Wall clock time and date at job start Mon Mar 30 2020 06:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35933 * 116.99804 * 2 1 4 4 C 1.38520 * 120.09706 * 269.98513 * 3 2 1 5 5 C 1.50699 * 119.98257 * 0.02562 * 4 3 2 6 6 C 1.38271 * 120.03296 * 179.97438 * 4 3 2 7 7 C 1.38368 * 120.23021 * 0.02562 * 6 4 3 8 8 C 1.50703 * 119.90277 * 179.97438 * 7 6 4 9 9 C 1.38088 * 120.19477 * 359.72086 * 7 6 4 10 10 C 1.38993 * 119.96270 * 0.53431 * 9 7 6 11 11 S 1.76198 * 120.11499 * 179.74464 * 10 9 7 12 12 C 1.76199 * 100.00037 * 353.11366 * 11 10 9 13 13 H 1.07997 * 119.99564 * 354.33715 * 12 11 10 14 14 C 1.38686 * 119.99821 * 174.33542 * 12 11 10 15 15 N 1.31655 * 119.99900 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 120.00275 * 0.02562 * 14 12 11 17 17 H 1.48495 * 109.47374 * 89.99805 * 16 14 12 18 18 H 1.48504 * 109.47072 * 209.99979 * 16 14 12 19 19 H 1.48494 * 109.46946 * 329.99493 * 16 14 12 20 20 H 1.08993 * 109.47680 * 59.99609 * 1 2 3 21 21 H 1.08995 * 109.46593 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46993 * 299.99439 * 1 2 3 23 23 H 1.09003 * 109.46812 * 90.00150 * 5 4 3 24 24 H 1.09004 * 109.46877 * 210.00347 * 5 4 3 25 25 H 1.09000 * 109.47190 * 330.00637 * 5 4 3 26 26 H 1.07995 * 119.88509 * 180.02562 * 6 4 3 27 27 H 1.08994 * 109.47143 * 89.99354 * 8 7 6 28 28 H 1.08994 * 109.47542 * 209.99932 * 8 7 6 29 29 H 1.09005 * 109.46728 * 329.99877 * 8 7 6 30 30 H 1.08004 * 120.01490 * 180.30047 * 9 7 6 31 31 H 0.97000 * 120.00025 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 2.3617 1.8300 -1.1984 5 6 2.0203 1.1603 -2.5046 6 6 2.9890 3.0623 -1.1969 7 6 3.3043 3.6819 -0.0006 8 6 3.9885 5.0247 -0.0075 9 6 2.9893 3.0760 1.1996 10 6 2.3636 1.8349 1.2075 11 16 1.9660 1.0551 2.7366 12 6 2.7537 2.1620 3.8586 13 1 3.3593 2.9728 3.4814 14 6 2.5960 1.9920 5.2259 15 7 3.1850 2.8188 6.0643 16 14 1.5491 0.5892 5.8782 17 1 2.3994 -0.6116 6.0781 18 1 0.9409 0.9863 7.1735 19 1 0.4746 0.2780 4.9017 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3632 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.0225 1.4658 -2.8195 24 1 2.7462 1.4526 -3.2634 25 1 2.0452 0.0783 -2.3755 26 1 3.2336 3.5427 -2.1326 27 1 3.2378 5.8149 -0.0096 28 1 4.6128 5.1190 0.8808 29 1 4.6096 5.1114 -0.8991 30 1 3.2325 3.5645 2.1316 31 1 3.0750 2.6998 7.0206 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259105821.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:04 Heat of formation + Delta-G solvation = -44.188529 kcal Electronic energy + Delta-G solvation = -14626.985022 eV Core-core repulsion = 12191.786110 eV Total energy + Delta-G solvation = -2435.198913 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.86946 -38.35346 -34.84118 -33.94010 -32.64933 -28.76588 -28.30322 -27.68240 -26.26216 -23.50030 -21.73785 -20.00390 -18.41641 -17.39592 -17.15557 -16.77356 -16.48988 -15.50532 -14.89632 -14.82242 -14.62621 -14.30667 -13.91835 -13.75117 -13.30673 -13.24374 -13.07481 -12.95924 -12.83162 -12.47059 -12.34509 -12.08659 -11.66372 -11.31888 -10.81780 -10.76527 -10.40921 -9.30450 -8.65531 -8.59634 -6.34267 0.26708 0.39487 1.00001 1.25091 1.37178 1.59642 2.13732 2.48386 2.56389 2.78648 3.06191 3.93117 3.99629 4.37416 4.40227 4.45671 4.52131 4.59206 4.68150 4.74812 4.81413 4.84866 4.90172 5.04127 5.11152 5.35279 5.38483 5.57106 5.64259 5.70465 5.94772 6.13167 6.64880 6.80283 8.50801 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.025956 B = 0.009240 C = 0.006959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.480852 B = 3029.483661 C = 4022.567400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.341 6.341 3 C 0.064 3.936 4 C -0.087 4.087 5 C -0.101 4.101 6 C -0.130 4.130 7 C -0.076 4.076 8 C -0.107 4.107 9 C -0.155 4.155 10 C -0.104 4.104 11 S -0.046 6.046 12 C -0.554 4.554 13 H 0.078 0.922 14 C 0.048 3.952 15 N -0.909 5.909 16 Si 0.911 3.089 17 H -0.260 1.260 18 H -0.254 1.254 19 H -0.228 1.228 20 H 0.061 0.939 21 H 0.115 0.885 22 H 0.030 0.970 23 H 0.082 0.918 24 H 0.089 0.911 25 H 0.066 0.934 26 H 0.161 0.839 27 H 0.080 0.920 28 H 0.052 0.948 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.356 -1.365 -15.685 16.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.258 6.258 3 C 0.013 3.987 4 C -0.089 4.089 5 C -0.157 4.157 6 C -0.151 4.151 7 C -0.078 4.078 8 C -0.164 4.164 9 C -0.180 4.180 10 C -0.219 4.219 11 S 0.205 5.795 12 C -0.701 4.701 13 H 0.096 0.904 14 C -0.158 4.158 15 N -0.545 5.545 16 Si 0.732 3.268 17 H -0.184 1.184 18 H -0.178 1.178 19 H -0.152 1.152 20 H 0.080 0.920 21 H 0.133 0.867 22 H 0.048 0.952 23 H 0.101 0.899 24 H 0.108 0.892 25 H 0.085 0.915 26 H 0.178 0.822 27 H 0.099 0.901 28 H 0.071 0.929 29 H 0.113 0.887 30 H 0.129 0.871 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.899 -2.558 -15.012 15.997 hybrid contribution 0.496 1.082 1.085 1.611 sum -4.403 -1.476 -13.927 14.681 Atomic orbital electron populations 1.23123 0.78359 1.04359 1.00628 1.85955 1.20933 1.24734 1.94210 1.18196 1.02089 0.87785 0.90633 1.20371 0.98867 0.94854 0.94784 1.20706 1.02853 1.00352 0.91831 1.21062 1.01392 0.94687 0.98003 1.20188 0.97786 0.97688 0.92093 1.20802 1.00083 0.92190 1.03333 1.21263 1.02547 0.95077 0.99118 1.22658 1.03654 0.98161 0.97435 1.82585 1.66281 1.34812 0.95825 1.22936 1.35742 1.17545 0.93904 0.90417 1.25672 0.95893 0.98404 0.95846 1.70020 1.42917 1.37699 1.03876 0.85953 0.80898 0.79428 0.80559 1.18416 1.17793 1.15165 0.92013 0.86724 0.95156 0.89927 0.89229 0.91539 0.82174 0.90117 0.92862 0.88739 0.87058 0.91031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 11.13 113.37 1.26 2.11 16 2 O -0.34 -12.50 8.84 -92.80 -0.82 -13.32 16 3 C 0.06 2.50 5.70 22.66 0.13 2.63 16 4 C -0.09 -2.70 5.89 -19.79 -0.12 -2.81 16 5 C -0.10 -2.18 9.79 71.24 0.70 -1.49 16 6 C -0.13 -3.77 9.35 22.31 0.21 -3.56 16 7 C -0.08 -2.61 5.88 -19.87 -0.12 -2.72 16 8 C -0.11 -2.87 10.01 71.24 0.71 -2.16 16 9 C -0.16 -6.96 8.87 22.42 0.20 -6.76 16 10 C -0.10 -4.84 6.11 22.77 0.14 -4.70 16 11 S -0.05 -2.36 19.11 -56.49 -1.08 -3.44 16 12 C -0.55 -32.81 9.53 67.93 0.65 -32.16 16 13 H 0.08 4.93 5.21 -2.91 -0.02 4.92 16 14 C 0.05 2.81 5.50 84.83 0.47 3.28 16 15 N -0.91 -55.02 13.97 21.63 0.30 -54.72 16 16 Si 0.91 43.13 27.73 68.60 1.90 45.03 16 17 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 18 H -0.25 -11.24 7.11 99.48 0.71 -10.53 16 19 H -0.23 -10.39 6.74 99.48 0.67 -9.72 16 20 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 21 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 22 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.09 1.49 8.09 -2.38 -0.02 1.47 16 25 H 0.07 1.52 7.53 -2.39 -0.02 1.51 16 26 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 27 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.05 1.56 8.08 -2.39 -0.02 1.54 16 29 H 0.09 1.90 8.08 -2.38 -0.02 1.88 16 30 H 0.11 5.69 5.03 -2.91 -0.01 5.68 16 31 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -68.65 277.45 5.62 -63.03 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 1.09 Total: 11.78 kcal Atomic # 6 Polarization: -52.59 SS G_CDS: 4.23 Total: -48.36 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: 0.30 Total: -54.72 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -0.82 Total: -13.32 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.90 Total: 45.03 kcal Atomic # 16 Polarization: -2.36 SS G_CDS: -1.08 Total: -3.44 kcal Total: -68.65 5.62 -63.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259105821.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.842 kcal (2) G-P(sol) polarization free energy of solvation -68.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds