Wall clock time and date at job start Mon Mar 30 2020 05:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00190 * 2 1 4 4 H 1.48497 * 109.47345 * 270.00720 * 3 2 1 5 5 H 1.48502 * 109.47047 * 30.00856 * 3 2 1 6 6 H 1.48502 * 109.46987 * 149.99960 * 3 2 1 7 7 C 1.37876 * 119.99705 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00526 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99700 * 179.97438 * 7 2 1 10 10 C 1.50705 * 109.46831 * 180.02562 * 9 7 2 11 11 C 1.38370 * 120.12644 * 99.98306 * 10 9 7 12 12 C 1.37630 * 120.02441 * 180.02562 * 11 10 9 13 13 C 1.39036 * 120.79537 * 359.63571 * 12 11 10 14 14 C 1.39225 * 118.87388 * 0.54926 * 13 12 11 15 15 C 1.38095 * 120.22684 * 359.61386 * 14 13 12 16 16 Cl 1.73602 * 119.83466 * 180.02562 * 15 14 13 17 17 O 1.36126 * 111.25608 * 180.58294 * 13 12 11 18 18 C 1.43763 * 109.29037 * 341.40480 * 17 13 12 19 19 C 1.51649 * 132.23150 * 179.62125 * 12 11 10 20 20 H 0.97002 * 119.99401 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.46630 * 60.00435 * 9 7 2 22 22 H 1.08997 * 109.47420 * 300.00101 * 9 7 2 23 23 H 1.08007 * 119.99648 * 0.02562 * 11 10 9 24 24 H 1.07994 * 119.88918 * 179.59589 * 14 13 12 25 25 H 1.08993 * 110.74744 * 269.24074 * 18 17 13 26 26 H 1.08995 * 110.90665 * 145.96355 * 18 17 13 27 27 H 1.09002 * 110.94508 * 77.55895 * 19 12 11 28 28 H 1.08997 * 110.93949 * 313.90219 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.0138 -2.6150 -0.0023 11 6 4.4404 -3.1998 -1.1815 12 6 4.8982 -4.4977 -1.1802 13 6 4.9464 -5.2344 -0.0020 14 6 4.5118 -4.6410 1.1801 15 6 4.0498 -3.3397 1.1758 16 17 3.5111 -2.6096 2.6558 17 8 5.4405 -6.4838 -0.2210 18 6 5.3461 -6.7930 -1.6218 19 6 5.4144 -5.3976 -2.2864 20 1 -0.4849 0.8401 0.0004 21 1 3.8751 -0.6805 0.8889 22 1 3.8746 -0.6801 -0.8911 23 1 4.4142 -2.6377 -2.1034 24 1 4.5359 -5.2004 2.1035 25 1 4.3980 -7.2816 -1.8463 26 1 6.1835 -7.4137 -1.9404 27 1 6.4405 -5.1414 -2.5502 28 1 4.7660 -5.3505 -3.1612 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259349583.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:33 Heat of formation + Delta-G solvation = -20.214237 kcal Electronic energy + Delta-G solvation = -14321.888321 eV Core-core repulsion = 11749.852210 eV Total energy + Delta-G solvation = -2572.036110 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.82317 -37.65124 -35.58987 -33.18902 -32.37351 -31.13899 -28.83838 -27.35258 -23.49032 -22.68906 -21.70016 -20.14139 -17.26668 -16.79921 -16.50382 -16.03075 -14.95725 -14.14810 -13.96029 -13.57726 -13.10893 -12.97140 -12.85981 -12.50213 -11.77462 -11.67222 -11.62331 -11.41564 -10.82893 -10.54187 -10.41703 -10.28847 -9.93643 -9.81459 -9.32165 -8.55239 -8.36932 -7.51446 -6.04432 -4.02651 1.52120 1.75307 2.66053 3.29530 3.38021 3.41106 3.57814 4.00118 4.43802 4.55390 4.70032 4.99906 5.12500 5.27813 5.38053 5.49094 5.66073 5.72227 5.85292 5.91367 6.19592 6.48571 6.64300 6.68918 6.81080 7.03276 7.34435 7.41371 7.69460 8.50559 9.00215 9.55754 11.08668 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.032099 B = 0.007646 C = 0.006751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.084497 B = 3661.086321 C = 4146.821078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.872 3.128 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.503 4.503 8 H 0.074 0.926 9 C 0.017 3.983 10 C -0.045 4.045 11 C -0.065 4.065 12 C -0.172 4.172 13 C 0.086 3.914 14 C -0.131 4.131 15 C -0.001 4.001 16 Cl -0.052 7.052 17 O -0.308 6.308 18 C 0.053 3.947 19 C -0.107 4.107 20 H 0.263 0.737 21 H 0.038 0.962 22 H 0.025 0.975 23 H 0.130 0.870 24 H 0.130 0.870 25 H 0.074 0.926 26 H 0.102 0.898 27 H 0.087 0.913 28 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.233 -9.564 -2.290 14.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.129 4.129 3 Si 0.699 3.301 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.541 4.541 8 H 0.092 0.908 9 C -0.020 4.020 10 C -0.046 4.046 11 C -0.084 4.084 12 C -0.173 4.173 13 C 0.041 3.959 14 C -0.151 4.151 15 C -0.028 4.028 16 Cl -0.023 7.023 17 O -0.223 6.223 18 C -0.022 4.022 19 C -0.144 4.144 20 H 0.073 0.927 21 H 0.056 0.944 22 H 0.043 0.957 23 H 0.148 0.852 24 H 0.148 0.852 25 H 0.092 0.908 26 H 0.120 0.880 27 H 0.105 0.895 28 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 11.111 -9.545 -1.999 14.784 hybrid contribution 0.183 0.944 -0.079 0.965 sum 11.294 -8.601 -2.079 14.348 Atomic orbital electron populations 1.69894 1.06202 1.26841 1.50890 1.24921 0.94655 0.98768 0.94579 0.86891 0.80632 0.84012 0.78563 1.20239 1.21264 1.18795 1.20800 0.87756 0.94641 1.50936 0.90812 1.18823 0.97898 0.87423 0.97885 1.20100 0.95407 0.98853 0.90200 1.20144 0.97501 0.92649 0.98071 1.20737 1.05728 0.95978 0.94868 1.19110 0.97367 0.85033 0.94398 1.19860 1.04156 0.94200 0.96868 1.20285 1.01206 0.92651 0.88677 1.98355 1.88424 1.82739 1.32805 1.86759 1.78141 1.30295 1.27067 1.23762 1.02779 0.96961 0.78734 1.21743 1.02290 0.92748 0.97664 0.92673 0.94411 0.95724 0.85196 0.85174 0.90775 0.88012 0.89450 0.89149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.96 55.43 0.77 -26.59 15 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 15 3 Si 0.87 21.23 27.47 -169.99 -4.67 16.56 15 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 15 6 H -0.26 -6.16 6.54 56.52 0.37 -5.79 15 7 C -0.50 -13.98 9.41 -34.44 -0.32 -14.30 15 8 H 0.07 2.26 7.98 -52.49 -0.42 1.84 15 9 C 0.02 0.39 3.64 -29.03 -0.11 0.29 15 10 C -0.04 -0.93 5.08 -104.53 -0.53 -1.46 15 11 C -0.07 -1.19 9.66 -39.75 -0.38 -1.57 15 12 C -0.17 -2.78 6.27 -104.08 -0.65 -3.44 15 13 C 0.09 1.45 7.04 -38.92 -0.27 1.17 15 14 C -0.13 -2.33 9.84 -39.27 -0.39 -2.71 15 15 C 0.00 -0.03 6.29 -39.59 -0.25 -0.28 15 16 Cl -0.05 -1.04 27.31 -51.86 -1.42 -2.46 15 17 O -0.31 -4.65 11.10 -20.14 -0.22 -4.87 15 18 C 0.05 0.57 8.01 38.06 0.30 0.88 15 19 C -0.11 -1.25 7.11 -26.51 -0.19 -1.43 15 20 H 0.26 7.52 8.31 -40.82 -0.34 7.18 15 21 H 0.04 0.90 6.42 -51.93 -0.33 0.57 15 22 H 0.02 0.56 7.44 -51.93 -0.39 0.17 15 23 H 0.13 2.15 8.04 -52.48 -0.42 1.73 15 24 H 0.13 2.05 8.06 -52.49 -0.42 1.63 15 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 15 26 H 0.10 0.79 8.14 -51.93 -0.42 0.37 15 27 H 0.09 0.88 8.14 -51.93 -0.42 0.46 15 28 H 0.09 0.91 8.14 -51.93 -0.42 0.49 15 LS Contribution 257.24 15.07 3.88 3.88 Total: -1.00 -30.78 257.24 -7.39 -38.17 By element: Atomic # 1 Polarization: -0.96 SS G_CDS: -2.84 Total: -3.80 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -2.89 Total: -20.89 kcal Atomic # 7 Polarization: -27.36 SS G_CDS: 0.77 Total: -26.59 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.22 Total: -4.87 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.42 Total: -2.46 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.78 -7.39 -38.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259349583.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.952 kcal (2) G-P(sol) polarization free energy of solvation -30.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds