Wall clock time and date at job start Mon Mar 30 2020 06:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36008 * 117.00257 * 2 1 4 4 C 1.38739 * 119.96899 * 0.29807 * 3 2 1 5 5 C 1.38069 * 120.02145 * 180.25518 * 4 3 2 6 6 C 1.38949 * 119.97450 * 359.46852 * 5 4 3 7 7 S 1.76200 * 120.02294 * 180.27898 * 6 5 4 8 8 C 1.81390 * 103.00249 * 0.02562 * 7 6 5 9 9 C 1.50705 * 109.47470 * 180.02562 * 8 7 6 10 10 H 1.08000 * 119.99192 * 0.02562 * 9 8 7 11 11 C 1.37873 * 120.00325 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99733 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99973 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47118 * 60.00201 * 13 11 9 15 15 H 1.48508 * 109.46904 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47075 * 299.99771 * 13 11 9 17 17 C 1.38897 * 119.94758 * 0.25380 * 6 5 4 18 18 C 1.50702 * 120.01103 * 180.02562 * 17 6 5 19 19 C 1.38112 * 119.97845 * 0.02562 * 17 6 5 20 20 H 1.08999 * 109.47117 * 59.99567 * 1 2 3 21 21 H 1.08998 * 109.46869 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47073 * 299.99780 * 1 2 3 23 23 H 1.07995 * 119.99548 * 359.97438 * 4 3 2 24 24 H 1.08002 * 120.01587 * 179.75236 * 5 4 3 25 25 H 1.09004 * 109.47202 * 300.00423 * 8 7 6 26 26 H 1.09009 * 109.47274 * 59.99830 * 8 7 6 27 27 H 0.97003 * 119.99638 * 179.97438 * 12 11 9 28 28 H 1.09000 * 109.47072 * 90.00365 * 18 17 6 29 29 H 1.09004 * 109.47082 * 210.00361 * 18 17 6 30 30 H 1.09007 * 109.46892 * 330.00137 * 18 17 6 31 31 H 1.08003 * 119.98578 * 179.97438 * 19 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2903 2.3750 0.0063 5 6 1.9160 3.6058 0.0009 6 6 3.3036 3.6791 0.0005 7 16 4.1034 5.2491 0.0011 8 6 2.7139 6.4150 0.0031 9 6 3.2423 7.8264 0.0032 10 1 4.3076 8.0041 0.0017 11 6 2.3658 8.8907 0.0041 12 7 1.0686 8.6742 0.0053 13 14 3.0209 10.6401 0.0034 14 1 3.8488 10.8582 -1.2099 15 1 1.8832 11.5946 0.0052 16 1 3.8512 10.8581 1.2152 17 6 4.0595 2.5139 0.0001 18 6 5.5645 2.5918 0.0001 19 6 3.4315 1.2838 -0.0005 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 0.2119 2.3179 0.0107 24 1 1.3273 4.5112 0.0018 25 1 2.1045 6.2556 -0.8865 26 1 2.1059 6.2542 0.8935 27 1 0.4520 9.4230 0.0063 28 1 5.9273 2.6101 1.0278 29 1 5.9734 1.7219 -0.5141 30 1 5.8814 3.4996 -0.5133 31 1 4.0192 0.3777 -0.0012 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259282725.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:00 Heat of formation + Delta-G solvation = -47.212193 kcal Electronic energy + Delta-G solvation = -14084.830530 eV Core-core repulsion = 11649.500501 eV Total energy + Delta-G solvation = -2435.330029 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.05118 -38.54449 -35.37469 -33.61838 -31.63295 -30.65239 -28.48893 -27.45108 -25.31579 -23.70404 -22.17318 -19.01297 -18.57244 -17.99048 -17.29465 -16.68237 -16.64835 -15.59112 -15.35315 -14.93632 -14.76541 -14.37103 -14.32058 -14.13480 -13.62576 -13.13368 -12.95564 -12.77977 -12.75089 -12.58367 -12.09438 -12.07347 -11.75954 -11.63176 -10.83834 -10.78240 -9.99478 -9.82801 -8.36301 -8.07843 -6.50829 0.27282 0.29165 0.90704 1.40116 1.43263 1.52017 1.87860 2.34965 2.36264 2.63213 2.98808 3.76371 3.84007 4.14116 4.29544 4.39098 4.40821 4.49335 4.70777 4.73302 4.82600 4.85492 4.86257 4.92863 5.03771 5.25783 5.29281 5.48899 5.53502 5.66823 5.82600 6.40592 6.56446 7.18018 8.75930 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.036424 B = 0.005662 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.544646 B = 4943.940073 C = 5686.734689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.326 6.326 3 C 0.115 3.885 4 C -0.195 4.195 5 C -0.109 4.109 6 C -0.134 4.134 7 S -0.149 6.149 8 C 0.072 3.928 9 C -0.541 4.541 10 H 0.067 0.933 11 C 0.016 3.984 12 N -0.925 5.925 13 Si 0.979 3.021 14 H -0.265 1.265 15 H -0.277 1.277 16 H -0.265 1.265 17 C -0.040 4.040 18 C -0.112 4.112 19 C -0.138 4.138 20 H 0.059 0.941 21 H 0.126 0.874 22 H 0.059 0.941 23 H 0.146 0.854 24 H 0.108 0.892 25 H 0.016 0.984 26 H 0.017 0.983 27 H 0.271 0.729 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.411 -15.308 0.015 15.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.240 6.240 3 C 0.067 3.933 4 C -0.215 4.215 5 C -0.133 4.133 6 C -0.247 4.247 7 S 0.096 5.904 8 C -0.075 4.075 9 C -0.580 4.580 10 H 0.085 0.915 11 C -0.185 4.185 12 N -0.563 5.563 13 Si 0.801 3.199 14 H -0.189 1.189 15 H -0.202 1.202 16 H -0.189 1.189 17 C -0.046 4.046 18 C -0.168 4.168 19 C -0.158 4.158 20 H 0.078 0.922 21 H 0.144 0.856 22 H 0.078 0.922 23 H 0.164 0.836 24 H 0.126 0.874 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.080 0.920 28 H 0.103 0.897 29 H 0.116 0.884 30 H 0.082 0.918 31 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.497 -15.029 0.013 15.235 hybrid contribution -1.941 1.018 0.002 2.192 sum 0.556 -14.011 0.015 14.022 Atomic orbital electron populations 1.23338 0.76722 1.05693 1.01953 1.86045 1.23188 1.25897 1.88836 1.19024 0.92591 0.84234 0.97414 1.21244 1.00889 0.91255 1.08137 1.21112 0.93513 0.98309 1.00335 1.21912 0.96418 0.97569 1.08835 1.84861 1.17904 0.95836 1.91815 1.21011 0.92952 0.95413 0.98137 1.20945 0.93870 0.89669 1.53529 0.91461 1.25935 0.94830 1.04196 0.93521 1.70059 1.02820 1.33741 1.49668 0.85295 0.78067 0.77047 0.79463 1.18929 1.20150 1.18934 1.19655 0.97242 0.89934 0.97741 1.20841 0.88650 1.03701 1.03634 1.20431 0.91445 0.97891 1.06049 0.92246 0.85550 0.92234 0.83602 0.87351 0.96535 0.96501 0.91996 0.89695 0.88433 0.91809 0.82315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.33 -8.07 10.50 -93.65 -0.98 -9.06 16 3 C 0.12 3.37 6.69 22.50 0.15 3.52 16 4 C -0.20 -6.23 9.03 22.35 0.20 -6.03 16 5 C -0.11 -4.27 9.36 22.40 0.21 -4.06 16 6 C -0.13 -5.34 6.11 22.60 0.14 -5.20 16 7 S -0.15 -6.72 20.04 -56.49 -1.13 -7.85 16 8 C 0.07 3.92 4.09 71.24 0.29 4.21 16 9 C -0.54 -30.97 9.13 25.60 0.23 -30.74 16 10 H 0.07 3.76 7.71 -2.91 -0.02 3.74 16 11 C 0.02 0.92 5.46 84.65 0.46 1.38 16 12 N -0.92 -54.51 13.29 21.45 0.28 -54.22 16 13 Si 0.98 43.36 29.54 68.60 2.03 45.39 16 14 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 15 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 16 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 17 C -0.04 -1.28 5.90 -19.74 -0.12 -1.40 16 18 C -0.11 -2.91 9.57 71.24 0.68 -2.23 16 19 C -0.14 -3.93 9.63 22.35 0.22 -3.71 16 20 H 0.06 0.96 7.67 -2.39 -0.02 0.94 16 21 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.06 0.96 7.65 -2.39 -0.02 0.94 16 23 H 0.15 3.88 6.29 -2.91 -0.02 3.86 16 24 H 0.11 4.75 5.87 -2.91 -0.02 4.74 16 25 H 0.02 0.95 7.74 -2.39 -0.02 0.93 16 26 H 0.02 0.97 7.75 -2.39 -0.02 0.95 16 27 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 28 H 0.08 2.03 8.14 -2.39 -0.02 2.02 16 29 H 0.10 1.91 8.09 -2.38 -0.02 1.89 16 30 H 0.06 1.87 6.78 -2.38 -0.02 1.85 16 31 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -64.96 277.64 4.90 -60.06 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: 1.12 Total: 8.53 kcal Atomic # 6 Polarization: -46.43 SS G_CDS: 3.58 Total: -42.85 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: 0.28 Total: -54.22 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: -0.98 Total: -9.06 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: -6.72 SS G_CDS: -1.13 Total: -7.85 kcal Total: -64.96 4.90 -60.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259282725.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.848 kcal (2) G-P(sol) polarization free energy of solvation -64.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds