Wall clock time and date at job start Mon Mar 30 2020 06:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.36000 * 117.00395 * 2 1 4 4 C 1.38738 * 119.97419 * 359.97438 * 3 2 1 5 5 C 1.38071 * 120.02374 * 180.30360 * 4 3 2 6 6 C 1.38938 * 119.97553 * 359.46422 * 5 4 3 7 7 S 1.76197 * 120.02424 * 180.25622 * 6 5 4 8 8 C 1.81398 * 102.99904 * 0.27651 * 7 6 5 9 9 C 1.50702 * 109.46749 * 179.97438 * 8 7 6 10 10 H 1.07997 * 120.00421 * 0.02562 * 9 8 7 11 11 C 1.37886 * 119.99854 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99840 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99918 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47012 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46843 * 120.00503 * 13 11 9 16 16 H 1.48498 * 109.46906 * 239.99963 * 13 11 9 17 17 C 1.38900 * 119.94928 * 0.53442 * 6 5 4 18 18 C 1.38113 * 119.97746 * 359.72380 * 17 6 5 19 19 C 1.50700 * 119.98947 * 180.02562 * 18 17 6 20 20 H 1.09004 * 109.47706 * 180.02562 * 1 2 3 21 21 H 1.09009 * 109.46911 * 300.00209 * 1 2 3 22 22 H 1.08999 * 109.47425 * 60.00089 * 1 2 3 23 23 H 1.08002 * 119.98396 * 0.02562 * 4 3 2 24 24 H 1.07995 * 120.00652 * 179.72342 * 5 4 3 25 25 H 1.08997 * 109.47222 * 299.99713 * 8 7 6 26 26 H 1.09001 * 109.47217 * 60.00458 * 8 7 6 27 27 H 0.96999 * 119.99654 * 179.97438 * 12 11 9 28 28 H 1.08000 * 120.01429 * 179.74322 * 17 6 5 29 29 H 1.09001 * 109.46932 * 270.01700 * 19 18 17 30 30 H 1.09000 * 109.47256 * 30.01526 * 19 18 17 31 31 H 1.08996 * 109.47433 * 150.02281 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2904 2.3750 -0.0005 5 6 1.9162 3.6057 -0.0069 6 6 3.3037 3.6790 -0.0015 7 16 4.1036 5.2489 -0.0027 8 6 2.7140 6.4149 -0.0032 9 6 3.2426 7.8262 -0.0036 10 1 4.3079 8.0039 -0.0040 11 6 2.3661 8.8906 -0.0045 12 7 1.0689 8.6742 -0.0045 13 14 3.0213 10.6400 -0.0058 14 1 4.5061 10.6124 -0.0062 15 1 2.5394 11.3481 -1.2188 16 1 2.5392 11.3499 1.2061 17 6 4.0596 2.5137 -0.0009 18 6 3.4315 1.2837 0.0000 19 6 4.2514 0.0192 0.0012 20 1 -0.3635 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8901 22 1 -0.3634 0.5138 -0.8900 23 1 0.2119 2.3178 -0.0005 24 1 1.3274 4.5110 -0.0118 25 1 2.1052 6.2543 -0.8929 26 1 2.1057 6.2555 0.8871 27 1 0.4524 9.4231 -0.0048 28 1 5.1382 2.5694 -0.0009 29 1 4.4495 -0.2863 -1.0262 30 1 5.1956 0.1989 0.5153 31 1 3.7022 -0.7695 0.5153 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259160268.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:39 Heat of formation + Delta-G solvation = -46.996957 kcal Electronic energy + Delta-G solvation = -14041.227069 eV Core-core repulsion = 11605.906373 eV Total energy + Delta-G solvation = -2435.320695 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.13430 -38.34529 -35.37846 -33.90470 -31.20755 -30.81794 -28.44743 -27.66581 -25.25170 -23.21774 -22.65122 -19.12757 -18.70936 -17.77899 -17.29715 -16.68744 -16.61480 -15.56236 -15.44172 -14.77890 -14.71167 -14.47535 -14.33543 -14.03117 -13.71195 -13.14703 -13.02145 -12.78038 -12.73783 -12.51659 -12.19905 -12.02182 -11.76089 -11.60023 -10.94141 -10.80065 -10.09729 -9.69256 -8.37542 -8.10639 -6.51912 0.25611 0.28373 0.87329 1.39754 1.40093 1.54936 1.85162 2.34545 2.37284 2.61797 2.97715 3.74814 3.80428 4.21029 4.24977 4.39896 4.41924 4.56024 4.62137 4.74429 4.84007 4.84121 4.87604 4.88923 5.13293 5.24312 5.32009 5.42269 5.52768 5.70110 5.80974 6.39695 6.55625 7.17085 8.75074 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.044275 B = 0.005214 C = 0.004685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.263282 B = 5369.096804 C = 5975.611058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.320 6.320 3 C 0.109 3.891 4 C -0.183 4.183 5 C -0.118 4.118 6 C -0.121 4.121 7 S -0.167 6.167 8 C 0.080 3.920 9 C -0.542 4.542 10 H 0.067 0.933 11 C 0.017 3.983 12 N -0.924 5.924 13 Si 0.980 3.020 14 H -0.263 1.263 15 H -0.272 1.272 16 H -0.272 1.272 17 C -0.074 4.074 18 C -0.104 4.104 19 C -0.097 4.097 20 H 0.127 0.873 21 H 0.058 0.942 22 H 0.058 0.942 23 H 0.148 0.852 24 H 0.109 0.891 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.272 0.728 28 H 0.146 0.854 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.407 -16.438 -0.003 16.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.234 6.234 3 C 0.061 3.939 4 C -0.204 4.204 5 C -0.142 4.142 6 C -0.234 4.234 7 S 0.077 5.923 8 C -0.068 4.068 9 C -0.580 4.580 10 H 0.085 0.915 11 C -0.184 4.184 12 N -0.562 5.562 13 Si 0.802 3.198 14 H -0.187 1.187 15 H -0.197 1.197 16 H -0.197 1.197 17 C -0.098 4.098 18 C -0.107 4.107 19 C -0.153 4.153 20 H 0.145 0.855 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.166 0.834 24 H 0.127 0.873 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.081 0.919 28 H 0.164 0.836 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.503 -16.172 -0.003 16.242 hybrid contribution -1.815 1.113 -0.007 2.129 sum -0.312 -15.059 -0.010 15.062 Atomic orbital electron populations 1.23341 0.76844 1.05687 1.01896 1.86036 1.22969 1.25603 1.88781 1.18847 0.92070 0.84411 0.98547 1.21269 1.00925 0.91177 1.06997 1.21101 0.93459 0.98355 1.01331 1.21938 0.96536 0.97576 1.07370 1.84989 1.18741 0.96500 1.92021 1.20968 0.92396 0.95029 0.98356 1.21011 0.93889 0.89659 1.53488 0.91528 1.25931 0.94830 1.04180 0.93489 1.70063 1.02808 1.33647 1.49694 0.85179 0.78913 0.77417 0.78251 1.18688 1.19732 1.19720 1.20691 1.00078 0.89043 0.99980 1.19492 0.91022 0.96317 1.03843 1.20635 0.98878 0.92609 1.03220 0.85534 0.92302 0.92289 0.83412 0.87276 0.96253 0.96263 0.91944 0.83620 0.90263 0.90182 0.90669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.39 16 2 O -0.32 -7.71 9.53 -93.55 -0.89 -8.61 16 3 C 0.11 3.18 6.66 22.50 0.15 3.33 16 4 C -0.18 -5.82 9.03 22.35 0.20 -5.61 16 5 C -0.12 -4.63 9.36 22.40 0.21 -4.42 16 6 C -0.12 -4.83 6.11 22.60 0.14 -4.69 16 7 S -0.17 -7.64 21.84 -56.49 -1.23 -8.88 16 8 C 0.08 4.34 4.09 71.24 0.29 4.63 16 9 C -0.54 -31.06 9.13 25.60 0.23 -30.82 16 10 H 0.07 3.76 7.71 -2.91 -0.02 3.74 16 11 C 0.02 0.95 5.46 84.66 0.46 1.41 16 12 N -0.92 -54.23 13.29 21.45 0.28 -53.94 16 13 Si 0.98 43.41 29.54 68.60 2.03 45.44 16 14 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 15 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 16 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 17 C -0.07 -2.43 9.44 22.40 0.21 -2.22 16 18 C -0.10 -2.99 5.89 -19.79 -0.12 -3.11 16 19 C -0.10 -2.00 9.79 71.24 0.70 -1.30 16 20 H 0.13 1.31 8.14 -2.38 -0.02 1.29 16 21 H 0.06 0.93 7.66 -2.38 -0.02 0.91 16 22 H 0.06 0.93 7.66 -2.39 -0.02 0.91 16 23 H 0.15 3.87 6.29 -2.91 -0.02 3.85 16 24 H 0.11 4.75 5.87 -2.91 -0.02 4.73 16 25 H 0.02 1.10 7.73 -2.39 -0.02 1.09 16 26 H 0.02 1.10 7.76 -2.39 -0.02 1.08 16 27 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 28 H 0.15 4.20 8.06 -2.91 -0.02 4.17 16 29 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.08 1.41 8.09 -2.39 -0.02 1.39 16 31 H 0.07 1.47 7.52 -2.39 -0.02 1.45 16 Total: -1.00 -64.65 279.21 4.90 -59.75 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: 1.12 Total: 7.66 kcal Atomic # 6 Polarization: -45.01 SS G_CDS: 3.59 Total: -41.42 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: 0.28 Total: -53.94 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: -0.89 Total: -8.61 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: -7.64 SS G_CDS: -1.23 Total: -8.88 kcal Total: -64.65 4.90 -59.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259160268.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.757 kcal (2) G-P(sol) polarization free energy of solvation -64.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds