Wall clock time and date at job start Mon Mar 30 2020 05:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48500 * 109.47210 * 269.99666 * 3 2 1 5 5 H 1.48504 * 109.47424 * 29.99897 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99987 * 3 2 1 7 7 C 1.37871 * 119.99908 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00483 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 179.72112 * 7 2 1 10 10 H 1.09007 * 110.61871 * 61.90494 * 9 7 2 11 11 C 1.54917 * 110.69508 * 185.16782 * 9 7 2 12 12 O 1.44792 * 101.72083 * 153.96198 * 11 9 7 13 13 C 1.43750 * 104.81371 * 323.90070 * 12 11 9 14 14 H 1.09004 * 109.62588 * 264.43294 * 13 12 11 15 15 C 1.50702 * 109.51059 * 144.12243 * 13 12 11 16 16 C 1.38267 * 119.98107 * 240.42771 * 15 13 12 17 17 C 1.38232 * 120.04372 * 179.76374 * 16 15 13 18 18 C 1.38213 * 120.02570 * 0.51209 * 17 16 15 19 19 C 1.38441 * 119.97690 * 359.74201 * 18 17 16 20 20 F 1.35092 * 120.02627 * 179.97438 * 19 18 17 21 21 C 1.38171 * 119.98649 * 60.70456 * 15 13 12 22 22 O 1.43367 * 108.79315 * 24.31011 * 13 12 11 23 23 H 0.96995 * 120.00181 * 0.02562 * 1 2 3 24 24 H 1.09003 * 110.97546 * 272.06959 * 11 9 7 25 25 H 1.08998 * 110.97600 * 35.85488 * 11 9 7 26 26 H 1.07992 * 119.98062 * 0.02562 * 16 15 13 27 27 H 1.08000 * 119.98018 * 180.25992 * 17 16 15 28 28 H 1.08000 * 120.01140 * 179.76610 * 18 17 16 29 29 H 1.07998 * 120.01296 * 359.95540 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 -0.0058 10 1 3.8992 -0.7109 0.8912 11 6 4.0585 -2.6376 -0.1345 12 8 5.3515 -2.4090 -0.7447 13 6 5.1435 -1.3078 -1.6450 14 1 4.9497 -1.6870 -2.6484 15 6 6.3707 -0.4333 -1.6626 16 6 6.2803 0.8919 -1.2788 17 6 7.4061 1.6940 -1.2898 18 6 8.6213 1.1747 -1.6945 19 6 8.7119 -0.1507 -2.0840 20 9 9.8991 -0.6592 -2.4803 21 6 7.5845 -0.9547 -2.0676 22 8 4.0162 -0.5470 -1.1914 23 1 -0.4850 0.8400 -0.0004 24 1 4.1662 -3.1029 0.8453 25 1 3.4220 -3.2397 -0.7829 26 1 5.3304 1.2996 -0.9663 27 1 7.3351 2.7279 -0.9858 28 1 9.5000 1.8025 -1.7066 29 1 7.6540 -1.9889 -2.3709 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258829322.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:29 Heat of formation + Delta-G solvation = -105.328968 kcal Electronic energy + Delta-G solvation = -16720.526594 eV Core-core repulsion = 13716.463257 eV Total energy + Delta-G solvation = -3004.063337 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.83523 -39.92755 -38.31490 -34.36024 -32.87047 -31.75147 -30.36915 -29.17121 -25.38470 -24.50588 -22.61707 -21.33977 -20.95580 -17.61898 -17.18608 -16.62878 -16.04772 -15.74310 -15.61277 -15.49606 -15.03403 -14.17134 -13.94715 -13.42452 -13.15126 -12.88069 -12.69176 -12.26483 -12.10050 -11.93977 -11.42282 -11.12917 -10.85150 -10.59160 -9.99902 -9.78957 -9.38149 -8.98398 -8.80870 -8.68329 -8.54727 -6.28027 -4.40280 1.21389 1.29109 3.28533 3.33319 3.40371 3.62401 4.17076 4.26290 4.34954 4.57573 4.90163 4.94150 5.22596 5.35289 5.40235 5.51540 5.73055 5.75435 5.87622 5.92247 6.10751 6.14577 6.18828 6.34642 6.44986 6.65979 6.97270 6.98248 7.41033 7.92075 8.21444 8.69642 9.32534 10.81817 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.035873 B = 0.007821 C = 0.006609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.339304 B = 3579.302289 C = 4235.654234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.088 3.912 3 Si 0.895 3.105 4 H -0.270 1.270 5 H -0.294 1.294 6 H -0.263 1.263 7 C -0.529 4.529 8 H 0.085 0.915 9 C 0.146 3.854 10 H 0.049 0.951 11 C 0.032 3.968 12 O -0.390 6.390 13 C 0.270 3.730 14 H 0.086 0.914 15 C -0.071 4.071 16 C -0.099 4.099 17 C -0.098 4.098 18 C -0.154 4.154 19 C 0.086 3.914 20 F -0.144 7.144 21 C -0.130 4.130 22 O -0.387 6.387 23 H 0.269 0.731 24 H 0.096 0.904 25 H 0.073 0.927 26 H 0.139 0.861 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.874 1.333 -2.701 14.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.118 4.118 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.221 1.221 6 H -0.188 1.188 7 C -0.566 4.566 8 H 0.103 0.897 9 C 0.091 3.909 10 H 0.066 0.934 11 C -0.043 4.043 12 O -0.311 6.311 13 C 0.174 3.826 14 H 0.103 0.897 15 C -0.072 4.072 16 C -0.117 4.117 17 C -0.117 4.117 18 C -0.173 4.173 19 C 0.067 3.933 20 F -0.123 7.123 21 C -0.149 4.149 22 O -0.309 6.309 23 H 0.079 0.921 24 H 0.114 0.886 25 H 0.091 0.909 26 H 0.157 0.843 27 H 0.150 0.850 28 H 0.150 0.850 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 13.867 1.479 -2.770 14.218 hybrid contribution 0.486 0.684 -0.109 0.846 sum 14.353 2.163 -2.879 14.798 Atomic orbital electron populations 1.69905 1.06559 1.27784 1.47826 1.25027 0.94746 0.99816 0.92239 0.86505 0.79833 0.82269 0.79086 1.19552 1.22104 1.18783 1.20894 0.86930 0.95363 1.53376 0.89712 1.21920 0.96167 0.87887 0.84918 0.93366 1.24420 0.82231 0.99410 0.98280 1.89107 1.32346 1.50281 1.59377 1.22425 0.84608 0.81764 0.93792 0.89681 1.20214 0.94411 0.94994 0.97574 1.21311 0.99623 0.93313 0.97471 1.21033 0.91621 1.00179 0.98820 1.21111 0.99417 0.93925 1.02847 1.17599 0.81063 0.92770 1.01844 1.91470 1.44508 1.87631 1.88669 1.20889 0.91215 1.00463 1.02374 1.89010 1.43158 1.52168 1.46554 0.92136 0.88586 0.90851 0.84290 0.84989 0.85019 0.84591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.03 13.96 55.43 0.77 -25.26 15 2 C 0.09 2.45 5.47 -17.82 -0.10 2.36 15 3 Si 0.90 21.66 26.06 -169.99 -4.43 17.23 15 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 15 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 15 6 H -0.26 -6.08 6.60 56.52 0.37 -5.71 15 7 C -0.53 -14.31 9.41 -34.44 -0.32 -14.63 15 8 H 0.08 2.42 8.02 -52.49 -0.42 1.99 15 9 C 0.15 3.37 2.88 -26.87 -0.08 3.30 15 10 H 0.05 1.13 7.36 -51.93 -0.38 0.75 15 11 C 0.03 0.63 7.37 38.17 0.28 0.91 15 12 O -0.39 -7.53 11.23 -59.04 -0.66 -8.20 15 13 C 0.27 5.18 4.31 36.01 0.16 5.33 15 14 H 0.09 1.51 8.14 -51.93 -0.42 1.09 15 15 C -0.07 -1.23 5.56 -104.63 -0.58 -1.82 15 16 C -0.10 -1.67 9.38 -39.57 -0.37 -2.04 15 17 C -0.10 -1.35 10.04 -39.59 -0.40 -1.75 15 18 C -0.15 -2.00 10.03 -39.52 -0.40 -2.40 15 19 C 0.09 1.24 7.30 -39.42 -0.29 0.96 15 20 F -0.14 -2.04 17.27 2.25 0.04 -2.00 15 21 C -0.13 -2.01 9.61 -39.52 -0.38 -2.39 15 22 O -0.39 -8.76 7.30 -59.04 -0.43 -9.19 15 23 H 0.27 7.40 8.31 -40.82 -0.34 7.06 15 24 H 0.10 1.66 8.14 -51.93 -0.42 1.24 15 25 H 0.07 1.41 8.04 -51.93 -0.42 1.00 15 26 H 0.14 2.58 6.74 -52.49 -0.35 2.23 15 27 H 0.13 1.44 8.06 -52.49 -0.42 1.02 15 28 H 0.13 1.35 8.06 -52.49 -0.42 0.93 15 29 H 0.14 1.91 8.06 -52.49 -0.42 1.49 15 LS Contribution 256.92 15.07 3.87 3.87 Total: -1.00 -29.22 256.92 -6.17 -35.39 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -2.85 Total: 0.32 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -2.48 Total: -12.16 kcal Atomic # 7 Polarization: -26.03 SS G_CDS: 0.77 Total: -25.26 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -1.09 Total: -17.39 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.43 Total: 17.23 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.22 -6.17 -35.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258829322.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.944 kcal (2) G-P(sol) polarization free energy of solvation -29.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds