Wall clock time and date at job start Mon Mar 30 2020 06:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35935 * 116.99781 * 2 1 4 4 C 1.38814 * 119.96539 * 90.00443 * 3 2 1 5 5 C 1.50697 * 119.97956 * 359.96691 * 4 3 2 6 6 C 1.37981 * 120.03590 * 179.97438 * 4 3 2 7 7 C 1.39108 * 119.96397 * 359.97438 * 6 4 3 8 8 S 1.76208 * 120.03510 * 179.97438 * 7 6 4 9 9 C 1.76205 * 99.99716 * 94.53634 * 8 7 6 10 10 H 1.08001 * 119.99735 * 354.88261 * 9 8 7 11 11 C 1.38679 * 119.99663 * 174.88845 * 9 8 7 12 12 N 1.31654 * 120.00339 * 359.72028 * 11 9 8 13 13 Si 1.86799 * 119.99469 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47423 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.46917 * 119.99880 * 13 11 9 16 16 H 1.48501 * 109.47313 * 239.99738 * 13 11 9 17 17 C 1.39110 * 119.93063 * 0.26018 * 7 6 4 18 18 C 1.37982 * 119.96103 * 359.46519 * 17 7 6 19 19 C 1.50697 * 119.98000 * 180.29735 * 18 17 7 20 20 H 1.08992 * 109.47237 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47341 * 300.00642 * 1 2 3 22 22 H 1.09007 * 109.47007 * 59.99969 * 1 2 3 23 23 H 1.08996 * 109.47555 * 270.02496 * 5 4 3 24 24 H 1.08997 * 109.47124 * 30.03414 * 5 4 3 25 25 H 1.09000 * 109.46787 * 150.02663 * 5 4 3 26 26 H 1.08001 * 120.01552 * 180.02562 * 6 4 3 27 27 H 0.96995 * 120.00258 * 180.02562 * 12 11 9 28 28 H 1.07998 * 120.02066 * 179.74827 * 17 7 6 29 29 H 1.09002 * 109.47601 * 270.25329 * 19 18 17 30 30 H 1.09000 * 109.47431 * 30.26040 * 19 18 17 31 31 H 1.09009 * 109.47112 * 150.25330 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 2.3609 1.8290 1.2026 5 6 2.0177 1.1568 2.5069 6 6 2.9878 3.0582 1.2043 7 6 3.3047 3.6781 0.0000 8 16 4.1046 5.2482 0.0000 9 6 5.7849 4.7354 -0.1359 10 1 6.0328 3.6846 -0.1070 11 6 6.7890 5.6811 -0.2797 12 7 6.4862 6.9617 -0.3204 13 14 8.5703 5.1375 -0.4230 14 1 8.6428 3.6558 -0.3546 15 1 9.1267 5.6015 -1.7194 16 1 9.3578 5.7230 0.6915 17 6 2.9841 3.0600 -1.2043 18 6 2.3624 1.8282 -1.2026 19 6 2.0210 1.1551 -2.5070 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 1.0194 1.4613 2.8210 24 1 2.0433 0.0750 2.3760 25 1 2.7424 1.4479 3.2673 26 1 3.2329 3.5383 2.1401 27 1 7.1884 7.6232 -0.4214 28 1 3.2259 3.5419 -2.1401 29 1 1.0230 1.4594 -2.8226 30 1 2.7467 1.4456 -3.2666 31 1 2.0464 0.0733 -2.3752 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259101280.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:34 Heat of formation + Delta-G solvation = -48.747852 kcal Electronic energy + Delta-G solvation = -14418.287104 eV Core-core repulsion = 11982.890484 eV Total energy + Delta-G solvation = -2435.396620 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.11034 -38.13111 -34.65006 -34.58152 -32.10409 -28.90662 -27.78283 -27.62183 -26.94221 -23.02819 -21.91261 -19.78336 -18.62302 -17.42398 -17.11667 -16.92530 -16.55414 -15.09758 -14.97936 -14.87085 -14.51225 -14.08844 -14.02599 -13.94372 -13.44181 -13.24010 -12.99396 -12.85423 -12.77024 -12.60561 -12.35339 -12.24605 -11.56694 -11.22539 -10.87133 -10.65985 -9.57361 -9.36140 -8.79107 -8.38211 -6.18731 0.03787 0.35384 1.30874 1.36333 1.47358 1.70197 2.20287 2.42564 2.92647 2.93794 3.42609 3.81848 3.84780 4.31598 4.36563 4.40787 4.48425 4.53961 4.64832 4.68763 4.75156 4.76542 4.85609 4.87017 5.11477 5.30571 5.31556 5.39424 5.47042 5.56672 5.72149 6.16854 6.56441 7.01608 8.68376 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.034735 B = 0.006401 C = 0.006192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.911851 B = 4373.483947 C = 4520.993608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.341 6.341 3 C 0.093 3.907 4 C -0.113 4.113 5 C -0.102 4.102 6 C -0.089 4.089 7 C -0.117 4.117 8 S -0.092 6.092 9 C -0.534 4.534 10 H 0.064 0.936 11 C 0.021 3.979 12 N -0.906 5.906 13 Si 0.992 3.008 14 H -0.268 1.268 15 H -0.268 1.268 16 H -0.268 1.268 17 C -0.090 4.090 18 C -0.114 4.114 19 C -0.102 4.102 20 H 0.119 0.881 21 H 0.050 0.950 22 H 0.049 0.951 23 H 0.084 0.916 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.127 0.873 27 H 0.274 0.726 28 H 0.122 0.878 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.834 -13.334 0.513 17.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.259 6.259 3 C 0.050 3.950 4 C -0.115 4.115 5 C -0.159 4.159 6 C -0.110 4.110 7 C -0.228 4.228 8 S 0.142 5.858 9 C -0.681 4.681 10 H 0.082 0.918 11 C -0.184 4.184 12 N -0.543 5.543 13 Si 0.814 3.186 14 H -0.193 1.193 15 H -0.193 1.193 16 H -0.193 1.193 17 C -0.111 4.111 18 C -0.116 4.116 19 C -0.159 4.159 20 H 0.137 0.863 21 H 0.069 0.931 22 H 0.068 0.932 23 H 0.103 0.897 24 H 0.097 0.903 25 H 0.090 0.910 26 H 0.145 0.855 27 H 0.083 0.917 28 H 0.140 0.860 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.115 -12.209 0.565 16.521 hybrid contribution 1.471 -0.699 -0.200 1.641 sum -9.645 -12.908 0.364 16.117 Atomic orbital electron populations 1.23220 0.77259 1.04787 1.01230 1.85927 1.21526 1.24031 1.94390 1.18396 0.98670 0.86635 0.91333 1.20471 1.00100 0.94219 0.96730 1.20694 1.02541 1.00675 0.91951 1.21474 0.97838 0.94360 0.97296 1.22558 1.02765 1.01495 0.95975 1.83390 1.03281 1.03204 1.95897 1.23066 0.91482 0.95426 1.58160 0.91759 1.25970 1.04289 0.94469 0.93661 1.70122 1.35289 1.01211 1.47660 0.84999 0.76496 0.78503 0.78587 1.19270 1.19303 1.19294 1.21476 0.97701 0.94562 0.97325 1.20466 1.00199 0.94158 0.96765 1.20694 1.02489 1.00700 0.92009 0.86268 0.93125 0.93206 0.89736 0.90324 0.91007 0.85545 0.91675 0.86024 0.89756 0.91192 0.90263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.13 113.37 1.26 1.77 16 2 O -0.34 -9.03 8.49 -92.82 -0.79 -9.82 16 3 C 0.09 3.00 5.67 22.55 0.13 3.13 16 4 C -0.11 -3.75 5.89 -19.79 -0.12 -3.87 16 5 C -0.10 -2.51 9.79 71.23 0.70 -1.81 16 6 C -0.09 -3.57 9.44 22.42 0.21 -3.35 16 7 C -0.12 -5.35 5.46 22.69 0.12 -5.23 16 8 S -0.09 -5.07 21.41 -56.49 -1.21 -6.28 16 9 C -0.53 -31.52 9.46 67.93 0.64 -30.88 16 10 H 0.06 3.81 7.79 -2.91 -0.02 3.78 16 11 C 0.02 1.22 5.49 84.83 0.47 1.68 16 12 N -0.91 -54.36 13.22 21.63 0.29 -54.07 16 13 Si 0.99 44.55 29.55 68.60 2.03 46.58 16 14 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 15 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 16 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 17 C -0.09 -3.67 9.44 22.42 0.21 -3.46 16 18 C -0.11 -3.83 5.89 -19.79 -0.12 -3.94 16 19 C -0.10 -2.59 9.79 71.24 0.70 -1.89 16 20 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 21 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 22 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 23 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.08 1.78 7.53 -2.39 -0.02 1.77 16 25 H 0.07 1.70 8.08 -2.39 -0.02 1.68 16 26 H 0.13 4.98 8.06 -2.91 -0.02 4.95 16 27 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 28 H 0.12 4.99 8.06 -2.91 -0.02 4.97 16 29 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.07 1.73 8.09 -2.39 -0.02 1.71 16 31 H 0.08 1.84 7.53 -2.38 -0.02 1.82 16 Total: -1.00 -68.15 285.59 5.63 -62.52 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 1.11 Total: 8.92 kcal Atomic # 6 Polarization: -52.06 SS G_CDS: 4.21 Total: -47.85 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: 0.29 Total: -54.07 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -0.79 Total: -9.82 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: -5.07 SS G_CDS: -1.21 Total: -6.28 kcal Total: -68.15 5.63 -62.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259101280.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.769 kcal (2) G-P(sol) polarization free energy of solvation -68.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds