Wall clock time and date at job start Mon Mar 30 2020 05:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00462 * 2 1 4 4 H 1.48503 * 109.47043 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47170 * 299.99764 * 3 2 1 6 6 H 1.48493 * 109.46929 * 60.00087 * 3 2 1 7 7 C 1.37883 * 119.99203 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99745 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00189 * 0.02562 * 7 2 1 10 10 F 1.39901 * 109.47096 * 60.00296 * 9 7 2 11 11 F 1.39897 * 109.47267 * 300.00022 * 9 7 2 12 12 C 1.50702 * 109.47039 * 180.02562 * 9 7 2 13 13 C 1.38771 * 119.66555 * 89.97782 * 12 9 7 14 14 C 1.37854 * 120.45163 * 179.97438 * 13 12 9 15 15 C 1.38831 * 119.68863 * 0.02562 * 14 13 12 16 16 N 1.38060 * 134.14256 * 179.97438 * 15 14 13 17 17 H 0.97002 * 126.34840 * 0.05788 * 16 15 14 18 18 C 1.36036 * 107.30408 * 180.02562 * 16 15 14 19 19 N 1.30107 * 110.09733 * 0.24628 * 18 16 15 20 20 C 1.35787 * 109.64386 * 359.59823 * 19 18 16 21 21 C 1.36602 * 119.66519 * 270.00309 * 12 9 7 22 22 H 0.97009 * 119.99222 * 0.02562 * 1 2 3 23 23 H 1.08003 * 119.77759 * 359.97438 * 13 12 9 24 24 H 1.08006 * 120.15752 * 180.02562 * 14 13 12 25 25 H 1.08002 * 124.94737 * 179.97438 * 18 16 15 26 26 H 1.07998 * 120.05565 * 0.02562 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3461 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1943 0.0010 9 6 1.2507 -2.4992 0.0005 10 9 0.4469 -2.5735 -1.1421 11 9 0.4460 -2.5730 1.1425 12 6 2.2299 -3.6448 0.0018 13 6 2.6756 -4.1660 1.2082 14 6 3.5709 -5.2141 1.2283 15 6 4.0289 -5.7502 0.0324 16 7 4.9007 -6.7701 -0.2927 17 1 5.3828 -7.3352 0.3312 18 6 4.9579 -6.8363 -1.6503 19 7 4.1885 -5.9277 -2.1750 20 6 3.5778 -5.2217 -1.1888 21 6 2.6702 -4.1592 -1.1846 22 1 -0.4849 0.8402 -0.0004 23 1 2.3187 -3.7477 2.1378 24 1 3.9143 -5.6164 2.1700 25 1 5.5581 -7.5377 -2.2108 26 1 2.3175 -3.7454 -2.1177 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259026464.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:02 Heat of formation + Delta-G solvation = -55.493566 kcal Electronic energy + Delta-G solvation = -16391.686950 eV Core-core repulsion = 13298.617084 eV Total energy + Delta-G solvation = -3093.069866 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.05370 -47.11588 -42.99261 -38.42535 -34.93602 -34.12130 -31.88494 -30.53806 -28.60024 -25.28304 -23.91934 -22.66671 -21.92343 -19.35515 -19.11889 -18.23160 -17.70599 -17.07246 -16.70854 -16.14244 -15.81017 -15.53865 -14.91417 -14.66130 -13.96740 -13.93501 -13.88234 -13.54020 -13.44575 -12.86256 -12.68269 -12.59023 -12.26879 -12.12168 -11.71980 -11.06688 -10.94338 -10.90596 -9.36907 -9.15245 -8.37321 -6.74600 0.01421 0.40790 1.38481 1.40383 1.54965 1.91742 2.06144 2.29632 2.81192 2.91755 3.18824 3.57118 3.75734 4.23272 4.37186 4.41820 4.44169 4.48947 4.73781 4.99803 5.10882 5.32551 5.39758 5.46599 5.52175 5.76166 5.83072 6.41122 6.58860 6.95010 7.11021 8.68166 Molecular weight = 238.06amu Principal moments of inertia in cm(-1) A = 0.036943 B = 0.007339 C = 0.007106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.752634 B = 3814.144093 C = 3939.402412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.029 3.971 3 Si 0.987 3.013 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.267 1.267 7 C -0.603 4.603 8 H 0.081 0.919 9 C 0.424 3.576 10 F -0.237 7.237 11 F -0.231 7.231 12 C -0.130 4.130 13 C -0.091 4.091 14 C -0.095 4.095 15 C 0.043 3.957 16 N -0.583 5.583 17 H 0.445 0.555 18 C 0.283 3.717 19 N -0.548 5.548 20 C 0.021 3.979 21 C -0.066 4.066 22 H 0.275 0.725 23 H 0.137 0.863 24 H 0.170 0.830 25 H 0.273 0.727 26 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.188 -13.120 2.367 18.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.176 4.176 3 Si 0.809 3.191 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.192 1.192 7 C -0.640 4.640 8 H 0.099 0.901 9 C 0.388 3.612 10 F -0.219 7.219 11 F -0.212 7.212 12 C -0.134 4.134 13 C -0.110 4.110 14 C -0.115 4.115 15 C -0.068 4.068 16 N -0.197 5.197 17 H 0.289 0.711 18 C -0.004 4.004 19 N -0.269 5.269 20 C -0.096 4.096 21 C -0.086 4.086 22 H 0.084 0.916 23 H 0.155 0.845 24 H 0.187 0.813 25 H 0.288 0.712 26 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 11.809 -12.848 1.484 17.513 hybrid contribution -0.140 0.669 0.794 1.048 sum 11.668 -12.178 2.278 17.019 Atomic orbital electron populations 1.70177 1.08098 1.29096 1.45654 1.26191 0.95866 1.04197 0.91310 0.85088 0.78909 0.76706 0.78430 1.18179 1.19690 1.19179 1.21853 0.94344 0.89597 1.58226 0.90053 1.17330 0.79770 0.94310 0.69757 1.92820 1.77781 1.97573 1.53706 1.92816 1.77561 1.97560 1.53268 1.20056 1.00975 0.97204 0.95132 1.20827 0.97161 0.96093 0.96953 1.20144 0.98399 0.96782 0.96179 1.18957 0.97477 0.94352 0.95984 1.43040 1.38195 1.29317 1.09125 0.71115 1.26433 0.96477 0.96998 0.80472 1.70373 1.13967 1.10053 1.32483 1.18975 1.01067 0.99053 0.90478 1.19612 0.96539 0.94951 0.97484 0.91613 0.84490 0.81285 0.71167 0.87465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.88 12.62 21.45 0.27 -54.61 15 2 C 0.03 1.69 5.39 84.66 0.46 2.15 15 3 Si 0.99 43.98 29.54 68.60 2.03 46.01 15 4 H -0.26 -10.98 7.11 99.48 0.71 -10.28 15 5 H -0.27 -11.74 7.11 99.48 0.71 -11.03 15 6 H -0.27 -11.31 7.11 99.48 0.71 -10.60 15 7 C -0.60 -35.34 8.59 25.60 0.22 -35.12 15 8 H 0.08 4.60 7.74 -2.91 -0.02 4.58 15 9 C 0.42 24.26 1.66 29.10 0.05 24.30 15 10 F -0.24 -14.62 15.71 44.97 0.71 -13.91 15 11 F -0.23 -13.62 15.72 44.97 0.71 -12.92 15 12 C -0.13 -6.23 4.89 -20.12 -0.10 -6.32 15 13 C -0.09 -3.51 9.37 22.31 0.21 -3.30 15 14 C -0.09 -2.76 10.07 22.32 0.22 -2.53 15 15 C 0.04 1.27 7.31 38.86 0.28 1.56 15 16 N -0.58 -10.36 6.23 -191.13 -1.19 -11.55 15 17 H 0.45 3.45 8.96 -92.71 -0.83 2.62 15 18 C 0.28 5.38 12.97 180.06 2.34 7.72 15 19 N -0.55 -17.93 11.27 -192.04 -2.16 -20.10 15 20 C 0.02 0.81 7.23 39.45 0.29 1.09 15 21 C -0.07 -3.02 9.38 22.25 0.21 -2.81 15 22 H 0.27 15.48 8.31 -92.70 -0.77 14.71 15 23 H 0.14 5.16 7.58 -2.91 -0.02 5.14 15 24 H 0.17 3.25 8.06 -2.91 -0.02 3.23 15 25 H 0.27 1.50 8.06 -2.91 -0.02 1.48 15 26 H 0.11 5.27 7.55 -2.91 -0.02 5.25 15 Total: -1.00 -80.20 245.53 4.93 -75.26 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: 0.41 Total: 5.09 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: 4.17 Total: -13.28 kcal Atomic # 7 Polarization: -83.17 SS G_CDS: -3.09 Total: -86.26 kcal Atomic # 9 Polarization: -28.24 SS G_CDS: 1.41 Total: -26.83 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -80.20 4.93 -75.26 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259026464.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.771 kcal (2) G-P(sol) polarization free energy of solvation -80.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds