Wall clock time and date at job start Mon Mar 30 2020 05:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00123 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00183 * 3 2 1 6 6 H 1.48498 * 109.46997 * 149.99994 * 3 2 1 7 7 C 1.37875 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 F 1.39900 * 109.46844 * 60.00682 * 9 7 2 11 11 F 1.39897 * 109.47532 * 300.00408 * 9 7 2 12 12 C 1.50706 * 109.47294 * 180.02562 * 9 7 2 13 13 C 1.33995 * 126.90229 * 0.02974 * 12 9 7 14 14 O 1.34454 * 110.15109 * 179.97438 * 13 12 9 15 15 C 1.34804 * 110.88839 * 0.02562 * 14 13 12 16 16 C 1.38945 * 133.49456 * 179.97438 * 15 14 13 17 17 C 1.37841 * 119.81916 * 179.97438 * 16 15 14 18 18 C 1.38742 * 120.68524 * 0.02562 * 17 16 15 19 19 C 1.36733 * 120.41999 * 359.97192 * 18 17 16 20 20 C 1.39410 * 119.71720 * 359.76658 * 19 18 17 21 21 H 0.96997 * 119.99752 * 359.97438 * 1 2 3 22 22 H 1.07997 * 124.92535 * 359.95633 * 13 12 9 23 23 H 1.08001 * 120.08733 * 359.97438 * 16 15 14 24 24 H 1.08005 * 119.65762 * 179.97438 * 17 16 15 25 25 H 1.08000 * 119.79296 * 180.02562 * 18 17 16 26 26 H 1.07999 * 120.14583 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 9 0.4464 -2.5730 -1.1426 11 9 0.4471 -2.5735 1.1419 12 6 2.2303 -3.6446 -0.0005 13 6 3.5676 -3.5599 0.0000 14 8 4.1097 -4.7904 0.0004 15 6 3.1509 -5.7380 -0.0005 16 6 3.1793 -7.1271 -0.0010 17 6 1.9976 -7.8368 -0.0014 18 6 0.7763 -7.1785 -0.0017 19 6 0.7263 -5.8121 -0.0012 20 6 1.9110 -5.0772 0.0047 21 1 -0.4849 0.8400 0.0004 22 1 4.1287 -2.6371 -0.0001 23 1 4.1246 -7.6494 -0.0011 24 1 2.0227 -8.9166 -0.0022 25 1 -0.1408 -7.7489 -0.0016 26 1 -0.2268 -5.3042 -0.0010 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259050254.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:12 Heat of formation + Delta-G solvation = -94.125009 kcal Electronic energy + Delta-G solvation = -16547.863857 eV Core-core repulsion = 13420.826055 eV Total energy + Delta-G solvation = -3127.037802 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.055 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.03748 -47.11494 -43.40705 -38.80614 -35.25092 -34.13272 -31.48949 -30.86359 -28.55183 -25.41880 -24.20214 -23.22328 -21.27571 -19.48211 -18.59864 -17.78367 -17.70409 -16.97046 -16.94091 -16.73091 -15.96289 -15.79577 -15.05788 -14.70576 -14.09633 -13.93788 -13.74176 -13.59219 -13.25306 -13.19705 -12.83978 -12.82807 -12.31254 -12.23030 -11.94739 -11.17713 -11.00702 -10.94125 -9.63164 -9.22942 -8.41238 -6.78549 -0.05453 0.36846 1.25804 1.40081 1.44465 1.55199 1.77049 2.28027 2.74012 2.93536 3.30419 3.54643 3.82188 4.09120 4.19866 4.30232 4.45201 4.56511 4.68709 4.87009 5.17352 5.23198 5.25495 5.39708 5.41639 5.48706 5.53890 5.72976 6.15882 6.34451 7.07901 8.66612 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.043300 B = 0.007968 C = 0.007024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.500621 B = 3513.284010 C = 3985.289751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.026 3.974 3 Si 0.992 3.008 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.247 1.247 7 C -0.614 4.614 8 H 0.105 0.895 9 C 0.454 3.546 10 F -0.238 7.238 11 F -0.238 7.238 12 C -0.257 4.257 13 C 0.063 3.937 14 O -0.191 6.191 15 C 0.024 3.976 16 C -0.103 4.103 17 C -0.086 4.086 18 C -0.125 4.125 19 C -0.101 4.101 20 C -0.147 4.147 21 H 0.274 0.726 22 H 0.242 0.758 23 H 0.167 0.833 24 H 0.184 0.816 25 H 0.160 0.840 26 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.960 -11.888 0.011 13.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.179 4.179 3 Si 0.813 3.187 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.171 1.171 7 C -0.650 4.650 8 H 0.122 0.878 9 C 0.418 3.582 10 F -0.219 7.219 11 F -0.219 7.219 12 C -0.260 4.260 13 C -0.002 4.002 14 O -0.092 6.092 15 C -0.022 4.022 16 C -0.121 4.121 17 C -0.104 4.104 18 C -0.143 4.143 19 C -0.119 4.119 20 C -0.148 4.148 21 H 0.083 0.917 22 H 0.258 0.742 23 H 0.184 0.816 24 H 0.201 0.799 25 H 0.178 0.822 26 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.004 -11.875 0.016 13.786 hybrid contribution -0.702 1.369 -0.010 1.539 sum 6.302 -10.506 0.005 12.251 Atomic orbital electron populations 1.70193 1.08508 1.29249 1.45411 1.26291 0.95862 1.04649 0.91134 0.85060 0.78789 0.75824 0.79040 1.19056 1.20464 1.17052 1.22029 0.95132 0.89246 1.58608 0.87751 1.16674 0.79130 0.92782 0.69608 1.92828 1.77747 1.97557 1.53813 1.92827 1.77778 1.97552 1.53781 1.22047 0.96674 0.93431 1.13808 1.24336 0.92321 0.86522 0.97039 1.84003 1.34921 1.14019 1.76278 1.20177 0.85118 0.92157 1.04775 1.20450 1.01778 0.86319 1.03506 1.21461 0.89750 1.01879 0.97279 1.21165 1.00510 0.92203 1.00387 1.20506 0.95800 0.95532 1.00081 1.20155 0.96106 0.92254 1.06312 0.91676 0.74248 0.81580 0.79904 0.82233 0.87882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.60 12.62 21.45 0.27 -54.32 15 2 C 0.03 1.43 5.39 84.65 0.46 1.89 15 3 Si 0.99 41.78 29.54 68.60 2.03 43.81 15 4 H -0.27 -10.76 7.11 99.48 0.71 -10.06 15 5 H -0.28 -11.60 7.11 99.48 0.71 -10.89 15 6 H -0.25 -9.52 7.11 99.48 0.71 -8.81 15 7 C -0.61 -34.09 8.38 25.60 0.21 -33.87 15 8 H 0.10 5.05 5.69 -2.91 -0.02 5.04 15 9 C 0.45 25.94 1.87 29.10 0.05 25.99 15 10 F -0.24 -14.68 16.59 44.97 0.75 -13.93 15 11 F -0.24 -14.67 16.59 44.97 0.75 -13.92 15 12 C -0.26 -12.39 5.69 -18.59 -0.11 -12.49 15 13 C 0.06 2.50 11.07 66.85 0.74 3.24 15 14 O -0.19 -6.91 10.58 -8.93 -0.09 -7.01 15 15 C 0.02 0.87 7.42 22.99 0.17 1.04 15 16 C -0.10 -2.59 10.07 22.35 0.23 -2.37 15 17 C -0.09 -1.83 10.01 22.30 0.22 -1.61 15 18 C -0.12 -3.32 9.98 22.04 0.22 -3.10 15 19 C -0.10 -3.84 10.05 22.20 0.22 -3.62 15 20 C -0.15 -6.31 6.38 -20.21 -0.13 -6.44 15 21 H 0.27 15.38 8.31 -92.71 -0.77 14.61 15 22 H 0.24 8.03 6.36 -2.91 -0.02 8.01 15 23 H 0.17 2.91 8.06 -2.91 -0.02 2.89 15 24 H 0.18 2.04 8.06 -2.91 -0.02 2.02 15 25 H 0.16 3.07 8.06 -2.91 -0.02 3.04 15 26 H 0.10 4.25 8.06 -2.91 -0.02 4.23 15 Total: -1.00 -73.85 246.14 7.21 -66.65 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 1.22 Total: 10.08 kcal Atomic # 6 Polarization: -33.63 SS G_CDS: 2.29 Total: -31.34 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: 0.27 Total: -54.32 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -0.09 Total: -7.01 kcal Atomic # 9 Polarization: -29.35 SS G_CDS: 1.49 Total: -27.85 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -73.85 7.21 -66.65 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259050254.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.480 kcal (2) G-P(sol) polarization free energy of solvation -73.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds