Wall clock time and date at job start Mon Mar 30 2020 06:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35933 * 116.99804 * 2 1 4 4 C 1.38520 * 120.09706 * 269.98513 * 3 2 1 5 5 C 1.50699 * 119.98257 * 0.02562 * 4 3 2 6 6 C 1.38271 * 120.03296 * 179.97438 * 4 3 2 7 7 C 1.38368 * 120.23021 * 0.02562 * 6 4 3 8 8 C 1.50703 * 119.90277 * 179.97438 * 7 6 4 9 9 C 1.38088 * 120.19477 * 359.72086 * 7 6 4 10 10 C 1.38993 * 119.96270 * 0.53431 * 9 7 6 11 11 S 1.76198 * 120.11499 * 179.74464 * 10 9 7 12 12 C 1.76199 * 100.00037 * 353.11366 * 11 10 9 13 13 H 1.07997 * 119.99564 * 354.33715 * 12 11 10 14 14 C 1.38686 * 119.99821 * 174.33542 * 12 11 10 15 15 N 1.31655 * 119.99900 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 120.00275 * 0.02562 * 14 12 11 17 17 H 1.48495 * 109.47374 * 89.99805 * 16 14 12 18 18 H 1.48504 * 109.47072 * 209.99979 * 16 14 12 19 19 H 1.48494 * 109.46946 * 329.99493 * 16 14 12 20 20 H 1.08993 * 109.47680 * 59.99609 * 1 2 3 21 21 H 1.08995 * 109.46593 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46993 * 299.99439 * 1 2 3 23 23 H 1.09003 * 109.46812 * 90.00150 * 5 4 3 24 24 H 1.09004 * 109.46877 * 210.00347 * 5 4 3 25 25 H 1.09000 * 109.47190 * 330.00637 * 5 4 3 26 26 H 1.07995 * 119.88509 * 180.02562 * 6 4 3 27 27 H 1.08994 * 109.47143 * 89.99354 * 8 7 6 28 28 H 1.08994 * 109.47542 * 209.99932 * 8 7 6 29 29 H 1.09005 * 109.46728 * 329.99877 * 8 7 6 30 30 H 1.08004 * 120.01490 * 180.30047 * 9 7 6 31 31 H 0.97000 * 120.00025 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 2.3617 1.8300 -1.1984 5 6 2.0203 1.1603 -2.5046 6 6 2.9890 3.0623 -1.1969 7 6 3.3043 3.6819 -0.0006 8 6 3.9885 5.0247 -0.0075 9 6 2.9893 3.0760 1.1996 10 6 2.3636 1.8349 1.2075 11 16 1.9660 1.0551 2.7366 12 6 2.7537 2.1620 3.8586 13 1 3.3593 2.9728 3.4814 14 6 2.5960 1.9920 5.2259 15 7 3.1850 2.8188 6.0643 16 14 1.5491 0.5892 5.8782 17 1 2.3994 -0.6116 6.0781 18 1 0.9409 0.9863 7.1735 19 1 0.4746 0.2780 4.9017 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3632 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.0225 1.4658 -2.8195 24 1 2.7462 1.4526 -3.2634 25 1 2.0452 0.0783 -2.3755 26 1 3.2336 3.5427 -2.1326 27 1 3.2378 5.8149 -0.0096 28 1 4.6128 5.1190 0.8808 29 1 4.6096 5.1114 -0.8991 30 1 3.2325 3.5645 2.1316 31 1 3.0750 2.6998 7.0206 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259105821.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:05 Heat of formation + Delta-G solvation = -26.386933 kcal Electronic energy + Delta-G solvation = -14626.213087 eV Core-core repulsion = 12191.786110 eV Total energy + Delta-G solvation = -2434.426978 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.41297 -36.92358 -32.80175 -32.54855 -31.19070 -27.34202 -26.98424 -25.87050 -24.84116 -21.99966 -20.28391 -18.13852 -16.85844 -15.78474 -15.40014 -15.14259 -14.95488 -13.91065 -13.57521 -13.39514 -13.19162 -12.87896 -12.73528 -12.18044 -11.93995 -11.78021 -11.59606 -11.41719 -11.14296 -10.95946 -10.76429 -10.65841 -9.90965 -9.38422 -9.31527 -8.85701 -8.71198 -7.85132 -6.78250 -6.48783 -4.22588 1.74618 1.90545 2.83440 3.16048 3.27841 3.41531 3.95290 4.10897 4.47717 4.56884 4.92151 5.20284 5.35316 5.58088 5.62186 5.69199 5.71174 5.77614 5.82578 5.92566 5.95499 6.11322 6.15039 6.20416 6.40564 6.64223 6.86725 7.01652 7.17385 7.37323 7.74900 8.07964 8.32322 8.93465 10.58560 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.025956 B = 0.009240 C = 0.006959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.480852 B = 3029.483661 C = 4022.567400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.326 6.326 3 C 0.069 3.931 4 C -0.087 4.087 5 C -0.105 4.105 6 C -0.148 4.148 7 C -0.072 4.072 8 C -0.109 4.109 9 C -0.130 4.130 10 C -0.073 4.073 11 S -0.024 6.024 12 C -0.541 4.541 13 H 0.108 0.892 14 C 0.100 3.900 15 N -0.866 5.866 16 Si 0.852 3.148 17 H -0.264 1.264 18 H -0.269 1.269 19 H -0.237 1.237 20 H 0.038 0.962 21 H 0.086 0.914 22 H 0.049 0.951 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.114 0.886 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.145 0.855 31 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.529 -0.875 -12.410 12.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.243 6.243 3 C 0.017 3.983 4 C -0.089 4.089 5 C -0.161 4.161 6 C -0.171 4.171 7 C -0.075 4.075 8 C -0.166 4.166 9 C -0.155 4.155 10 C -0.189 4.189 11 S 0.231 5.769 12 C -0.687 4.687 13 H 0.126 0.874 14 C -0.111 4.111 15 N -0.500 5.500 16 Si 0.676 3.324 17 H -0.189 1.189 18 H -0.194 1.194 19 H -0.161 1.161 20 H 0.056 0.944 21 H 0.105 0.895 22 H 0.067 0.933 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.132 0.868 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.163 0.837 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.078 -2.092 -11.678 12.545 hybrid contribution 0.193 0.849 0.343 0.936 sum -3.885 -1.242 -11.335 12.047 Atomic orbital electron populations 1.22890 0.80467 1.02341 1.00420 1.86003 1.18941 1.25154 1.94174 1.17935 1.02172 0.87568 0.90617 1.19838 1.00302 0.94721 0.94081 1.20620 1.00872 1.00910 0.93742 1.20516 1.04180 0.95373 0.97046 1.19791 0.98399 0.96358 0.92908 1.20738 0.99685 0.93895 1.02311 1.21358 1.00794 0.94696 0.98686 1.22531 1.01302 0.97133 0.97938 1.82992 1.64983 1.34349 0.94584 1.22802 1.35624 1.17627 0.92682 0.87426 1.24788 0.94686 0.95883 0.95727 1.69930 1.41118 1.35644 1.03337 0.86838 0.82265 0.82636 0.80627 1.18865 1.19403 1.16053 0.94374 0.89548 0.93270 0.92061 0.91996 0.91233 0.86762 0.91605 0.91530 0.92089 0.83732 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.13 101.05 1.12 1.64 16 2 O -0.33 -6.21 8.84 -19.53 -0.17 -6.38 16 3 C 0.07 1.38 5.70 -38.98 -0.22 1.16 16 4 C -0.09 -1.51 5.89 -104.51 -0.62 -2.12 16 5 C -0.10 -1.40 9.79 36.01 0.35 -1.04 16 6 C -0.15 -2.45 9.35 -39.52 -0.37 -2.82 16 7 C -0.07 -1.30 5.88 -104.63 -0.62 -1.91 16 8 C -0.11 -1.58 10.01 36.01 0.36 -1.22 16 9 C -0.13 -2.81 8.87 -39.36 -0.35 -3.16 16 10 C -0.07 -1.66 6.11 -38.81 -0.24 -1.90 16 11 S -0.02 -0.58 19.11 -107.50 -2.05 -2.64 16 12 C -0.54 -15.09 9.53 30.90 0.29 -14.79 16 13 H 0.11 3.13 5.21 -52.49 -0.27 2.86 16 14 C 0.10 2.79 5.50 -17.46 -0.10 2.69 16 15 N -0.87 -25.07 13.97 55.48 0.78 -24.30 16 16 Si 0.85 20.40 27.73 -169.99 -4.71 15.68 16 17 H -0.26 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.24 -5.50 6.74 56.52 0.38 -5.12 16 20 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 21 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 22 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 25 H 0.07 0.94 7.53 -51.93 -0.39 0.55 16 26 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 27 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 29 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 30 H 0.15 3.38 5.03 -52.48 -0.26 3.12 16 31 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 277.45 15.07 4.18 4.18 Total: -1.00 -29.78 277.45 -6.24 -36.02 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -3.88 Total: 0.91 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: -0.37 Total: -23.47 kcal Atomic # 7 Polarization: -25.07 SS G_CDS: 0.78 Total: -24.30 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.17 Total: -6.38 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.71 Total: 15.68 kcal Atomic # 16 Polarization: -0.58 SS G_CDS: -2.05 Total: -2.64 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.78 -6.24 -36.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259105821.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.628 kcal (2) G-P(sol) polarization free energy of solvation -29.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds