Wall clock time and date at job start Mon Mar 30 2020 05:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00462 * 2 1 4 4 H 1.48503 * 109.47043 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47170 * 299.99764 * 3 2 1 6 6 H 1.48493 * 109.46929 * 60.00087 * 3 2 1 7 7 C 1.37883 * 119.99203 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99745 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00189 * 0.02562 * 7 2 1 10 10 F 1.39901 * 109.47096 * 60.00296 * 9 7 2 11 11 F 1.39897 * 109.47267 * 300.00022 * 9 7 2 12 12 C 1.50702 * 109.47039 * 180.02562 * 9 7 2 13 13 C 1.38771 * 119.66555 * 89.97782 * 12 9 7 14 14 C 1.37854 * 120.45163 * 179.97438 * 13 12 9 15 15 C 1.38831 * 119.68863 * 0.02562 * 14 13 12 16 16 N 1.38060 * 134.14256 * 179.97438 * 15 14 13 17 17 H 0.97002 * 126.34840 * 0.05788 * 16 15 14 18 18 C 1.36036 * 107.30408 * 180.02562 * 16 15 14 19 19 N 1.30107 * 110.09733 * 0.24628 * 18 16 15 20 20 C 1.35787 * 109.64386 * 359.59823 * 19 18 16 21 21 C 1.36602 * 119.66519 * 270.00309 * 12 9 7 22 22 H 0.97009 * 119.99222 * 0.02562 * 1 2 3 23 23 H 1.08003 * 119.77759 * 359.97438 * 13 12 9 24 24 H 1.08006 * 120.15752 * 180.02562 * 14 13 12 25 25 H 1.08002 * 124.94737 * 179.97438 * 18 16 15 26 26 H 1.07998 * 120.05565 * 0.02562 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3461 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1943 0.0010 9 6 1.2507 -2.4992 0.0005 10 9 0.4469 -2.5735 -1.1421 11 9 0.4460 -2.5730 1.1425 12 6 2.2299 -3.6448 0.0018 13 6 2.6756 -4.1660 1.2082 14 6 3.5709 -5.2141 1.2283 15 6 4.0289 -5.7502 0.0324 16 7 4.9007 -6.7701 -0.2927 17 1 5.3828 -7.3352 0.3312 18 6 4.9579 -6.8363 -1.6503 19 7 4.1885 -5.9277 -2.1750 20 6 3.5778 -5.2217 -1.1888 21 6 2.6702 -4.1592 -1.1846 22 1 -0.4849 0.8402 -0.0004 23 1 2.3187 -3.7477 2.1378 24 1 3.9143 -5.6164 2.1700 25 1 5.5581 -7.5377 -2.2108 26 1 2.3175 -3.7454 -2.1177 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259026464.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:02 Heat of formation + Delta-G solvation = -32.869923 kcal Electronic energy + Delta-G solvation = -16390.705915 eV Core-core repulsion = 13298.617084 eV Total energy + Delta-G solvation = -3092.088831 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -46.89320 -44.92694 -41.77771 -36.99640 -32.93266 -32.77063 -30.33427 -29.15413 -26.67707 -23.53571 -22.56820 -21.37785 -20.37246 -17.90893 -17.20270 -16.67365 -15.98002 -15.20878 -14.93828 -14.68318 -14.08064 -13.84579 -13.57910 -13.31822 -12.42245 -11.84104 -11.74722 -11.61420 -11.46690 -11.10980 -11.01073 -10.93235 -10.48794 -10.41580 -10.10139 -9.73218 -8.97986 -8.82681 -7.96140 -7.77947 -6.25241 -4.52355 1.33429 1.87714 3.06266 3.08187 3.22322 3.29081 3.34623 4.20000 4.31878 4.45766 4.88685 5.06428 5.16564 5.43301 5.61478 5.69943 5.92665 6.01097 6.40875 6.54332 6.72777 6.89085 6.89948 7.18983 7.48463 7.53467 7.55790 7.67410 8.08569 8.58550 9.28217 10.79226 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.036943 B = 0.007339 C = 0.007106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.752634 B = 3814.144093 C = 3939.402412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.085 3.915 3 Si 0.911 3.089 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.585 4.585 8 H 0.080 0.920 9 C 0.442 3.558 10 F -0.218 7.218 11 F -0.218 7.218 12 C -0.112 4.112 13 C -0.064 4.064 14 C -0.128 4.128 15 C 0.044 3.956 16 N -0.607 5.607 17 H 0.419 0.581 18 C 0.244 3.756 19 N -0.492 5.492 20 C 0.039 3.961 21 C -0.038 4.038 22 H 0.270 0.730 23 H 0.137 0.863 24 H 0.121 0.879 25 H 0.212 0.788 26 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.075 -11.301 1.566 14.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.124 4.124 3 Si 0.737 3.263 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.622 4.622 8 H 0.098 0.902 9 C 0.406 3.594 10 F -0.199 7.199 11 F -0.199 7.199 12 C -0.115 4.115 13 C -0.084 4.084 14 C -0.149 4.149 15 C -0.065 4.065 16 N -0.220 5.220 17 H 0.257 0.743 18 C -0.043 4.043 19 N -0.212 5.212 20 C -0.078 4.078 21 C -0.058 4.058 22 H 0.080 0.920 23 H 0.155 0.845 24 H 0.139 0.861 25 H 0.228 0.772 26 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.668 -10.981 0.653 14.005 hybrid contribution 0.734 0.309 1.108 1.364 sum 9.401 -10.673 1.760 14.332 Atomic orbital electron populations 1.70059 1.06255 1.27768 1.44537 1.25135 0.94960 1.00104 0.92210 0.86235 0.80144 0.81955 0.77954 1.19165 1.20369 1.20423 1.21518 0.94091 0.88446 1.58143 0.90154 1.16940 0.79570 0.92080 0.70842 1.92883 1.77016 1.97365 1.52601 1.92870 1.76996 1.97375 1.52695 1.20411 1.00644 0.97275 0.93166 1.20808 0.95033 0.94069 0.98446 1.19814 1.01413 0.99386 0.94277 1.18915 0.97028 0.93488 0.97098 1.43072 1.39676 1.30711 1.08536 0.74316 1.25221 0.99557 0.99157 0.80364 1.70377 1.11346 1.07705 1.31745 1.18944 1.01274 0.99389 0.88160 1.19826 0.94221 0.92783 0.98936 0.92048 0.84491 0.86127 0.77201 0.84686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.22 12.62 55.43 0.70 -24.52 15 2 C 0.09 2.39 5.39 -17.82 -0.10 2.30 15 3 Si 0.91 21.10 29.54 -169.99 -5.02 16.08 15 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 15 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 7 C -0.58 -16.44 8.59 -34.44 -0.30 -16.74 15 8 H 0.08 2.19 7.74 -52.49 -0.41 1.78 15 9 C 0.44 11.93 1.66 -29.03 -0.05 11.88 15 10 F -0.22 -6.23 15.71 2.25 0.04 -6.20 15 11 F -0.22 -6.10 15.72 2.25 0.04 -6.06 15 12 C -0.11 -2.54 4.89 -105.01 -0.51 -3.05 15 13 C -0.06 -1.24 9.37 -39.52 -0.37 -1.61 15 14 C -0.13 -2.04 10.07 -39.50 -0.40 -2.44 15 15 C 0.04 0.71 7.31 -83.99 -0.61 0.10 15 16 N -0.61 -7.01 6.23 -11.76 -0.07 -7.08 15 17 H 0.42 3.00 8.96 -40.82 -0.37 2.63 15 18 C 0.24 2.93 12.97 -89.79 -1.16 1.77 15 19 N -0.49 -8.53 11.27 -12.05 -0.14 -8.66 15 20 C 0.04 0.76 7.23 -84.70 -0.61 0.14 15 21 C -0.04 -0.83 9.38 -39.61 -0.37 -1.20 15 22 H 0.27 7.37 8.31 -40.82 -0.34 7.03 15 23 H 0.14 2.54 7.58 -52.48 -0.40 2.14 15 24 H 0.12 1.49 8.06 -52.48 -0.42 1.06 15 25 H 0.21 1.35 8.06 -52.49 -0.42 0.92 15 26 H 0.14 3.00 7.55 -52.49 -0.40 2.60 15 LS Contribution 245.53 15.07 3.70 3.70 Total: -1.00 -34.14 245.53 -6.79 -40.93 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -1.55 Total: 0.67 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -4.48 Total: -8.86 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.49 Total: -40.26 kcal Atomic # 9 Polarization: -12.33 SS G_CDS: 0.07 Total: -12.26 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -34.14 -6.79 -40.93 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259026464.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.058 kcal (2) G-P(sol) polarization free energy of solvation -34.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds