Wall clock time and date at job start Mon Mar 30 2020 06:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35928 * 116.99537 * 2 1 4 4 C 1.38831 * 119.97113 * 0.02562 * 3 2 1 5 5 C 1.37956 * 120.04103 * 179.97438 * 4 3 2 6 6 C 1.39130 * 119.96326 * 0.25517 * 5 4 3 7 7 S 1.76204 * 120.03772 * 179.74364 * 6 5 4 8 8 C 1.76199 * 99.99783 * 6.93862 * 7 6 5 9 9 H 1.08009 * 120.00194 * 5.67296 * 8 7 6 10 10 C 1.38679 * 120.00123 * 185.67639 * 8 7 6 11 11 N 1.31662 * 120.00295 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 119.99955 * 359.97438 * 10 8 7 13 13 H 1.48507 * 109.47033 * 90.00256 * 12 10 8 14 14 H 1.48500 * 109.47516 * 209.99919 * 12 10 8 15 15 H 1.48498 * 109.47333 * 330.00667 * 12 10 8 16 16 C 1.39089 * 119.92636 * 359.49000 * 6 5 4 17 17 C 1.50708 * 120.01707 * 180.26966 * 16 6 5 18 18 C 1.38004 * 119.96714 * 0.51253 * 16 6 5 19 19 C 1.50691 * 119.98321 * 179.72239 * 18 16 6 20 20 H 1.09002 * 109.46997 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47012 * 299.99248 * 1 2 3 22 22 H 1.08996 * 109.47738 * 59.99616 * 1 2 3 23 23 H 1.08007 * 119.97534 * 359.95527 * 4 3 2 24 24 H 1.08003 * 120.02006 * 179.97438 * 5 4 3 25 25 H 0.96997 * 119.99770 * 180.02562 * 11 10 8 26 26 H 1.08993 * 109.47408 * 270.23485 * 17 16 6 27 27 H 1.09003 * 109.46838 * 30.23815 * 17 16 6 28 28 H 1.09004 * 109.46750 * 150.23998 * 17 16 6 29 29 H 1.08997 * 109.47162 * 270.01760 * 19 18 16 30 30 H 1.09005 * 109.47662 * 30.01927 * 19 18 16 31 31 H 1.09003 * 109.47257 * 150.01795 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2893 2.3751 0.0005 5 6 1.9140 3.6051 0.0011 6 6 3.3033 3.6788 -0.0043 7 16 4.1032 5.2488 -0.0104 8 6 2.7081 6.3038 0.2023 9 1 1.7318 5.8784 0.3824 10 6 2.8636 7.6804 0.1385 11 7 1.8212 8.4687 0.2980 12 14 4.5521 8.4162 -0.1723 13 1 4.7618 8.5741 -1.6340 14 1 4.6427 9.7437 0.4869 15 1 5.5943 7.5157 0.3827 16 6 4.0601 2.5119 0.0005 17 6 5.5652 2.5894 0.0009 18 6 3.4322 1.2830 -0.0001 19 6 4.2518 0.0185 -0.0011 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5137 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 0.2107 2.3175 0.0002 24 1 1.3249 4.5103 0.0011 25 1 1.9299 9.4315 0.2529 26 1 5.9283 2.6083 -1.0266 27 1 5.8821 3.4968 0.5151 28 1 5.9737 1.7191 0.5145 29 1 4.4493 -0.2856 -1.0290 30 1 5.1963 0.1971 0.5128 31 1 3.7026 -0.7709 0.5121 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258957570.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:42 Heat of formation + Delta-G solvation = -25.386349 kcal Electronic energy + Delta-G solvation = -14494.265790 eV Core-core repulsion = 12059.882201 eV Total energy + Delta-G solvation = -2434.383589 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.72714 -37.17457 -33.08116 -32.53628 -30.90282 -27.38533 -27.24377 -25.86963 -25.32528 -21.49027 -20.38998 -17.99701 -17.14789 -16.03009 -15.50777 -15.46843 -15.13185 -14.02264 -13.71857 -13.57713 -13.12315 -12.58899 -12.46348 -12.31113 -12.00639 -11.72683 -11.61055 -11.37046 -11.25045 -11.16558 -10.73911 -10.55850 -10.32607 -9.71412 -9.25347 -8.77868 -8.35708 -8.05222 -6.60798 -6.45745 -4.18790 1.89639 1.97788 2.88455 3.17785 3.29045 3.46779 3.65163 4.13044 4.24520 4.58716 4.95012 5.18356 5.26205 5.30767 5.36362 5.56106 5.57118 5.75005 5.78341 5.89976 5.99824 6.09356 6.23436 6.37012 6.38129 6.67536 6.88131 6.98375 7.17431 7.28349 7.77747 7.85584 8.34572 8.97384 10.62045 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.035197 B = 0.007308 C = 0.006096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.333744 B = 3830.284064 C = 4591.735494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.322 6.322 3 C 0.089 3.911 4 C -0.189 4.189 5 C -0.098 4.098 6 C -0.090 4.090 7 S -0.046 6.046 8 C -0.538 4.538 9 H 0.106 0.894 10 C 0.098 3.902 11 N -0.869 5.869 12 Si 0.857 3.143 13 H -0.264 1.264 14 H -0.271 1.271 15 H -0.239 1.239 16 C -0.062 4.062 17 C -0.112 4.112 18 C -0.106 4.106 19 C -0.100 4.100 20 H 0.091 0.909 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.119 0.881 24 H 0.145 0.855 25 H 0.274 0.726 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.112 -13.232 -0.797 13.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.236 6.236 3 C 0.041 3.959 4 C -0.210 4.210 5 C -0.122 4.122 6 C -0.205 4.205 7 S 0.205 5.795 8 C -0.684 4.684 9 H 0.124 0.876 10 C -0.112 4.112 11 N -0.504 5.504 12 Si 0.681 3.319 13 H -0.189 1.189 14 H -0.196 1.196 15 H -0.163 1.163 16 C -0.070 4.070 17 C -0.169 4.169 18 C -0.108 4.108 19 C -0.156 4.156 20 H 0.110 0.890 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.137 0.863 24 H 0.162 0.838 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.351 -12.678 -0.894 13.144 hybrid contribution -1.295 0.493 -0.029 1.386 sum 2.056 -12.185 -0.922 12.392 Atomic orbital electron populations 1.22920 0.79473 1.02908 1.01181 1.85969 1.20409 1.27468 1.89775 1.18617 0.91575 0.83650 1.02073 1.21052 0.99126 0.92241 1.08561 1.21389 0.94062 0.97835 0.98946 1.21918 0.96218 0.98004 1.04334 1.82782 1.15272 0.94805 1.86670 1.22758 0.95429 0.93156 1.57084 0.87627 1.24801 0.97402 0.96005 0.93020 1.69936 1.29644 1.04710 1.46111 0.86772 0.84538 0.80487 0.80084 1.18913 1.19584 1.16317 1.19143 0.95397 0.90379 1.02068 1.20784 0.91223 1.02717 1.02187 1.18772 0.90295 0.94894 1.06858 1.20587 0.98836 0.94588 1.01625 0.89016 0.93071 0.93065 0.86323 0.83780 0.91609 0.91349 0.90729 0.91565 0.92014 0.91681 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.32 -5.01 9.53 -19.51 -0.19 -5.20 16 3 C 0.09 1.59 6.66 -39.16 -0.26 1.32 16 4 C -0.19 -3.52 9.03 -39.47 -0.36 -3.88 16 5 C -0.10 -2.12 9.22 -39.35 -0.36 -2.48 16 6 C -0.09 -1.99 6.10 -38.93 -0.24 -2.23 16 7 S -0.05 -1.11 17.83 -107.50 -1.92 -3.03 16 8 C -0.54 -14.93 9.53 30.90 0.29 -14.64 16 9 H 0.11 3.07 5.20 -52.48 -0.27 2.80 16 10 C 0.10 2.73 5.50 -17.46 -0.10 2.63 16 11 N -0.87 -25.24 13.97 55.48 0.78 -24.47 16 12 Si 0.86 20.37 27.73 -169.99 -4.71 15.65 16 13 H -0.26 -6.20 7.11 56.52 0.40 -5.80 16 14 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 15 H -0.24 -5.50 6.74 56.52 0.38 -5.12 16 16 C -0.06 -1.18 5.90 -104.39 -0.62 -1.79 16 17 C -0.11 -1.79 9.16 36.01 0.33 -1.46 16 18 C -0.11 -1.87 5.89 -104.51 -0.62 -2.48 16 19 C -0.10 -1.39 9.38 36.00 0.34 -1.05 16 20 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 21 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 22 H 0.05 0.56 7.66 -51.93 -0.40 0.17 16 23 H 0.12 1.90 6.29 -52.48 -0.33 1.57 16 24 H 0.14 3.38 5.02 -52.48 -0.26 3.11 16 25 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.07 1.26 6.79 -51.93 -0.35 0.90 16 28 H 0.07 0.88 5.94 -51.93 -0.31 0.57 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.80 5.94 -51.93 -0.31 0.49 16 31 H 0.06 0.85 7.52 -51.93 -0.39 0.46 16 LS Contribution 266.95 15.07 4.02 4.02 Total: -1.00 -29.85 266.95 -6.06 -35.91 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -3.45 Total: 1.83 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: -0.59 Total: -24.72 kcal Atomic # 7 Polarization: -25.24 SS G_CDS: 0.78 Total: -24.47 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.19 Total: -5.20 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.71 Total: 15.65 kcal Atomic # 16 Polarization: -1.11 SS G_CDS: -1.92 Total: -3.03 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.85 -6.06 -35.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258957570.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.522 kcal (2) G-P(sol) polarization free energy of solvation -29.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds