Wall clock time and date at job start Mon Mar 30 2020 06:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36009 * 116.99472 * 2 1 4 4 C 1.38483 * 120.08720 * 0.02562 * 3 2 1 5 5 C 1.38299 * 120.02407 * 180.25084 * 4 3 2 6 6 C 1.38277 * 120.18994 * 359.44606 * 5 4 3 7 7 C 1.50701 * 119.91752 * 180.27676 * 6 5 4 8 8 C 1.38203 * 120.16226 * 0.55482 * 6 5 4 9 9 C 1.38789 * 119.97472 * 359.72215 * 8 6 5 10 10 S 1.76202 * 120.09387 * 179.97438 * 9 8 6 11 11 C 1.81408 * 102.99893 * 0.02562 * 10 9 8 12 12 C 1.50697 * 109.46890 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00255 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99627 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00215 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99785 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46920 * 90.00056 * 16 14 12 18 18 H 1.48493 * 109.47330 * 209.99838 * 16 14 12 19 19 H 1.48502 * 109.47166 * 330.00270 * 16 14 12 20 20 H 1.09000 * 109.47267 * 299.99951 * 1 2 3 21 21 H 1.09004 * 109.47046 * 60.00054 * 1 2 3 22 22 H 1.09004 * 109.46791 * 179.97438 * 1 2 3 23 23 H 1.08002 * 119.98430 * 359.96998 * 4 3 2 24 24 H 1.07996 * 119.90250 * 179.71748 * 5 4 3 25 25 H 1.09005 * 109.46714 * 270.27326 * 7 6 5 26 26 H 1.08999 * 109.46747 * 30.27432 * 7 6 5 27 27 H 1.08998 * 109.46914 * 150.27807 * 7 6 5 28 28 H 1.08003 * 120.00721 * 179.74874 * 8 6 5 29 29 H 1.09000 * 109.46859 * 299.99844 * 11 10 9 30 30 H 1.09002 * 109.47056 * 59.99998 * 11 10 9 31 31 H 0.97001 * 119.99859 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2938 2.3744 0.0005 5 6 1.9229 3.6060 -0.0047 6 6 3.3036 3.6816 0.0011 7 6 3.9827 5.0269 0.0016 8 6 4.0623 2.5265 0.0005 9 6 3.4381 1.2869 0.0000 10 16 4.4023 -0.1879 -0.0013 11 6 6.1050 0.4379 -0.0009 12 6 7.0666 -0.7225 -0.0014 13 1 6.6910 -1.7351 -0.0023 14 6 8.4259 -0.4913 -0.0017 15 7 8.8832 0.7417 -0.0021 16 14 9.6178 -1.9296 -0.0030 17 1 9.9332 -2.3099 -1.4034 18 1 10.8675 -1.5376 0.6968 19 1 9.0003 -3.0849 0.6965 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 0.2152 2.3191 0.0005 24 1 1.3341 4.5113 -0.0089 25 1 4.1464 5.3517 -1.0260 26 1 3.3519 5.7521 0.5157 27 1 4.9409 4.9500 0.5153 28 1 5.1405 2.5884 0.0009 29 1 6.2687 1.0462 -0.8904 30 1 6.2689 1.0447 0.8896 31 1 9.8395 0.9042 -0.0019 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259172145.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:58 Heat of formation + Delta-G solvation = -45.815189 kcal Electronic energy + Delta-G solvation = -14193.337801 eV Core-core repulsion = 11758.068351 eV Total energy + Delta-G solvation = -2435.269450 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.00889 -38.57748 -35.36395 -32.99489 -32.22534 -30.72375 -28.66768 -26.77757 -25.34971 -23.86250 -22.18400 -19.39106 -18.52255 -17.65950 -17.12490 -16.64677 -16.63465 -15.54356 -15.27949 -14.82969 -14.77756 -14.60555 -14.39061 -14.26027 -13.22373 -13.10620 -13.02261 -12.76479 -12.65507 -12.52387 -12.35028 -11.76842 -11.67952 -11.55671 -10.86128 -10.85302 -10.53538 -9.29007 -8.37153 -8.14634 -6.51875 0.24126 0.40605 0.86487 1.39002 1.40736 1.53284 1.89073 2.34491 2.42793 2.67595 2.97366 3.84327 3.95782 4.15258 4.32146 4.43330 4.43719 4.46770 4.68878 4.74692 4.83667 4.84323 4.85511 4.95236 5.07258 5.24337 5.29267 5.51996 5.62164 5.80872 5.85698 6.46447 6.54917 7.16646 8.75346 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.028631 B = 0.006600 C = 0.005390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.723365 B = 4241.440280 C = 5193.413482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.118 3.882 4 C -0.182 4.182 5 C -0.087 4.087 6 C -0.110 4.110 7 C -0.106 4.106 8 C -0.120 4.120 9 C -0.132 4.132 10 S -0.160 6.160 11 C 0.079 3.921 12 C -0.544 4.544 13 H 0.064 0.936 14 C 0.017 3.983 15 N -0.922 5.922 16 Si 0.980 3.020 17 H -0.267 1.267 18 H -0.273 1.273 19 H -0.265 1.265 20 H 0.070 0.930 21 H 0.070 0.930 22 H 0.114 0.886 23 H 0.167 0.833 24 H 0.167 0.833 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.053 0.947 28 H 0.107 0.893 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.055 6.246 -0.028 17.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.067 3.933 4 C -0.202 4.202 5 C -0.107 4.107 6 C -0.112 4.112 7 C -0.163 4.163 8 C -0.145 4.145 9 C -0.245 4.245 10 S 0.085 5.915 11 C -0.068 4.068 12 C -0.582 4.582 13 H 0.082 0.918 14 C -0.184 4.184 15 N -0.560 5.560 16 Si 0.803 3.197 17 H -0.192 1.192 18 H -0.198 1.198 19 H -0.189 1.189 20 H 0.088 0.912 21 H 0.088 0.912 22 H 0.132 0.868 23 H 0.185 0.815 24 H 0.184 0.816 25 H 0.096 0.904 26 H 0.113 0.887 27 H 0.072 0.928 28 H 0.125 0.875 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.079 4.919 -0.026 16.814 hybrid contribution 1.258 0.702 -0.012 1.441 sum -14.821 5.620 -0.038 15.851 Atomic orbital electron populations 1.23379 0.76205 1.05492 1.02552 1.86160 1.23650 1.26497 1.88622 1.18561 0.89608 0.86048 0.99043 1.21470 1.01154 0.90844 1.06711 1.21222 0.93054 0.98255 0.98199 1.20093 0.94600 0.95062 1.01470 1.20774 1.00260 0.92232 1.03043 1.21067 0.99577 0.91503 1.02338 1.21408 0.94755 0.97587 1.10758 1.85253 1.03593 1.10933 1.91702 1.20964 0.88679 0.98997 0.98161 1.20957 0.91155 0.92350 1.53767 0.91781 1.25942 0.99640 0.99403 0.93429 1.70058 1.15090 1.21406 1.49484 0.85218 0.77372 0.78207 0.78903 1.19234 1.19764 1.18898 0.91171 0.91178 0.86793 0.81538 0.81580 0.90423 0.88725 0.92794 0.87484 0.96418 0.96419 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.46 16 2 O -0.34 -11.18 9.87 -93.66 -0.92 -12.11 16 3 C 0.12 4.16 6.69 22.60 0.15 4.31 16 4 C -0.18 -4.70 9.04 22.34 0.20 -4.50 16 5 C -0.09 -2.11 9.69 22.29 0.22 -1.90 16 6 C -0.11 -3.36 5.88 -19.86 -0.12 -3.48 16 7 C -0.11 -2.52 10.01 71.24 0.71 -1.81 16 8 C -0.12 -4.85 9.01 22.39 0.20 -4.65 16 9 C -0.13 -5.63 6.12 22.67 0.14 -5.49 16 10 S -0.16 -7.95 21.33 -56.49 -1.20 -9.16 16 11 C 0.08 4.50 4.09 71.23 0.29 4.79 16 12 C -0.54 -32.24 9.13 25.60 0.23 -32.01 16 13 H 0.06 3.76 7.71 -2.91 -0.02 3.74 16 14 C 0.02 0.99 5.46 84.66 0.46 1.45 16 15 N -0.92 -55.08 13.29 21.45 0.28 -54.80 16 16 Si 0.98 44.37 29.54 68.60 2.03 46.40 16 17 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 19 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 20 H 0.07 1.10 7.66 -2.39 -0.02 1.08 16 21 H 0.07 1.10 7.66 -2.38 -0.02 1.08 16 22 H 0.11 1.78 8.14 -2.38 -0.02 1.76 16 23 H 0.17 2.88 6.30 -2.91 -0.02 2.86 16 24 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 25 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 26 H 0.09 1.62 8.09 -2.39 -0.02 1.61 16 27 H 0.05 1.41 8.08 -2.39 -0.02 1.40 16 28 H 0.11 4.85 5.88 -2.91 -0.02 4.83 16 29 H 0.02 1.05 7.75 -2.39 -0.02 1.03 16 30 H 0.02 1.05 7.75 -2.39 -0.02 1.03 16 31 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -70.44 279.79 4.91 -65.53 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: 1.12 Total: 5.95 kcal Atomic # 6 Polarization: -45.43 SS G_CDS: 3.61 Total: -41.82 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.28 Total: -54.80 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: -0.92 Total: -12.11 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: -7.95 SS G_CDS: -1.20 Total: -9.16 kcal Total: -70.44 4.91 -65.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259172145.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.719 kcal (2) G-P(sol) polarization free energy of solvation -70.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds