Wall clock time and date at job start Mon Mar 30 2020 06:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.36000 * 117.00395 * 2 1 4 4 C 1.38738 * 119.97419 * 359.97438 * 3 2 1 5 5 C 1.38071 * 120.02374 * 180.30360 * 4 3 2 6 6 C 1.38938 * 119.97553 * 359.46422 * 5 4 3 7 7 S 1.76197 * 120.02424 * 180.25622 * 6 5 4 8 8 C 1.81398 * 102.99904 * 0.27651 * 7 6 5 9 9 C 1.50702 * 109.46749 * 179.97438 * 8 7 6 10 10 H 1.07997 * 120.00421 * 0.02562 * 9 8 7 11 11 C 1.37886 * 119.99854 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99840 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99918 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47012 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46843 * 120.00503 * 13 11 9 16 16 H 1.48498 * 109.46906 * 239.99963 * 13 11 9 17 17 C 1.38900 * 119.94928 * 0.53442 * 6 5 4 18 18 C 1.38113 * 119.97746 * 359.72380 * 17 6 5 19 19 C 1.50700 * 119.98947 * 180.02562 * 18 17 6 20 20 H 1.09004 * 109.47706 * 180.02562 * 1 2 3 21 21 H 1.09009 * 109.46911 * 300.00209 * 1 2 3 22 22 H 1.08999 * 109.47425 * 60.00089 * 1 2 3 23 23 H 1.08002 * 119.98396 * 0.02562 * 4 3 2 24 24 H 1.07995 * 120.00652 * 179.72342 * 5 4 3 25 25 H 1.08997 * 109.47222 * 299.99713 * 8 7 6 26 26 H 1.09001 * 109.47217 * 60.00458 * 8 7 6 27 27 H 0.96999 * 119.99654 * 179.97438 * 12 11 9 28 28 H 1.08000 * 120.01429 * 179.74322 * 17 6 5 29 29 H 1.09001 * 109.46932 * 270.01700 * 19 18 17 30 30 H 1.09000 * 109.47256 * 30.01526 * 19 18 17 31 31 H 1.08996 * 109.47433 * 150.02281 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2904 2.3750 -0.0005 5 6 1.9162 3.6057 -0.0069 6 6 3.3037 3.6790 -0.0015 7 16 4.1036 5.2489 -0.0027 8 6 2.7140 6.4149 -0.0032 9 6 3.2426 7.8262 -0.0036 10 1 4.3079 8.0039 -0.0040 11 6 2.3661 8.8906 -0.0045 12 7 1.0689 8.6742 -0.0045 13 14 3.0213 10.6400 -0.0058 14 1 4.5061 10.6124 -0.0062 15 1 2.5394 11.3481 -1.2188 16 1 2.5392 11.3499 1.2061 17 6 4.0596 2.5137 -0.0009 18 6 3.4315 1.2837 0.0000 19 6 4.2514 0.0192 0.0012 20 1 -0.3635 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8901 22 1 -0.3634 0.5138 -0.8900 23 1 0.2119 2.3178 -0.0005 24 1 1.3274 4.5110 -0.0118 25 1 2.1052 6.2543 -0.8929 26 1 2.1057 6.2555 0.8871 27 1 0.4524 9.4231 -0.0048 28 1 5.1382 2.5694 -0.0009 29 1 4.4495 -0.2863 -1.0262 30 1 5.1956 0.1989 0.5153 31 1 3.7022 -0.7695 0.5153 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259160268.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:39 Heat of formation + Delta-G solvation = -30.748809 kcal Electronic energy + Delta-G solvation = -14040.522496 eV Core-core repulsion = 11605.906373 eV Total energy + Delta-G solvation = -2434.616123 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.93041 -37.14512 -33.29038 -32.64970 -29.90854 -28.74975 -27.54357 -26.43686 -23.25930 -21.88182 -21.36542 -17.80981 -16.93493 -16.10983 -15.97109 -15.67869 -14.77691 -14.22510 -13.97638 -13.49343 -13.36917 -12.92631 -12.62879 -12.35690 -12.30146 -11.95778 -11.92097 -11.55581 -11.13933 -10.90788 -10.73522 -10.63113 -10.05971 -9.64728 -9.05833 -8.81201 -8.63931 -8.35003 -6.45490 -6.26706 -4.31804 1.59332 1.64442 2.54308 3.21527 3.28957 3.34792 3.40755 3.70167 3.95890 4.30073 4.96537 4.99436 5.11076 5.14500 5.14933 5.41694 5.47557 5.57186 5.72918 5.78075 5.82643 6.05703 6.29555 6.49798 6.60829 6.74473 6.95958 6.96901 6.99790 7.54998 7.67324 7.90781 8.69907 9.32171 10.84752 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.044275 B = 0.005214 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.263282 B = 5369.096804 C = 5975.611058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.100 3.900 4 C -0.183 4.183 5 C -0.100 4.100 6 C -0.096 4.096 7 S -0.164 6.164 8 C 0.071 3.929 9 C -0.517 4.517 10 H 0.069 0.931 11 C 0.067 3.933 12 N -0.891 5.891 13 Si 0.908 3.092 14 H -0.269 1.269 15 H -0.281 1.281 16 H -0.281 1.281 17 C -0.077 4.077 18 C -0.104 4.104 19 C -0.100 4.100 20 H 0.095 0.905 21 H 0.053 0.947 22 H 0.053 0.947 23 H 0.126 0.874 24 H 0.134 0.866 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.266 0.734 28 H 0.130 0.870 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.026 -14.876 0.004 14.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.053 3.947 4 C -0.203 4.203 5 C -0.124 4.124 6 C -0.209 4.209 7 S 0.082 5.918 8 C -0.076 4.076 9 C -0.556 4.556 10 H 0.087 0.913 11 C -0.137 4.137 12 N -0.529 5.529 13 Si 0.735 3.265 14 H -0.193 1.193 15 H -0.207 1.207 16 H -0.206 1.206 17 C -0.101 4.101 18 C -0.106 4.106 19 C -0.157 4.157 20 H 0.113 0.887 21 H 0.071 0.929 22 H 0.072 0.928 23 H 0.143 0.857 24 H 0.152 0.848 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.148 0.852 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.085 -14.570 0.004 14.610 hybrid contribution -1.583 0.875 -0.009 1.809 sum -0.498 -13.695 -0.004 13.704 Atomic orbital electron populations 1.22984 0.79039 1.03327 1.01352 1.86017 1.20773 1.27088 1.89423 1.18690 0.91697 0.83887 1.00450 1.21094 0.99601 0.92013 1.07593 1.21209 0.93569 0.97988 0.99667 1.21964 0.96137 0.98534 1.04249 1.85332 1.20355 0.95261 1.90820 1.21350 0.91464 0.94118 1.00672 1.20679 0.93798 0.88308 1.52828 0.91264 1.24961 0.94676 0.99667 0.94410 1.69955 1.01522 1.32069 1.49314 0.86269 0.79354 0.83102 0.77806 1.19328 1.20656 1.20650 1.20493 0.99318 0.89491 1.00805 1.19073 0.90494 0.95564 1.05495 1.20560 0.98671 0.94452 1.01987 0.88681 0.92857 0.92839 0.85661 0.84806 0.93922 0.93920 0.92427 0.85247 0.91656 0.91815 0.91432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.32 -4.34 9.53 -19.74 -0.19 -4.53 16 3 C 0.10 1.56 6.66 -39.23 -0.26 1.30 16 4 C -0.18 -2.96 9.03 -39.46 -0.36 -3.32 16 5 C -0.10 -1.89 9.36 -39.38 -0.37 -2.26 16 6 C -0.10 -1.87 6.11 -39.08 -0.24 -2.11 16 7 S -0.16 -3.63 21.84 -107.50 -2.35 -5.97 16 8 C 0.07 1.82 4.09 36.01 0.15 1.97 16 9 C -0.52 -14.34 9.13 -34.44 -0.31 -14.65 16 10 H 0.07 1.91 7.71 -52.49 -0.40 1.51 16 11 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 12 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 13 Si 0.91 21.04 29.54 -169.99 -5.02 16.02 16 14 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 C -0.08 -1.30 9.44 -39.38 -0.37 -1.67 16 18 C -0.10 -1.61 5.89 -104.50 -0.62 -2.22 16 19 C -0.10 -1.21 9.79 36.01 0.35 -0.85 16 20 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 21 H 0.05 0.49 7.66 -51.92 -0.40 0.10 16 22 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 23 H 0.13 1.71 6.29 -52.49 -0.33 1.38 16 24 H 0.13 2.70 5.87 -52.49 -0.31 2.39 16 25 H 0.04 1.14 7.73 -51.93 -0.40 0.74 16 26 H 0.04 1.14 7.76 -51.92 -0.40 0.74 16 27 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 31 H 0.07 0.79 7.52 -51.93 -0.39 0.39 16 LS Contribution 279.21 15.07 4.21 4.21 Total: -1.00 -29.47 279.21 -7.60 -37.08 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -3.86 Total: -1.27 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -1.13 Total: -20.79 kcal Atomic # 7 Polarization: -25.48 SS G_CDS: 0.74 Total: -24.74 kcal Atomic # 8 Polarization: -4.34 SS G_CDS: -0.19 Total: -4.53 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -2.35 Total: -5.97 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.47 -7.60 -37.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259160268.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.327 kcal (2) G-P(sol) polarization free energy of solvation -29.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds