Wall clock time and date at job start Mon Mar 30 2020 06:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35931 * 117.00477 * 2 1 4 4 C 1.38836 * 119.95773 * 359.97438 * 3 2 1 5 5 C 1.37964 * 120.03367 * 179.97438 * 4 3 2 6 6 C 1.50701 * 120.01807 * 179.72614 * 5 4 3 7 7 C 1.39133 * 119.96382 * 359.97438 * 5 4 3 8 8 S 1.76205 * 120.03434 * 180.02562 * 7 5 4 9 9 C 1.76202 * 99.99710 * 186.96113 * 8 7 5 10 10 H 1.07999 * 120.00113 * 5.67736 * 9 8 7 11 11 C 1.38684 * 119.99754 * 185.68004 * 9 8 7 12 12 N 1.31656 * 119.99989 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99985 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47215 * 59.99871 * 13 11 9 15 15 H 1.48496 * 109.47356 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47068 * 300.00258 * 13 11 9 17 17 C 1.39090 * 119.92873 * 0.02562 * 7 5 4 18 18 C 1.38000 * 119.96635 * 0.02562 * 17 7 5 19 19 C 1.50702 * 119.98465 * 179.97438 * 18 17 7 20 20 H 1.09005 * 109.47091 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47333 * 299.99987 * 1 2 3 22 22 H 1.09004 * 109.46688 * 60.00638 * 1 2 3 23 23 H 1.07997 * 119.98682 * 359.95981 * 4 3 2 24 24 H 1.08995 * 109.47424 * 89.99770 * 6 5 4 25 25 H 1.08999 * 109.46851 * 210.00146 * 6 5 4 26 26 H 1.08996 * 109.46876 * 329.99427 * 6 5 4 27 27 H 0.96999 * 119.99949 * 180.02562 * 12 11 9 28 28 H 1.08003 * 120.01959 * 179.97438 * 17 7 5 29 29 H 1.09000 * 109.46454 * 270.01517 * 19 18 17 30 30 H 1.09001 * 109.47025 * 30.01452 * 19 18 17 31 31 H 1.09003 * 109.47170 * 150.02017 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2111 0.0000 4 6 1.2893 2.3750 -0.0005 5 6 1.9141 3.6050 0.0000 6 6 1.0922 4.8681 -0.0068 7 6 3.3035 3.6787 0.0016 8 16 4.1034 5.2487 0.0030 9 6 5.7773 4.7393 -0.2056 10 1 6.0072 3.6989 -0.3815 11 6 6.7995 5.6746 -0.1437 12 7 6.5192 6.9429 0.0713 13 14 8.5741 5.1345 -0.3641 14 1 8.7392 4.5105 -1.7014 15 1 9.4680 6.3151 -0.2544 16 1 8.9258 4.1484 0.6891 17 6 4.0603 2.5117 0.0021 18 6 3.4323 1.2829 0.0005 19 6 4.2519 0.0182 0.0005 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 0.2109 2.3175 -0.0016 24 1 0.8888 5.1749 1.0191 25 1 1.6426 5.6570 -0.5196 26 1 0.1508 4.6862 -0.5251 27 1 7.2341 7.5970 0.1141 28 1 5.1389 2.5672 0.0030 29 1 4.4508 -0.2857 -1.0272 30 1 5.1956 0.1969 0.5158 31 1 3.7019 -0.7712 0.5129 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259011760.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:02 Heat of formation + Delta-G solvation = -30.046051 kcal Electronic energy + Delta-G solvation = -14459.821532 eV Core-core repulsion = 12025.235883 eV Total energy + Delta-G solvation = -2434.585649 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.61765 -36.96532 -33.30403 -32.62171 -29.68832 -28.70731 -27.26950 -25.69675 -24.16933 -21.72962 -20.67372 -17.74938 -17.00995 -15.82506 -15.46127 -15.42473 -15.08574 -13.78025 -13.50879 -13.35838 -13.34787 -12.78432 -12.35996 -12.27295 -11.93060 -11.55139 -11.46107 -11.29936 -11.18657 -11.01008 -10.62683 -10.54836 -10.23588 -9.82411 -9.31367 -8.57083 -8.28524 -7.86981 -6.44633 -6.35197 -4.13521 1.97880 2.07445 3.12964 3.15998 3.19920 3.44942 3.72287 4.07215 4.31808 4.97383 5.13981 5.20112 5.30154 5.32390 5.41507 5.55325 5.72976 5.79047 5.92953 6.07342 6.15410 6.18775 6.22087 6.40205 6.46226 6.85597 6.93170 6.95487 7.27979 7.36132 7.55840 7.93403 8.19819 9.03836 10.62658 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.032123 B = 0.007365 C = 0.006033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.449389 B = 3800.853492 C = 4640.144272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.322 6.322 3 C 0.080 3.920 4 C -0.185 4.185 5 C -0.071 4.071 6 C -0.109 4.109 7 C -0.110 4.110 8 S 0.043 5.957 9 C -0.551 4.551 10 H 0.091 0.909 11 C 0.078 3.922 12 N -0.866 5.866 13 Si 0.921 3.079 14 H -0.270 1.270 15 H -0.281 1.281 16 H -0.270 1.270 17 C -0.105 4.105 18 C -0.104 4.104 19 C -0.099 4.099 20 H 0.090 0.910 21 H 0.049 0.951 22 H 0.049 0.951 23 H 0.117 0.883 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.056 0.944 27 H 0.273 0.727 28 H 0.142 0.858 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.701 -9.035 -0.076 12.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.237 6.237 3 C 0.031 3.969 4 C -0.205 4.205 5 C -0.079 4.079 6 C -0.166 4.166 7 C -0.225 4.225 8 S 0.297 5.703 9 C -0.698 4.698 10 H 0.108 0.892 11 C -0.132 4.132 12 N -0.500 5.500 13 Si 0.746 3.254 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.195 1.195 17 C -0.131 4.131 18 C -0.106 4.106 19 C -0.156 4.156 20 H 0.108 0.892 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.135 0.865 24 H 0.084 0.916 25 H 0.094 0.906 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.159 0.841 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.816 -7.660 0.055 11.679 hybrid contribution 1.275 -1.394 -0.224 1.902 sum -7.541 -9.054 -0.169 11.785 Atomic orbital electron populations 1.22883 0.79805 1.02778 1.00900 1.85982 1.20134 1.27594 1.89966 1.18567 0.91564 0.83494 1.03266 1.20782 0.98603 0.91788 1.09308 1.19226 0.92142 0.94288 1.02285 1.20698 0.98432 0.95496 1.01978 1.22518 0.95676 1.01196 1.03158 1.83312 1.02621 1.00065 1.84286 1.23300 0.91412 0.97877 1.57258 0.89177 1.25063 1.00067 0.94468 0.93602 1.69998 1.33992 1.01139 1.44898 0.86166 0.81527 0.78399 0.79276 1.19554 1.20621 1.19550 1.21235 1.00752 0.89990 1.01105 1.19095 0.90312 0.95617 1.05594 1.20541 0.98718 0.94772 1.01574 0.89159 0.93269 0.93252 0.86488 0.91573 0.90551 0.92491 0.91738 0.84053 0.92071 0.92068 0.91848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.35 16 2 O -0.32 -5.14 9.53 -19.52 -0.19 -5.32 16 3 C 0.08 1.45 6.66 -39.16 -0.26 1.19 16 4 C -0.18 -3.26 8.68 -39.46 -0.34 -3.61 16 5 C -0.07 -1.39 5.90 -104.39 -0.62 -2.01 16 6 C -0.11 -1.84 9.57 36.01 0.34 -1.49 16 7 C -0.11 -2.49 6.10 -38.93 -0.24 -2.73 16 8 S 0.04 1.10 19.85 -107.50 -2.13 -1.04 16 9 C -0.55 -15.05 8.99 30.90 0.28 -14.77 16 10 H 0.09 2.36 4.97 -52.49 -0.26 2.10 16 11 C 0.08 2.11 5.49 -17.46 -0.10 2.02 16 12 N -0.87 -24.55 13.22 55.48 0.73 -23.81 16 13 Si 0.92 20.66 29.55 -169.99 -5.02 15.64 16 14 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 15 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 16 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 17 C -0.11 -2.30 8.87 -39.35 -0.35 -2.65 16 18 C -0.10 -2.00 5.89 -104.50 -0.62 -2.62 16 19 C -0.10 -1.59 9.79 36.01 0.35 -1.24 16 20 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 21 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 22 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 23 H 0.12 1.71 6.29 -52.49 -0.33 1.38 16 24 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.08 1.38 6.78 -51.93 -0.35 1.03 16 26 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 27 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.14 3.19 5.02 -52.48 -0.26 2.93 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 31 H 0.06 0.95 7.52 -51.93 -0.39 0.56 16 LS Contribution 274.03 15.07 4.13 4.13 Total: -1.00 -29.72 274.03 -6.67 -36.39 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -3.63 Total: 0.58 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: -0.55 Total: -26.56 kcal Atomic # 7 Polarization: -24.55 SS G_CDS: 0.73 Total: -23.81 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -0.19 Total: -5.32 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -2.13 Total: -1.04 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.72 -6.67 -36.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259011760.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.343 kcal (2) G-P(sol) polarization free energy of solvation -29.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds