Wall clock time and date at job start Mon Mar 30 2020 05:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99753 * 2 1 4 4 H 1.48504 * 109.46757 * 269.99183 * 3 2 1 5 5 H 1.48491 * 109.47294 * 29.99802 * 3 2 1 6 6 H 1.48504 * 109.47150 * 149.99726 * 3 2 1 7 7 C 1.37878 * 120.00083 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00176 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00093 * 0.02562 * 7 2 1 10 10 S 1.81395 * 109.47138 * 179.97438 * 9 7 2 11 11 C 1.76198 * 103.00081 * 179.97438 * 10 9 7 12 12 C 1.38923 * 120.01316 * 0.02562 * 11 10 9 13 13 C 1.38168 * 120.05985 * 179.76671 * 12 11 10 14 14 C 1.38548 * 120.13471 * 0.42139 * 13 12 11 15 15 C 1.39280 * 119.95657 * 359.57686 * 14 13 12 16 16 C 1.38499 * 119.90478 * 0.21114 * 15 14 13 17 17 O 1.36511 * 108.64879 * 180.25067 * 15 14 13 18 18 C 1.43982 * 105.50120 * 342.69022 * 17 15 14 19 19 O 1.36635 * 131.44010 * 179.87983 * 14 13 12 20 20 H 0.96996 * 119.99831 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.47546 * 59.99168 * 9 7 2 22 22 H 1.09002 * 109.47022 * 299.99142 * 9 7 2 23 23 H 1.08003 * 119.97011 * 0.02562 * 12 11 10 24 24 H 1.08011 * 119.93712 * 180.31365 * 13 12 11 25 25 H 1.07994 * 120.01408 * 180.02562 * 16 15 14 26 26 H 1.08997 * 110.57106 * 268.59838 * 18 17 15 27 27 H 1.09002 * 110.56862 * 145.72070 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6526 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 16 2.4299 -3.8779 0.0005 11 6 1.3826 -5.2948 0.0013 12 6 0.0022 -5.1386 0.0012 13 6 -0.8200 -6.2491 -0.0031 14 6 -0.2709 -7.5211 0.0016 15 6 1.1127 -7.6814 0.0016 16 6 1.9368 -6.5682 0.0015 17 8 1.3975 -9.0165 0.0009 18 6 0.1822 -9.6693 0.4133 19 8 -0.8528 -8.7573 0.0011 20 1 -0.4850 0.8400 -0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6242 -2.5568 0.8904 23 1 -0.4287 -4.1483 0.0002 24 1 -1.8929 -6.1253 -0.0083 25 1 3.0098 -6.6905 0.0011 26 1 0.1670 -9.8024 1.4950 27 1 0.0717 -10.6282 -0.0933 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259336393.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:32 Heat of formation + Delta-G solvation = -43.869055 kcal Electronic energy + Delta-G solvation = -13857.026144 eV Core-core repulsion = 11286.007990 eV Total energy + Delta-G solvation = -2571.018154 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.045 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.97453 -37.51107 -36.15882 -33.29951 -30.48599 -29.97497 -28.57937 -25.81233 -23.53486 -22.75993 -22.35906 -18.24961 -17.76792 -17.18710 -16.82839 -16.09968 -15.28776 -14.55932 -14.32149 -13.89331 -13.71151 -13.53359 -13.07009 -12.87597 -12.45842 -12.39563 -12.02226 -11.16777 -11.09327 -10.87289 -10.79193 -10.19610 -9.72490 -9.15842 -8.99979 -8.69796 -8.23408 -6.63090 -6.30285 -4.36116 1.28921 1.42393 2.24905 2.95325 3.20938 3.27142 3.31444 3.53275 3.57808 3.75772 4.27090 4.65708 4.67080 4.86292 5.07563 5.27462 5.30117 5.45924 5.68989 6.03943 6.24825 6.32281 6.50404 6.57919 6.90032 6.92907 7.25960 7.62770 7.85100 8.65072 9.28287 10.80914 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.068006 B = 0.005017 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.628362 B = 5580.047076 C = 5964.019590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.069 3.931 3 Si 0.909 3.091 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.520 4.520 8 H 0.069 0.931 9 C 0.067 3.933 10 S -0.140 6.140 11 C -0.059 4.059 12 C -0.125 4.125 13 C -0.076 4.076 14 C 0.002 3.998 15 C 0.045 3.955 16 C -0.094 4.094 17 O -0.312 6.312 18 C 0.214 3.786 19 O -0.313 6.313 20 H 0.268 0.732 21 H 0.046 0.954 22 H 0.046 0.954 23 H 0.148 0.852 24 H 0.134 0.866 25 H 0.136 0.864 26 H 0.079 0.921 27 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.774 -14.013 1.059 14.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.559 4.559 8 H 0.087 0.913 9 C -0.080 4.080 10 S 0.108 5.892 11 C -0.173 4.173 12 C -0.150 4.150 13 C -0.097 4.097 14 C -0.045 4.045 15 C -0.001 4.001 16 C -0.119 4.119 17 O -0.228 6.228 18 C 0.102 3.898 19 O -0.230 6.230 20 H 0.077 0.923 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.165 0.835 24 H 0.152 0.848 25 H 0.154 0.846 26 H 0.097 0.903 27 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.313 -13.876 0.959 13.913 hybrid contribution -1.103 0.475 0.061 1.203 sum -0.790 -13.401 1.020 13.463 Atomic orbital electron populations 1.69937 1.06151 1.27636 1.48907 1.24948 0.95007 0.99341 0.94314 0.86313 0.79734 0.81970 0.78451 1.20241 1.20878 1.19469 1.20600 0.93510 0.88469 1.53356 0.91274 1.21448 0.94543 0.90940 1.01060 1.85468 1.17123 0.96994 1.89568 1.21810 0.96916 0.97375 1.01168 1.21229 0.91939 0.99248 1.02592 1.19958 1.00515 0.87435 1.01763 1.19668 0.90138 0.86832 1.07840 1.19561 0.92679 0.84010 1.03859 1.19548 0.99400 0.87321 1.05668 1.87324 1.35259 1.15251 1.85003 1.25518 0.71636 0.92899 0.99770 1.87338 1.35651 1.14642 1.85351 0.92277 0.93556 0.93553 0.83482 0.84812 0.84627 0.90312 0.85619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.77 13.29 55.43 0.74 -24.03 15 2 C 0.07 1.85 5.46 -17.82 -0.10 1.75 15 3 Si 0.91 20.60 29.54 -169.99 -5.02 15.58 15 4 H -0.28 -6.20 7.11 56.52 0.40 -5.79 15 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 15 7 C -0.52 -13.95 9.13 -34.44 -0.31 -14.27 15 8 H 0.07 1.84 7.71 -52.49 -0.40 1.44 15 9 C 0.07 1.64 4.09 36.01 0.15 1.78 15 10 S -0.14 -2.93 21.84 -107.50 -2.35 -5.28 15 11 C -0.06 -1.09 6.11 -39.09 -0.24 -1.33 15 12 C -0.13 -2.22 9.36 -39.35 -0.37 -2.59 15 13 C -0.08 -1.21 10.05 -39.49 -0.40 -1.60 15 14 C 0.00 0.04 7.15 -39.08 -0.28 -0.24 15 15 C 0.04 0.73 7.14 -39.10 -0.28 0.45 15 16 C -0.09 -1.60 9.80 -39.25 -0.38 -1.98 15 17 O -0.31 -4.51 11.40 -45.73 -0.52 -5.04 15 18 C 0.21 2.33 8.89 101.05 0.90 3.23 15 19 O -0.31 -4.47 11.41 -46.13 -0.53 -5.00 15 20 H 0.27 7.02 8.31 -40.82 -0.34 6.68 15 21 H 0.05 1.17 7.74 -51.92 -0.40 0.77 15 22 H 0.05 1.17 7.74 -51.92 -0.40 0.77 15 23 H 0.15 2.71 5.86 -52.48 -0.31 2.40 15 24 H 0.13 1.79 8.06 -52.48 -0.42 1.37 15 25 H 0.14 2.11 8.06 -52.49 -0.42 1.68 15 26 H 0.08 0.69 8.14 -51.93 -0.42 0.27 15 27 H 0.13 0.92 8.14 -51.93 -0.42 0.49 15 LS Contribution 255.74 15.07 3.85 3.85 Total: -1.00 -28.72 255.74 -7.48 -36.21 By element: Atomic # 1 Polarization: 0.85 SS G_CDS: -2.34 Total: -1.49 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -1.31 Total: -14.81 kcal Atomic # 7 Polarization: -24.77 SS G_CDS: 0.74 Total: -24.03 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -1.05 Total: -10.04 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: -2.93 SS G_CDS: -2.35 Total: -5.28 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -28.72 -7.48 -36.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259336393.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.662 kcal (2) G-P(sol) polarization free energy of solvation -28.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds