8402 -0.0004 24 1 3.3018 -3.3114 0.4664 25 1 4.3693 -2.9677 -0.9273 26 1 7.6347 -2.1491 2.3975 27 1 8.3959 -2.0238 4.7350 28 1 6.9915 -0.9215 6.4307 29 1 4.0648 -0.0637 3.4437 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258829310.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:26 Heat of formation + Delta-G solvation = -124.129436 kcal Electronic energy + Delta-G solvation = -16708.721200 eV Core-core repulsion = 13703.842614 eV Total energy + Delta-G solvation = -3004.878587 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.93714 -41.33918 -39.59215 -35.97707 -34.84766 -33.13589 -31.52759 -30.85172 -27.16592 -25.98837 -23.77902 -22.88205 -22.24346 -19.53403 -18.54045 -17.94870 -17.54582 -17.11807 -16.86670 -16.62655 -16.35755 -16.07181 -15.59852 -14.85265 -14.72543 -14.31392 -14.16483 -13.98466 -13.47898 -13.18356 -12.89171 -12.71954 -12.33541 -12.08489 -11.89776 -11.67167 -10.88308 -10.85773 -10.57822 -10.02475 -9.71488 -8.44751 -6.60729 0.08965 0.20114 1.31266 1.35728 1.59352 2.32571 2.45856 2.71038 2.86285 3.22627 3.32810 3.82297 3.89269 3.99380 4.04388 4.19750 4.29967 4.34373 4.47749 4.55779 4.82989 4.99043 5.02194 5.08441 5.15118 5.30043 5.45158 5.49606 5.89923 6.05240 6.20523 6.52240 7.15359 8.68876 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.026454 B = 0.008529 C = 0.007136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.170163 B = 3282.229461 C = 3922.628626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.033 3.967 3 Si 0.932 3.068 4 H -0.263 1.263 5 H -0.291 1.291 6 H -0.222 1.222 7 C -0.535 4.535 8 H 0.049 0.951 9 C 0.140 3.860 10 H 0.059 0.941 11 C 0.043 3.957 12 O -0.392 6.392 13 C 0.252 3.748 14 H 0.100 0.900 15 C -0.081 4.081 16 C -0.102 4.102 17 C -0.082 4.082 18 C -0.141 4.141 19 C 0.071 3.929 20 F -0.151 7.151 21 C -0.147 4.147 22 O -0.395 6.395 23 H 0.271 0.729 24 H 0.065 0.935 25 H 0.104 0.896 26 H 0.155 0.845 27 H 0.180 0.820 28 H 0.166 0.834 29 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.901 -1.494 6.530 19.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.168 4.168 3 Si 0.755 3.245 4 H -0.188 1.188 5 H -0.217 1.217 6 H -0.145 1.145 7 C -0.572 4.572 8 H 0.068 0.932 9 C 0.085 3.915 10 H 0.077 0.923 11 C -0.033 4.033 12 O -0.314 6.314 13 C 0.158 3.842 14 H 0.117 0.883 15 C -0.082 4.082 16 C -0.120 4.120 17 C -0.099 4.099 18 C -0.160 4.160 19 C 0.052 3.948 20 F -0.130 7.130 21 C -0.166 4.166 22 O -0.316 6.316 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.121 0.879 26 H 0.172 0.828 27 H 0.197 0.803 28 H 0.183 0.817 29 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 17.741 -1.393 6.769 19.040 hybrid contribution -1.079 0.943 -0.131 1.439 sum 16.662 -0.450 6.638 17.941 Atomic orbital electron populations 1.70026 1.08340 1.28772 1.49710 1.25900 0.95433 1.03458 0.91984 0.85991 0.81329 0.77844 0.79332 1.18801 1.21740 1.14451 1.21038 0.89217 0.94017 1.52923 0.93244 1.21718 0.94401 0.90425 0.84975 0.92344 1.23891 0.87109 0.97849 0.94460 1.88753 1.49361 1.27188 1.66115 1.23031 0.88243 0.80238 0.92728 0.88321 1.19696 0.95802 0.99222 0.93477 1.21303 0.94379 0.98043 0.98314 1.21433 1.00687 0.96827 0.91002 1.21542 0.92177 0.99340 1.02898 1.17934 0.92012 0.99215 0.85652 1.91458 1.75190 1.81559 1.64791 1.21018 1.01122 1.02230 0.92240 1.89734 1.29708 1.65469 1.46721 0.91976 0.91704 0.87857 0.82751 0.80259 0.81693 0.86864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.62 13.96 21.45 0.30 -57.32 15 2 C 0.03 1.94 5.47 84.66 0.46 2.40 15 3 Si 0.93 44.36 27.09 68.60 1.86 46.22 15 4 H -0.26 -11.70 7.11 99.48 0.71 -11.00 15 5 H -0.29 -13.95 7.11 99.48 0.71 -13.25 15 6 H -0.22 -10.16 5.51 99.48 0.55 -9.61 15 7 C -0.54 -30.35 9.38 25.60 0.24 -30.11 15 8 H 0.05 3.05 7.81 -2.91 -0.02 3.03 15 9 C 0.14 6.47 2.59 30.34 0.08 6.55 15 10 H 0.06 2.52 7.58 -2.39 -0.02 2.50 15 11 C 0.04 1.70 7.65 72.47 0.55 2.25 15 12 O -0.39 -14.72 11.17 -125.98 -1.41 -16.12 15 13 C 0.25 9.30 4.19 71.23 0.30 9.59 15 14 H 0.10 3.11 8.14 -2.39 -0.02 3.09 15 15 C -0.08 -2.70 5.58 -19.87 -0.11 -2.81 15 16 C -0.10 -2.45 9.65 22.27 0.22 -2.23 15 17 C -0.08 -1.52 10.04 22.26 0.22 -1.30 15 18 C -0.14 -3.09 10.03 22.31 0.22 -2.87 15 19 C 0.07 2.19 7.30 22.38 0.16 2.35 15 20 F -0.15 -4.95 17.27 44.97 0.78 -4.17 15 21 C -0.15 -5.34 9.38 22.31 0.21 -5.13 15 22 O -0.39 -18.19 7.07 -125.98 -0.89 -19.08 15 23 H 0.27 15.69 8.31 -92.70 -0.77 14.92 15 24 H 0.06 2.73 7.68 -2.39 -0.02 2.71 15 25 H 0.10 3.35 8.14 -2.38 -0.02 3.33 15 26 H 0.15 2.93 8.06 -2.91 -0.02 2.91 15 27 H 0.18 1.70 8.06 -2.91 -0.02 1.68 15 28 H 0.17 2.51 8.06 -2.91 -0.02 2.49 15 29 H 0.11 4.84 7.03 -2.91 -0.02 4.82 15 Total: -1.00 -68.35 256.41 4.20 -64.15 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: 1.00 Total: 7.63 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: 2.56 Total: -21.30 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: 0.30 Total: -57.32 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -2.30 Total: -35.20 kcal Atomic # 9 Polarization: -4.95 SS G_CDS: 0.78 Total: -4.17 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.86 Total: 46.22 kcal Total: -68.35 4.20 -64.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258829310.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.976 kcal (2) G-P(sol) polarization free energy of solvation -68.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds