Wall clock time and date at job start Mon Mar 30 2020 06:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36009 * 116.99472 * 2 1 4 4 C 1.38483 * 120.08720 * 0.02562 * 3 2 1 5 5 C 1.38299 * 120.02407 * 180.25084 * 4 3 2 6 6 C 1.38277 * 120.18994 * 359.44606 * 5 4 3 7 7 C 1.50701 * 119.91752 * 180.27676 * 6 5 4 8 8 C 1.38203 * 120.16226 * 0.55482 * 6 5 4 9 9 C 1.38789 * 119.97472 * 359.72215 * 8 6 5 10 10 S 1.76202 * 120.09387 * 179.97438 * 9 8 6 11 11 C 1.81408 * 102.99893 * 0.02562 * 10 9 8 12 12 C 1.50697 * 109.46890 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00255 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99627 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00215 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99785 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46920 * 90.00056 * 16 14 12 18 18 H 1.48493 * 109.47330 * 209.99838 * 16 14 12 19 19 H 1.48502 * 109.47166 * 330.00270 * 16 14 12 20 20 H 1.09000 * 109.47267 * 299.99951 * 1 2 3 21 21 H 1.09004 * 109.47046 * 60.00054 * 1 2 3 22 22 H 1.09004 * 109.46791 * 179.97438 * 1 2 3 23 23 H 1.08002 * 119.98430 * 359.96998 * 4 3 2 24 24 H 1.07996 * 119.90250 * 179.71748 * 5 4 3 25 25 H 1.09005 * 109.46714 * 270.27326 * 7 6 5 26 26 H 1.08999 * 109.46747 * 30.27432 * 7 6 5 27 27 H 1.08998 * 109.46914 * 150.27807 * 7 6 5 28 28 H 1.08003 * 120.00721 * 179.74874 * 8 6 5 29 29 H 1.09000 * 109.46859 * 299.99844 * 11 10 9 30 30 H 1.09002 * 109.47056 * 59.99998 * 11 10 9 31 31 H 0.97001 * 119.99859 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2938 2.3744 0.0005 5 6 1.9229 3.6060 -0.0047 6 6 3.3036 3.6816 0.0011 7 6 3.9827 5.0269 0.0016 8 6 4.0623 2.5265 0.0005 9 6 3.4381 1.2869 0.0000 10 16 4.4023 -0.1879 -0.0013 11 6 6.1050 0.4379 -0.0009 12 6 7.0666 -0.7225 -0.0014 13 1 6.6910 -1.7351 -0.0023 14 6 8.4259 -0.4913 -0.0017 15 7 8.8832 0.7417 -0.0021 16 14 9.6178 -1.9296 -0.0030 17 1 9.9332 -2.3099 -1.4034 18 1 10.8675 -1.5376 0.6968 19 1 9.0003 -3.0849 0.6965 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 0.2152 2.3191 0.0005 24 1 1.3341 4.5113 -0.0089 25 1 4.1464 5.3517 -1.0260 26 1 3.3519 5.7521 0.5157 27 1 4.9409 4.9500 0.5153 28 1 5.1405 2.5884 0.0009 29 1 6.2687 1.0462 -0.8904 30 1 6.2689 1.0447 0.8896 31 1 9.8395 0.9042 -0.0019 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259172145.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:58 Heat of formation + Delta-G solvation = -27.893182 kcal Electronic energy + Delta-G solvation = -14192.560645 eV Core-core repulsion = 11758.068351 eV Total energy + Delta-G solvation = -2434.492293 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.74879 -37.33813 -33.20555 -31.78462 -30.88272 -28.67052 -27.57971 -25.67286 -23.25035 -22.53619 -20.87141 -18.02829 -16.60233 -16.03765 -15.79773 -15.52946 -14.77047 -14.15224 -13.89515 -13.61782 -13.50051 -12.94489 -12.56741 -12.34374 -12.00943 -11.98121 -11.78014 -11.40080 -10.97925 -10.91488 -10.65287 -10.64945 -9.92870 -9.61798 -9.23263 -8.93527 -8.60027 -7.97317 -6.41269 -6.22309 -4.27128 1.58573 1.70786 2.56398 3.25660 3.31288 3.36731 3.53236 3.79092 3.97986 4.33726 4.99021 5.11609 5.15211 5.18276 5.22146 5.37768 5.50676 5.55771 5.67606 5.82444 5.95670 6.13439 6.24126 6.48159 6.53331 6.88557 7.02251 7.04776 7.08622 7.63824 7.71644 7.96002 8.74239 9.36361 10.89152 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.028631 B = 0.006600 C = 0.005390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.723365 B = 4241.440280 C = 5193.413482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.304 6.304 3 C 0.124 3.876 4 C -0.192 4.192 5 C -0.106 4.106 6 C -0.104 4.104 7 C -0.108 4.108 8 C -0.100 4.100 9 C -0.095 4.095 10 S -0.135 6.135 11 C 0.063 3.937 12 C -0.516 4.516 13 H 0.068 0.932 14 C 0.067 3.933 15 N -0.891 5.891 16 Si 0.908 3.092 17 H -0.277 1.277 18 H -0.284 1.284 19 H -0.270 1.270 20 H 0.051 0.949 21 H 0.051 0.949 22 H 0.096 0.904 23 H 0.125 0.875 24 H 0.119 0.881 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.138 0.862 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.819 5.324 -0.008 14.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.218 6.218 3 C 0.073 3.927 4 C -0.212 4.212 5 C -0.128 4.128 6 C -0.106 4.106 7 C -0.165 4.165 8 C -0.125 4.125 9 C -0.209 4.209 10 S 0.113 5.887 11 C -0.084 4.084 12 C -0.555 4.555 13 H 0.086 0.914 14 C -0.137 4.137 15 N -0.528 5.528 16 Si 0.734 3.266 17 H -0.203 1.203 18 H -0.209 1.209 19 H -0.195 1.195 20 H 0.069 0.931 21 H 0.069 0.931 22 H 0.115 0.885 23 H 0.142 0.858 24 H 0.137 0.863 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.155 0.845 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.809 3.966 -0.004 14.367 hybrid contribution 0.779 0.862 -0.018 1.161 sum -13.030 4.827 -0.022 13.895 Atomic orbital electron populations 1.22988 0.79323 1.03526 1.00795 1.86199 1.20356 1.26479 1.88734 1.18379 0.90493 0.84395 0.99462 1.20987 0.99241 0.92103 1.08903 1.20650 0.93779 0.96585 1.01777 1.19717 0.93477 0.95128 1.02299 1.20714 1.00460 0.93275 1.02042 1.21141 1.00557 0.90168 1.00642 1.21410 0.93668 0.99141 1.06679 1.85563 1.05156 1.07988 1.90024 1.21394 0.86310 1.00066 1.00636 1.20625 0.89957 0.92111 1.52816 0.91359 1.24952 0.97927 0.96356 0.94463 1.69946 1.14338 1.19253 1.49310 0.86330 0.79892 0.81939 0.78395 1.20288 1.20928 1.19482 0.93070 0.93080 0.88541 0.85767 0.86323 0.91519 0.92003 0.91443 0.84458 0.93957 0.93950 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.30 -5.23 9.87 -19.77 -0.20 -5.43 16 3 C 0.12 2.24 6.69 -39.07 -0.26 1.98 16 4 C -0.19 -2.85 9.04 -39.47 -0.36 -3.20 16 5 C -0.11 -1.52 9.69 -39.54 -0.38 -1.90 16 6 C -0.10 -1.66 5.88 -104.62 -0.62 -2.28 16 7 C -0.11 -1.39 10.01 36.01 0.36 -1.03 16 8 C -0.10 -1.93 9.01 -39.39 -0.35 -2.28 16 9 C -0.10 -1.96 6.12 -38.96 -0.24 -2.20 16 10 S -0.14 -3.16 21.33 -107.50 -2.29 -5.45 16 11 C 0.06 1.65 4.09 36.00 0.15 1.80 16 12 C -0.52 -14.57 9.13 -34.44 -0.31 -14.88 16 13 H 0.07 1.92 7.71 -52.49 -0.40 1.52 16 14 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 15 N -0.89 -25.70 13.29 55.43 0.74 -24.97 16 16 Si 0.91 21.31 29.54 -169.99 -5.02 16.29 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 20 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 21 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 22 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.12 1.44 6.30 -52.49 -0.33 1.11 16 24 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 27 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 28 H 0.14 2.82 5.88 -52.48 -0.31 2.51 16 29 H 0.04 1.15 7.75 -51.92 -0.40 0.75 16 30 H 0.04 1.15 7.75 -51.92 -0.40 0.75 16 31 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 279.79 15.07 4.22 4.22 Total: -1.00 -30.54 279.79 -7.56 -38.10 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -3.89 Total: -1.86 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: -1.12 Total: -20.90 kcal Atomic # 7 Polarization: -25.70 SS G_CDS: 0.74 Total: -24.97 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: -0.20 Total: -5.43 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -3.16 SS G_CDS: -2.29 Total: -5.45 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.54 -7.56 -38.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259172145.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.208 kcal (2) G-P(sol) polarization free energy of solvation -30.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds