Wall clock time and date at job start Mon Mar 30 2020 06:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36008 * 117.00257 * 2 1 4 4 C 1.38739 * 119.96899 * 0.29807 * 3 2 1 5 5 C 1.38069 * 120.02145 * 180.25518 * 4 3 2 6 6 C 1.38949 * 119.97450 * 359.46852 * 5 4 3 7 7 S 1.76200 * 120.02294 * 180.27898 * 6 5 4 8 8 C 1.81390 * 103.00249 * 0.02562 * 7 6 5 9 9 C 1.50705 * 109.47470 * 180.02562 * 8 7 6 10 10 H 1.08000 * 119.99192 * 0.02562 * 9 8 7 11 11 C 1.37873 * 120.00325 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99733 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99973 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47118 * 60.00201 * 13 11 9 15 15 H 1.48508 * 109.46904 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47075 * 299.99771 * 13 11 9 17 17 C 1.38897 * 119.94758 * 0.25380 * 6 5 4 18 18 C 1.50702 * 120.01103 * 180.02562 * 17 6 5 19 19 C 1.38112 * 119.97845 * 0.02562 * 17 6 5 20 20 H 1.08999 * 109.47117 * 59.99567 * 1 2 3 21 21 H 1.08998 * 109.46869 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47073 * 299.99780 * 1 2 3 23 23 H 1.07995 * 119.99548 * 359.97438 * 4 3 2 24 24 H 1.08002 * 120.01587 * 179.75236 * 5 4 3 25 25 H 1.09004 * 109.47202 * 300.00423 * 8 7 6 26 26 H 1.09009 * 109.47274 * 59.99830 * 8 7 6 27 27 H 0.97003 * 119.99638 * 179.97438 * 12 11 9 28 28 H 1.09000 * 109.47072 * 90.00365 * 18 17 6 29 29 H 1.09004 * 109.47082 * 210.00361 * 18 17 6 30 30 H 1.09007 * 109.46892 * 330.00137 * 18 17 6 31 31 H 1.08003 * 119.98578 * 179.97438 * 19 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2903 2.3750 0.0063 5 6 1.9160 3.6058 0.0009 6 6 3.3036 3.6791 0.0005 7 16 4.1034 5.2491 0.0011 8 6 2.7139 6.4150 0.0031 9 6 3.2423 7.8264 0.0032 10 1 4.3076 8.0041 0.0017 11 6 2.3658 8.8907 0.0041 12 7 1.0686 8.6742 0.0053 13 14 3.0209 10.6401 0.0034 14 1 3.8488 10.8582 -1.2099 15 1 1.8832 11.5946 0.0052 16 1 3.8512 10.8581 1.2152 17 6 4.0595 2.5139 0.0001 18 6 5.5645 2.5918 0.0001 19 6 3.4315 1.2838 -0.0005 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 0.2119 2.3179 0.0107 24 1 1.3273 4.5112 0.0018 25 1 2.1045 6.2556 -0.8865 26 1 2.1059 6.2542 0.8935 27 1 0.4520 9.4230 0.0063 28 1 5.9273 2.6101 1.0278 29 1 5.9734 1.7219 -0.5141 30 1 5.8814 3.4996 -0.5133 31 1 4.0192 0.3777 -0.0012 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259282725.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:00 Heat of formation + Delta-G solvation = -30.770322 kcal Electronic energy + Delta-G solvation = -14084.117557 eV Core-core repulsion = 11649.500501 eV Total energy + Delta-G solvation = -2434.617056 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.83408 -37.33667 -33.28844 -32.29292 -30.35009 -28.62642 -27.37215 -26.37290 -23.27020 -22.34930 -20.88106 -17.58675 -17.02662 -16.21876 -16.01843 -15.63163 -14.84570 -14.09921 -13.92806 -13.58764 -13.38575 -13.02635 -12.46104 -12.34812 -12.04373 -12.00644 -11.77877 -11.77173 -11.01001 -10.82190 -10.79376 -10.62288 -10.05566 -9.66628 -8.99887 -8.78662 -8.53236 -8.48991 -6.44417 -6.25628 -4.30942 1.59083 1.67046 2.55887 3.24887 3.28281 3.32113 3.40096 3.71197 3.97149 4.30520 4.98101 5.07745 5.11910 5.15104 5.19761 5.38957 5.46723 5.54633 5.72447 5.90107 6.00853 6.12268 6.30780 6.49879 6.63494 6.79568 6.94628 6.98185 7.01073 7.57071 7.67475 7.92070 8.70123 9.32871 10.85754 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.036424 B = 0.005662 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.544646 B = 4943.940073 C = 5686.734689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.323 6.323 3 C 0.104 3.896 4 C -0.192 4.192 5 C -0.091 4.091 6 C -0.104 4.104 7 S -0.154 6.154 8 C 0.066 3.934 9 C -0.517 4.517 10 H 0.068 0.932 11 C 0.068 3.932 12 N -0.891 5.891 13 Si 0.908 3.092 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.273 1.273 17 C -0.043 4.043 18 C -0.112 4.112 19 C -0.139 4.139 20 H 0.053 0.947 21 H 0.095 0.905 22 H 0.053 0.947 23 H 0.125 0.875 24 H 0.135 0.865 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.267 0.733 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.710 -13.717 0.001 13.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.237 6.237 3 C 0.057 3.943 4 C -0.213 4.213 5 C -0.115 4.115 6 C -0.217 4.217 7 S 0.092 5.908 8 C -0.081 4.081 9 C -0.557 4.557 10 H 0.086 0.914 11 C -0.137 4.137 12 N -0.529 5.529 13 Si 0.735 3.265 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.198 1.198 17 C -0.049 4.049 18 C -0.169 4.169 19 C -0.159 4.159 20 H 0.072 0.928 21 H 0.113 0.887 22 H 0.072 0.928 23 H 0.143 0.857 24 H 0.152 0.848 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.809 -13.402 -0.001 13.524 hybrid contribution -1.634 0.770 0.006 1.806 sum 0.175 -12.632 0.006 12.633 Atomic orbital electron populations 1.22981 0.78939 1.03338 1.01384 1.86029 1.20944 1.27250 1.89453 1.18869 0.92202 0.83805 0.99407 1.21085 0.99609 0.92060 1.08507 1.21211 0.93512 0.97996 0.98810 1.21883 0.96014 0.98236 1.05558 1.85218 1.19989 0.94931 1.90648 1.21377 0.91802 0.94287 1.00599 1.20587 0.93686 0.88350 1.53032 0.91408 1.24953 0.94680 0.99627 0.94417 1.69939 1.01511 1.32265 1.49166 0.86388 0.78426 0.82697 0.79023 1.19825 1.21002 1.19829 1.19321 0.95854 0.90541 0.99227 1.20768 0.90540 1.02952 1.02638 1.20084 0.91125 0.97432 1.07265 0.92814 0.88677 0.92810 0.85739 0.84764 0.94027 0.93998 0.92336 0.90868 0.91678 0.90340 0.85459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.32 -4.52 10.50 -19.77 -0.21 -4.72 16 3 C 0.10 1.65 6.69 -39.23 -0.26 1.39 16 4 C -0.19 -3.14 9.03 -39.46 -0.36 -3.49 16 5 C -0.09 -1.73 9.36 -39.38 -0.37 -2.10 16 6 C -0.10 -2.02 6.11 -39.07 -0.24 -2.26 16 7 S -0.15 -3.36 20.04 -107.50 -2.15 -5.52 16 8 C 0.07 1.69 4.09 36.01 0.15 1.84 16 9 C -0.52 -14.30 9.13 -34.44 -0.31 -14.62 16 10 H 0.07 1.85 7.71 -52.49 -0.40 1.45 16 11 C 0.07 1.86 5.46 -17.82 -0.10 1.77 16 12 N -0.89 -25.50 13.29 55.43 0.74 -24.76 16 13 Si 0.91 21.01 29.54 -169.99 -5.02 15.99 16 14 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 C -0.04 -0.72 5.90 -104.42 -0.62 -1.34 16 18 C -0.11 -1.59 9.57 36.01 0.34 -1.24 16 19 C -0.14 -2.17 9.63 -39.46 -0.38 -2.55 16 20 H 0.05 0.51 7.67 -51.93 -0.40 0.11 16 21 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 22 H 0.05 0.51 7.65 -51.93 -0.40 0.11 16 23 H 0.12 1.72 6.29 -52.49 -0.33 1.39 16 24 H 0.13 2.71 5.87 -52.49 -0.31 2.40 16 25 H 0.04 1.11 7.74 -51.92 -0.40 0.71 16 26 H 0.04 1.12 7.75 -51.92 -0.40 0.72 16 27 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.75 8.09 -51.93 -0.42 0.34 16 30 H 0.08 1.19 6.78 -51.93 -0.35 0.84 16 31 H 0.13 1.69 8.06 -52.48 -0.42 1.26 16 LS Contribution 277.64 15.07 4.18 4.18 Total: -1.00 -29.44 277.64 -7.43 -36.87 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -3.82 Total: -0.71 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: -1.15 Total: -21.32 kcal Atomic # 7 Polarization: -25.50 SS G_CDS: 0.74 Total: -24.76 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: -0.21 Total: -4.72 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: -3.36 SS G_CDS: -2.15 Total: -5.52 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.44 -7.43 -36.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259282725.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.097 kcal (2) G-P(sol) polarization free energy of solvation -29.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds